Subcellular Localization
min:
: max
Winner_takes_all: plastid
Predictor Summary:
Predictor Summary:
- plastid 3
- cytosol 1
- mitochondrion 1
- extracellular 1
- endoplasmic reticulum 1
- vacuole 1
- plasma membrane 1
- golgi 1
- nucleus 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra015501.1-P | Field mustard | plastid | 86.99 | 97.69 |
| CDY10200 | Canola | mitochondrion, plastid | 92.81 | 93.45 |
| CDY15579 | Canola | plastid | 43.84 | 84.21 |
| AT1G06460.1 | Thale cress | nucleus, plastid | 65.07 | 66.67 |
| CDX86521 | Canola | plastid | 64.73 | 65.4 |
| KRH14447 | Soybean | cytosol | 37.33 | 41.76 |
| KRH73706 | Soybean | cytosol | 36.99 | 41.38 |
| VIT_12s0028g01390.t01 | Wine grape | cytosol, plastid | 35.62 | 40.15 |
| Solyc07g055720.2.1 | Tomato | nucleus | 32.19 | 39.5 |
| PGSC0003DMT400044530 | Potato | cytosol, nucleus, plastid | 31.85 | 37.2 |
| GSMUA_Achr3P03670_001 | Banana | plasma membrane | 27.4 | 31.13 |
Protein Annotations
| EnsemblPlants:CDY06642 | EnsemblPlantsGene:GSBRNA2T00122804001 | Gene3D:2.60.40.790 | InterPro:A-crystallin/Hsp20_dom | InterPro:HSP20-like_chaperone | InterPro:IPR002068 |
| InterPro:IPR008978 | PANTHER:PTHR43670 | PANTHER:PTHR43670:SF5 | PFAM:PF00011 | PFscan:PS01031 | ProteinID:CDY06642 |
| ProteinID:CDY06642.1 | SUPFAM:SSF49764 | UniParc:UPI0004EF2BA7 | MapMan:35.2 | : | : |
Description
BnaA10g04210D
Coordinates
chrLK031972:-:10705..12937
Molecular Weight (calculated)
31993.7 Da
IEP (calculated)
8.384
GRAVY (calculated)
-0.412
Length
292 amino acids
Sequence
(BLAST)
(BLAST)
001: MELDSTTARR RLAIVAAHFP VATNDPISTA SLVPLNCSGS LNSVIRRCDN KLSFARQASS EQGFFMKQAS PDETGTGGGI TLKNSVVRRC DNRLYFARQA
101: SSAQGLFMRQ ASTDEDAAST KCSATKTNCF PSSQQPLLSR PEYAPPQFSK AAAKNEFFVC SDSPYQQKED GLEKPYNPDL PKLANLGTVW SPRSNVAEYE
201: NNYLVAVELP GASINDIRVE VDNTNLTVTG RRTSVCQKVD ACTKGSIFGY HHKQEILQGP FKVSWPLPSN VNKDNVSAEF MDGILRVVIP KI
101: SSAQGLFMRQ ASTDEDAAST KCSATKTNCF PSSQQPLLSR PEYAPPQFSK AAAKNEFFVC SDSPYQQKED GLEKPYNPDL PKLANLGTVW SPRSNVAEYE
201: NNYLVAVELP GASINDIRVE VDNTNLTVTG RRTSVCQKVD ACTKGSIFGY HHKQEILQGP FKVSWPLPSN VNKDNVSAEF MDGILRVVIP KI
001: MEHESITARR RLAAFAAHFP ATSYDSASTA SLVPLNCSSS LNTVIQRCDN KISFARQASS EQGFFMRPAS PDDVLENLGM NLKNTVVRRG DNRLYFARQA
101: SSAQGFFMRQ ASTNERTIPH DAAASTKFSA TKTTGFDSSS PAYAAPHFSK PAKEDIFFPS LSPNLQKERP KLDLPKLANL GTVWSPRSNV AESTHSYVVA
201: IELPGASIND IRVEVDNTNL TVTGRRTSIC QKVDAGTKAS ILGYHKQEIL QGPFKVSWPL PSNVNKDNVS AEFMDGILRI VIPKL
101: SSAQGFFMRQ ASTNERTIPH DAAASTKFSA TKTTGFDSSS PAYAAPHFSK PAKEDIFFPS LSPNLQKERP KLDLPKLANL GTVWSPRSNV AESTHSYVVA
201: IELPGASIND IRVEVDNTNL TVTGRRTSIC QKVDAGTKAS ILGYHKQEIL QGPFKVSWPL PSNVNKDNVS AEFMDGILRI VIPKL
Arabidopsis Description
ACD32.1Alpha-crystallin domain 32.1 [Source:UniProtKB/TrEMBL;Acc:Q208N7]
SUBAcon: [plastid,nucleus]
SUBAcon: [plastid,nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.