Subcellular Localization
min:
: max
Winner_takes_all: mitochondrion, plastid
Predictor Summary:
Predictor Summary:
- plastid 3
- mitochondrion 3
- cytosol 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY06642 | Canola | plastid | 93.45 | 92.81 |
| CDY15579 | Canola | plastid | 43.1 | 82.24 |
| AT1G06460.1 | Thale cress | nucleus, plastid | 63.79 | 64.91 |
| CDX86521 | Canola | plastid | 62.41 | 62.63 |
| KRH14447 | Soybean | cytosol | 35.52 | 39.46 |
| KRH73706 | Soybean | cytosol | 35.17 | 39.08 |
| VIT_12s0028g01390.t01 | Wine grape | cytosol, plastid | 34.14 | 38.22 |
| Solyc07g055720.2.1 | Tomato | nucleus | 30.69 | 37.4 |
| PGSC0003DMT400044530 | Potato | cytosol, nucleus, plastid | 30.34 | 35.2 |
| GSMUA_Achr3P03670_001 | Banana | plasma membrane | 26.55 | 29.96 |
Protein Annotations
| EnsemblPlants:CDY10200 | EnsemblPlantsGene:GSBRNA2T00032019001 | Gene3D:2.60.40.790 | InterPro:A-crystallin/Hsp20_dom | InterPro:HSP20-like_chaperone | InterPro:IPR002068 |
| InterPro:IPR008978 | PANTHER:PTHR43670 | PANTHER:PTHR43670:SF5 | PFAM:PF00011 | PFscan:PS01031 | ProteinID:CDY10200 |
| ProteinID:CDY10200.1 | SEG:seg | SUPFAM:SSF49764 | UniParc:UPI0001BA38BA | UniProt:A0A078F6S6 | MapMan:35.2 |
Description
BnaC05g04430DBnaC05g04430D protein [Source:UniProtKB/TrEMBL;Acc:A0A078F6S6]
Coordinates
chrLK032001:-:518548..520998
Molecular Weight (calculated)
31586.2 Da
IEP (calculated)
8.569
GRAVY (calculated)
-0.394
Length
290 amino acids
Sequence
(BLAST)
(BLAST)
001: MELDSLTARR RLATVAAHFP LATNDPVSTA SLVPLNCSGS LSSVIRRCDN KLSFTRQASS EQGFFMKQAS PDEAGSGGGV TLKNSVVRRG DNRLYFARQA
101: SSAQGLFMRQ ASTDEDAAST KCSATKTSGF PSSQQPLLSR PEYAPPQFSK AAAKDEFFVC SDSPYQLKEG LEKPYNPDLP KLANLGTVWS PRSNVAEYEN
201: NYLVAVELPG ASINDIRVEV DNTNLTVTGR RTSVCQKVDA CTKGSIFGYQ KHEIQQGPFK VSWPFPSNVN KDNVAAEFMD GILRVVIPKI
101: SSAQGLFMRQ ASTDEDAAST KCSATKTSGF PSSQQPLLSR PEYAPPQFSK AAAKDEFFVC SDSPYQLKEG LEKPYNPDLP KLANLGTVWS PRSNVAEYEN
201: NYLVAVELPG ASINDIRVEV DNTNLTVTGR RTSVCQKVDA CTKGSIFGYQ KHEIQQGPFK VSWPFPSNVN KDNVAAEFMD GILRVVIPKI
001: MEHESITARR RLAAFAAHFP ATSYDSASTA SLVPLNCSSS LNTVIQRCDN KISFARQASS EQGFFMRPAS PDDVLENLGM NLKNTVVRRG DNRLYFARQA
101: SSAQGFFMRQ ASTNERTIPH DAAASTKFSA TKTTGFDSSS PAYAAPHFSK PAKEDIFFPS LSPNLQKERP KLDLPKLANL GTVWSPRSNV AESTHSYVVA
201: IELPGASIND IRVEVDNTNL TVTGRRTSIC QKVDAGTKAS ILGYHKQEIL QGPFKVSWPL PSNVNKDNVS AEFMDGILRI VIPKL
101: SSAQGFFMRQ ASTNERTIPH DAAASTKFSA TKTTGFDSSS PAYAAPHFSK PAKEDIFFPS LSPNLQKERP KLDLPKLANL GTVWSPRSNV AESTHSYVVA
201: IELPGASIND IRVEVDNTNL TVTGRRTSIC QKVDAGTKAS ILGYHKQEIL QGPFKVSWPL PSNVNKDNVS AEFMDGILRI VIPKL
Arabidopsis Description
ACD32.1Alpha-crystallin domain 32.1 [Source:UniProtKB/TrEMBL;Acc:Q208N7]
SUBAcon: [plastid,nucleus]
SUBAcon: [plastid,nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.