Subcellular Localization
min:
: max
Winner_takes_all: plastid, nucleus, cytosol
Predictor Summary:
Predictor Summary:
- plastid 3
- cytosol 1
- nucleus 2
- peroxisome 2
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Solyc07g055720.2.1 | Tomato | nucleus | 88.8 | 93.28 |
| VIT_12s0028g01390.t01 | Wine grape | cytosol, plastid | 53.2 | 51.35 |
| CDY15579 | Canola | plastid | 28.8 | 47.37 |
| KRH73706 | Soybean | cytosol | 42.4 | 40.61 |
| KRH14447 | Soybean | cytosol | 42.0 | 40.23 |
| AT1G06460.1 | Thale cress | nucleus, plastid | 40.8 | 35.79 |
| GSMUA_Achr3P03670_001 | Banana | plasma membrane | 34.4 | 33.46 |
| Bra015501.1-P | Field mustard | plastid | 34.0 | 32.69 |
| CDY06642 | Canola | plastid | 37.2 | 31.85 |
| CDX86521 | Canola | plastid | 35.2 | 30.45 |
| CDY10200 | Canola | mitochondrion, plastid | 35.2 | 30.34 |
| Bra030653.1-P | Field mustard | plastid | 36.4 | 27.41 |
Protein Annotations
| EnsemblPlants:PGSC0003DMT400044530 | EnsemblPlantsGene:PGSC0003DMG401017288 | EntrezGene:102586713 | Gene3D:2.60.40.790 | InterPro:A-crystallin/Hsp20_dom | InterPro:HSP20-like_chaperone |
| InterPro:IPR002068 | InterPro:IPR008978 | PANTHER:PTHR43670 | PANTHER:PTHR43670:SF5 | PFAM:PF00011 | PFscan:PS01031 |
| PGSC:PGSC0003DMG401017288 | RefSeq:XP_006348985.1 | SUPFAM:SSF49764 | UniParc:UPI0002965269 | UniProt:M1BGB4 | MapMan:35.2 |
Description
Small heat-shock protein [Source:PGSC_GENE;Acc:PGSC0003DMG401017288]
Coordinates
chr7:+:50794176..50799268
Molecular Weight (calculated)
27877.9 Da
IEP (calculated)
9.390
GRAVY (calculated)
-0.610
Length
250 amino acids
Sequence
(BLAST)
(BLAST)
001: MESQIVRRRV NMITAHLTAH DDISASATHL FPMSCSSSLN SAIPRYDNRM NYARQSSSSQ ACFMRPKSSE QGSCTESATP FKANDYAKKS SRAFEGPMFS
101: RPANNTTQDC KHNGTAEEAP KFARLRTRTN EPRFQLKERR NELESNGSEW SPKMDVAESG SMYVVSIELP GVNINDIKVE VSDKSLIVSG NRSTQCKVAS
201: YLNGLVSAYH KKEIVQGPYR VFWPLPSNAN KDRVSAEFVD GLLQIAIPKL
101: RPANNTTQDC KHNGTAEEAP KFARLRTRTN EPRFQLKERR NELESNGSEW SPKMDVAESG SMYVVSIELP GVNINDIKVE VSDKSLIVSG NRSTQCKVAS
201: YLNGLVSAYH KKEIVQGPYR VFWPLPSNAN KDRVSAEFVD GLLQIAIPKL
001: MEHESITARR RLAAFAAHFP ATSYDSASTA SLVPLNCSSS LNTVIQRCDN KISFARQASS EQGFFMRPAS PDDVLENLGM NLKNTVVRRG DNRLYFARQA
101: SSAQGFFMRQ ASTNERTIPH DAAASTKFSA TKTTGFDSSS PAYAAPHFSK PAKEDIFFPS LSPNLQKERP KLDLPKLANL GTVWSPRSNV AESTHSYVVA
201: IELPGASIND IRVEVDNTNL TVTGRRTSIC QKVDAGTKAS ILGYHKQEIL QGPFKVSWPL PSNVNKDNVS AEFMDGILRI VIPKL
101: SSAQGFFMRQ ASTNERTIPH DAAASTKFSA TKTTGFDSSS PAYAAPHFSK PAKEDIFFPS LSPNLQKERP KLDLPKLANL GTVWSPRSNV AESTHSYVVA
201: IELPGASIND IRVEVDNTNL TVTGRRTSIC QKVDAGTKAS ILGYHKQEIL QGPFKVSWPL PSNVNKDNVS AEFMDGILRI VIPKL
Arabidopsis Description
ACD32.1Alpha-crystallin domain 32.1 [Source:UniProtKB/TrEMBL;Acc:Q208N7]
SUBAcon: [plastid,nucleus]
SUBAcon: [plastid,nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.