Factsheet for GSMUA_Achr3P03670_001

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane

Predictor Summary:

plastid 4
plasma membrane 2
nucleus 1
peroxisome 1
mitochondrion 1
extracellular 1
endoplasmic reticulum 1
vacuole 1
golgi 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plasma membrane
Any Predictor:	cytosol, mitochondrion, nucleus, peroxisome, plastid, secretory
BaCelLo:	plastid
iPSORT:	plastid
MultiLoc:	plasma membrane
Plant-mPloc:	nucleus, plastid
Predotar:	mitochondrion
PProwler:	peroxisome
TargetP:	secretory
WoLF PSORT:	plastid
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
GSMUA_Achr10P...
GSMUA_Achr2P22730_001
GSMUA_Achr6P01920_001
GSMUA_Achr6P09710_001
GSMUA_Achr8P18400_001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G06460.1	GSMUA_Achr6P01920_001	AT2G24860.1	21798944
AT1G06460.1	GSMUA_Achr10P...	AT5G38420.1	21798944
AT1G06460.1	GSMUA_Achr2P22730_001	AT5G38420.1	21798944
AT1G06460.1	GSMUA_Achr6P09710_001	AT5G38420.1	21798944
AT1G06460.1	GSMUA_Achr8P18400_001	AT5G38420.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH73706	Soybean	cytosol	39.3	38.7
CDY15579	Canola	plastid	22.57	38.16
KRH14447	Soybean	cytosol	38.13	37.55
VIT_12s0028g01390.t01	Wine grape	cytosol, plastid	37.35	37.07
Solyc07g055720.2.1	Tomato	nucleus	32.68	35.29
PGSC0003DMT400044530	Potato	cytosol, nucleus, plastid	33.46	34.4
Bra015501.1-P	Field mustard	plastid	30.74	30.38
AT1G06460.1	Thale cress	nucleus, plastid	31.52	28.42
CDX86521	Canola	plastid	31.52	28.03
CDY06642	Canola	plastid	31.13	27.4
CDY10200	Canola	mitochondrion, plastid	29.96	26.55
Bra030653.1-P	Field mustard	plastid	29.96	23.19

Protein Annotations

EnsemblPlants:GSMUA_Achr3P03670_001	EnsemblPlants:GSMUA_Achr3T03670_001	EnsemblPlantsGene:GSMUA_Achr3G03670_001	Gene3D:2.60.40.790	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005737	GO:GO:0005777	InterPro:A-crystallin/Hsp20_dom	InterPro:HSP20-like_chaperone	InterPro:IPR002068
InterPro:IPR008978	PANTHER:PTHR43670	PANTHER:PTHR43670:SF5	PFAM:PF00011	PFscan:PS01031	SUPFAM:SSF49764
UniParc:UPI000296F90F	UniProt:M0SBI5	MapMan:35.2	:	:	:

Description

Putative uncharacterized protein [Source:GMGC_GENE;Acc:GSMUA_Achr3G03670_001]

Coordinates

chr3:-:2386759..2390396

Molecular Weight (calculated)

28774.4 Da

IEP (calculated)

9.588

GRAVY (calculated)

-0.491

Length

257 amino acids

Sequence
(BLAST)

001: MVMIQSCKIS VTSTRFFLSL ELHVLSQNCS GTLGTLIQRR DNRLLFARQT PASRGRFMQQ VEISQETGSG GSQPNTLPNC FRSGGSASFQ NPGEPLFSRK
101: TMFDSTAPSS RTETPMKQGT MFSSYEAPLF ARENSARIEK QQLRCGGRRS CRGIEWSPRM DVTESGPKYV VTVELPGVRA TDVQVEVDDD SLRIMGKRLV
201: SQWRVANGCE GWKPTYHQRE ILEGPYRVAW PLPKDVNKDG VSAELMDGFL RVTLPKL

Best Arabidopsis Sequence Match ( AT1G06460.1 )
(BLAST)

001: MEHESITARR RLAAFAAHFP ATSYDSASTA SLVPLNCSSS LNTVIQRCDN KISFARQASS EQGFFMRPAS PDDVLENLGM NLKNTVVRRG DNRLYFARQA
101: SSAQGFFMRQ ASTNERTIPH DAAASTKFSA TKTTGFDSSS PAYAAPHFSK PAKEDIFFPS LSPNLQKERP KLDLPKLANL GTVWSPRSNV AESTHSYVVA
201: IELPGASIND IRVEVDNTNL TVTGRRTSIC QKVDAGTKAS ILGYHKQEIL QGPFKVSWPL PSNVNKDNVS AEFMDGILRI VIPKL

Arabidopsis Description

ACD32.1Alpha-crystallin domain 32.1 [Source:UniProtKB/TrEMBL;Acc:Q208N7]
SUBAcon: [plastid,nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.