Factsheet for Bra015501.1-P

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 6
cytosol 1
nucleus 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra025431.1-P
Bra028174.1-P
Bra028181.1-P
Bra028406.1-P
Bra032056.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G06460.1	Bra032056.1-P	AT2G24860.1	21798944
AT1G06460.1	Bra025431.1-P	AT5G38420.1	21798944
AT1G06460.1	Bra028174.1-P	AT5G38420.1	21798944
AT1G06460.1	Bra028181.1-P	AT5G38420.1	21798944
AT1G06460.1	Bra028406.1-P	AT5G38420.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY06642	Canola	plastid	97.69	86.99
Bra030653.1-P	Field mustard	plastid	76.15	59.64
AT1G06460.1	Thale cress	nucleus, plastid	64.62	58.95
KRH14447	Soybean	cytosol	37.69	37.55
KRH73706	Soybean	cytosol	37.31	37.16
VIT_12s0028g01390.t01	Wine grape	cytosol, plastid	36.92	37.07
Solyc07g055720.2.1	Tomato	nucleus	33.08	36.13
PGSC0003DMT400044530	Potato	cytosol, nucleus, plastid	32.69	34.0
GSMUA_Achr3P03670_001	Banana	plasma membrane	30.38	30.74

Protein Annotations

EnsemblPlants:Bra015501.1	EnsemblPlants:Bra015501.1-P	EnsemblPlantsGene:Bra015501	Gene3D:2.60.40.790	InterPro:A-crystallin/Hsp20_dom	InterPro:HSP20-like_chaperone
InterPro:IPR002068	InterPro:IPR008978	PANTHER:PTHR43670	PANTHER:PTHR43670:SF5	PFAM:PF00011	PFscan:PS01031
SUPFAM:SSF49764	UniParc:UPI0002545135	UniProt:M4DG78	MapMan:35.2	:	:

Description

AT1G06460 (E=8e-098) ACD32.1, ACD31.2 | ACD32.1 (ALPHA-CRYSTALLIN DOMAIN 32.1)

Coordinates

chrA10:+:1373596..1374929

Molecular Weight (calculated)

28716.7 Da

IEP (calculated)

8.265

GRAVY (calculated)

-0.532

Length

260 amino acids

Sequence
(BLAST)

001: MPQNCSGSLN SVIRRCDNKL SFARQASSEQ GFFMKQASPD ETGTGGGITL KNSVVRRCDN RLYFARQASS AQGLFMRQAS TDEDAASTKY SATKTNCFPS
101: SQQPLLSRPE YAPPQFSKAA AKDEFFVCSD SPYHQKEDGL EKPYNPDLPK LANLGTVWSP RSNVAEYENN YLVAVELPGA SINDIRVEVD NTNLTVTGRR
201: TSVCQKVDAC TKGSIFGYHH KQEILQGPFK VSWPLPSNVN KDNVSAEFMD GILRIVIPKI

Best Arabidopsis Sequence Match ( AT1G06460.1 )
(BLAST)

001: MEHESITARR RLAAFAAHFP ATSYDSASTA SLVPLNCSSS LNTVIQRCDN KISFARQASS EQGFFMRPAS PDDVLENLGM NLKNTVVRRG DNRLYFARQA
101: SSAQGFFMRQ ASTNERTIPH DAAASTKFSA TKTTGFDSSS PAYAAPHFSK PAKEDIFFPS LSPNLQKERP KLDLPKLANL GTVWSPRSNV AESTHSYVVA
201: IELPGASIND IRVEVDNTNL TVTGRRTSIC QKVDAGTKAS ILGYHKQEIL QGPFKVSWPL PSNVNKDNVS AEFMDGILRI VIPKL

Arabidopsis Description

ACD32.1Alpha-crystallin domain 32.1 [Source:UniProtKB/TrEMBL;Acc:Q208N7]
SUBAcon: [plastid,nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.