Factsheet for Bra030653.1-P

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

nucleus 1
plastid 3
mitochondrion 2
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra025431.1-P
Bra028174.1-P
Bra028181.1-P
Bra028406.1-P
Bra032056.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G06460.1	Bra032056.1-P	AT2G24860.1	21798944
AT1G06460.1	Bra025431.1-P	AT5G38420.1	21798944
AT1G06460.1	Bra028174.1-P	AT5G38420.1	21798944
AT1G06460.1	Bra028181.1-P	AT5G38420.1	21798944
AT1G06460.1	Bra028406.1-P	AT5G38420.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY15579	Canola	plastid	39.76	86.84
Bra015501.1-P	Field mustard	plastid	59.64	76.15
CDX86521	Canola	plastid	62.95	72.32
AT1G06460.1	Thale cress	nucleus, plastid	54.22	63.16
VIT_12s0028g01390.t01	Wine grape	cytosol, plastid	31.02	39.77
KRH14447	Soybean	cytosol	30.72	39.08
KRH73706	Soybean	cytosol	30.42	38.7
Solyc07g055720.2.1	Tomato	nucleus	27.41	38.24
PGSC0003DMT400044530	Potato	cytosol, nucleus, plastid	27.41	36.4
GSMUA_Achr3P03670_001	Banana	plasma membrane	23.19	29.96

Protein Annotations

EnsemblPlants:Bra030653.1	EnsemblPlants:Bra030653.1-P	EnsemblPlantsGene:Bra030653	Gene3D:2.60.40.790	InterPro:A-crystallin/Hsp20_dom	InterPro:HSP20-like_chaperone
InterPro:IPR002068	InterPro:IPR008978	InterPro:PORR_domain	PANTHER:PTHR31476	PANTHER:PTHR31476:SF32	PFAM:PF00011
PFAM:PF11955	PFscan:PS01031	SUPFAM:SSF49764	UniParc:UPI0002546F5A	UniProt:M4EPD3	MapMan:35.2

Description

AT1G06460 (E=9e-100) ACD32.1, ACD31.2 | ACD32.1 (ALPHA-CRYSTALLIN DOMAIN 32.1)

Coordinates

chrA08:+:20940395..20942492

Molecular Weight (calculated)

36772.7 Da

IEP (calculated)

8.565

GRAVY (calculated)

-0.332

Length

332 amino acids

Sequence
(BLAST)

001: MELDSITAKR RLATVAAHFP NDPVSTASLV PLNCSSSLNS VISRCDSKLP FARQASSEQG FFMRQASTDE FTPHTGGTTL KNSVIRRCDS RLYFARQASS
101: AQGLFMRQAS TDERTIPQDA ASTKSFAIPS STELPLLSRP EYAPPQFSKA AAKDEFFVLS DLPKENLDKP YNPDLPKLAN PGTVWSPRSN VAEYEHNYVV
201: AIELPGASIN DIRVEVDNLN LTVTGRRTAV CQKVDAGTNG SICGYQKQGI LQGPFKVSWP LPINVNKDNV SAEFMDLFLD HPGMFYISTK GKIHTVFLRE
301: AYERGRLIDP SPVYEARRKL LDRVLLCRHA AL

Best Arabidopsis Sequence Match ( AT1G06460.1 )
(BLAST)

001: MEHESITARR RLAAFAAHFP ATSYDSASTA SLVPLNCSSS LNTVIQRCDN KISFARQASS EQGFFMRPAS PDDVLENLGM NLKNTVVRRG DNRLYFARQA
101: SSAQGFFMRQ ASTNERTIPH DAAASTKFSA TKTTGFDSSS PAYAAPHFSK PAKEDIFFPS LSPNLQKERP KLDLPKLANL GTVWSPRSNV AESTHSYVVA
201: IELPGASIND IRVEVDNTNL TVTGRRTSIC QKVDAGTKAS ILGYHKQEIL QGPFKVSWPL PSNVNKDNVS AEFMDGILRI VIPKL

Arabidopsis Description

ACD32.1Alpha-crystallin domain 32.1 [Source:UniProtKB/TrEMBL;Acc:Q208N7]
SUBAcon: [plastid,nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.