CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

plastid 2
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, plastid
BaCelLo:	plastid
MultiLoc:	cytosol
Plant-mPloc:	plastid
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
KRG99964
KRG99965
KRH01757
KRH05342
KRH15458
KRH15687
KRH46925
KRH52306
KRH61641

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G06460.1	KRH05342	AT2G24860.1	21798944
AT1G06460.1	KRH15687	AT2G24860.1	21798944
AT1G06460.1	KRH52306	AT2G24860.1	21798944
AT1G06460.1	KRH61641	AT2G24860.1	21798944
AT1G06460.1	KRG99964	AT5G38420.1	21798944
AT1G06460.1	KRG99965	AT5G38420.1	21798944
AT1G06460.1	KRH01757	AT5G38420.1	21798944
AT1G06460.1	KRH15458	AT5G38420.1	21798944
AT1G06460.1	KRH46925	AT5G38420.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH14447	Soybean	cytosol	91.19	91.19
CDY15579	Canola	plastid	29.89	51.32
VIT_12s0028g01390.t01	Wine grape	cytosol, plastid	50.57	50.97
Solyc07g055720.2.1	Tomato	nucleus	40.23	44.12
PGSC0003DMT400044530	Potato	cytosol, nucleus, plastid	40.61	42.4
GSMUA_Achr3P03670_001	Banana	plasma membrane	38.7	39.3
Bra015501.1-P	Field mustard	plastid	37.16	37.31
CDY06642	Canola	plastid	41.38	36.99
CDY10200	Canola	mitochondrion, plastid	39.08	35.17
AT1G06460.1	Thale cress	nucleus, plastid	38.31	35.09
CDX86521	Canola	plastid	38.31	34.6
Bra030653.1-P	Field mustard	plastid	38.7	30.42

Protein Annotations

EMBL:ACUP02001288	EnsemblPlants:KRH73706	EnsemblPlantsGene:GLYMA_02G288700	EntrezGene:100785395	Gene3D:2.60.40.790	InterPro:A-crystallin/Hsp20_dom
InterPro:HSP20-like_chaperone	InterPro:IPR002068	InterPro:IPR008978	PANTHER:PTHR43670	PANTHER:PTHR43670:SF5	PFAM:PF00011
PFscan:PS01031	ProteinID:KRH73706	ProteinID:KRH73706.1	SUPFAM:SSF49764	UniParc:UPI0002337361	UniProt:I1JJ64
MapMan:35.2	:	:	:	:	:

Description

hypothetical protein

Coordinates

chr2:-:46881979..46885441

Molecular Weight (calculated)

28635.0 Da

IEP (calculated)

7.835

GRAVY (calculated)

-0.291

Length

261 amino acids

Sequence
(BLAST)

001: MESESVKRRI HMIAAHFAPN DDISTTHVLP MNCSGSLNSV LRRCDNKVYF ARQASASLGY FMRQTSIEEG GSTGFIAPKT HPGAAASEGP SNARAPCFAK
101: PARAESVFTN SVVQPMAQEQ GCDFSTLDPP TFARPSRQIR GDKLHSEKKA CYSEIGGIEW SPRMDVAESE GKYVIMVEVP GVSIGDIRVE VDDLKLYVKG
201: RRSTSSWTVA GCTNASLSSY HRREILYGPY EVIWPLPAGV NKDRISAEFL DGFLQIIVPK V

Best Arabidopsis Sequence Match ( AT1G06460.1 )
(BLAST)

001: MEHESITARR RLAAFAAHFP ATSYDSASTA SLVPLNCSSS LNTVIQRCDN KISFARQASS EQGFFMRPAS PDDVLENLGM NLKNTVVRRG DNRLYFARQA
101: SSAQGFFMRQ ASTNERTIPH DAAASTKFSA TKTTGFDSSS PAYAAPHFSK PAKEDIFFPS LSPNLQKERP KLDLPKLANL GTVWSPRSNV AESTHSYVVA
201: IELPGASIND IRVEVDNTNL TVTGRRTSIC QKVDAGTKAS ILGYHKQEIL QGPFKVSWPL PSNVNKDNVS AEFMDGILRI VIPKL

Arabidopsis Description

ACD32.1Alpha-crystallin domain 32.1 [Source:UniProtKB/TrEMBL;Acc:Q208N7]
SUBAcon: [plastid,nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.