Factsheet for GSMUA_Achr4P16770_001

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 4
mitochondrion 2
plastid 1
plasma membrane 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr5P08520_001	Banana	plastid	95.52	96.14
GSMUA_AchrUn_...	Banana	plasma membrane	75.63	95.66
GSMUA_AchrUn_...	Banana	cytosol	4.71	94.19
GSMUA_Achr4P18860_001	Banana	cytosol	88.13	93.58
KXG22761	Sorghum	plastid	92.5	92.98
EES07849	Sorghum	plastid	92.38	92.92
Zm00001d044614_P086	Maize	plastid	92.2	92.53
GSMUA_AchrUn_...	Banana	plasma membrane	91.74	92.49
Zm00001d023218_P064	Maize	plastid	91.86	91.86
TraesCS4A01G182300.1	Wheat	extracellular, golgi	91.45	91.66
TraesCS4D01G130900.1	Wheat	golgi, unclear	91.45	91.66
TraesCS5D01G158800.1	Wheat	plastid	90.92	91.51
TraesCS5B01G152300.1	Wheat	unclear	90.92	91.51
TraesCS5A01G153500.1	Wheat	golgi, unclear	90.92	91.51
Os11t0104900-00	Rice	plasma membrane	36.94	90.84
TraesCS4B01G136100.2	Wheat	golgi, unclear	91.16	90.47
Zm00001d005090_P106	Maize	plastid	91.39	90.34
GSMUA_Achr5P14240_001	Banana	cytosol, plasma membrane, plastid	91.16	89.9
Os11t0104866-00	Rice	plasma membrane	29.96	89.1
Os12t0104766-00	Rice	plasma membrane	29.96	89.1
Zm00001d052308_P046	Maize	cytosol, plastid	89.7	88.57
HORVU4Hr1G024710.4	Barley	plastid	90.98	87.82
HORVU5Hr1G048010.1	Barley	plastid	90.75	86.52
Zm00001d009915_P001	Maize	cytosol	12.04	85.54
Zm00001d043584_P001	Maize	cytosol	6.11	83.33
Zm00001d012897_P001	Maize	plastid	20.65	80.14
Zm00001d015676_P001	Maize	cytosol	12.97	79.93
GSMUA_AchrUn_...	Banana	cytosol	19.37	79.86
Os12t0104800-01	Rice	cytosol	5.58	78.69
GSMUA_Achr4P18870_001	Banana	peroxisome, plasma membrane, plastid	5.12	68.75
Zm00001d026086_P002	Maize	cytosol	9.02	65.4
Zm00001d012509_P003	Maize	cytosol	14.49	58.04

Protein Annotations

Gene3D:1.25.40.10	Gene3D:1.25.40.730	Gene3D:2.130.10.110	MapMan:22.1.1.1	InterPro:ARM-type_fold	InterPro:Clathrin_H-chain/VPS_repeat
InterPro:Clathrin_H-chain_N	InterPro:Clathrin_H-chain_linker_core	InterPro:Clathrin_H-chain_propeller_rpt	InterPro:Clathrin_heavy_chain	ncoils:Coil	GO:GO:0003674
GO:GO:0005198	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0005794	GO:GO:0005886	GO:GO:0005905	GO:GO:0006810	GO:GO:0006886
GO:GO:0008150	GO:GO:0009987	GO:GO:0016020	GO:GO:0016043	GO:GO:0016192	GO:GO:0030130
GO:GO:0030132	GO:GO:0030659	GO:GO:0031410	GO:GO:0032051	GO:GO:0048268	GO:GO:0071439
EnsemblPlantsGene:GSMUA_Achr4G16770_001	EnsemblPlants:GSMUA_Achr4P16770_001	EnsemblPlants:GSMUA_Achr4T16770_001	InterPro:IPR000547	InterPro:IPR011990	InterPro:IPR016025
UniProt:M0SPJ1	PFAM:PF00637	PFAM:PF01394	PFAM:PF09268	PFAM:PF13838	PIRSF:PIRSF002290
PFscan:PS50236	PANTHER:PTHR10292	PANTHER:PTHR10292:SF1	SMART:SM00299	SUPFAM:SSF48371	SUPFAM:SSF50989
InterPro:TPR-like_helical_dom_sf	UniParc:UPI00029491E3	SEG:seg	:	:	:

Description

Clathrin heavy chain 1 [Source:GMGC_GENE;Acc:GSMUA_Achr4G16770_001]

Coordinates

chr4:-:15319370..15335929

Molecular Weight (calculated)

194676.0 Da

IEP (calculated)

5.128

GRAVY (calculated)

-0.142

Length

1719 amino acids

Sequence
(BLAST)

0001: MAAANAPIVM REALTLPSIG INPQFITFTH VTMESDKYIC VRETSPQNSV VIVDMNMPMQ PLRRPITADS ALMNPNSRIL ALKAQIPGTT QDHLQIFNIE
0101: AKTKIKSHQM PEQVVFWKWI TPKMLGLVTQ TSVYHWSIEG ETEPIKMFDR AANLTNNQII NYKCDPTEKW LVLIGIAPGA PERPQLVKGN MQLFSLDQQR
0201: SQALEAHAAS FASFKVVGNE KPSLLICFSS KTLNAGQITS KLHVIELGAQ PGKPGFTKKQ ADLFFPPDFA DDFPVAMQIS QKYSLVYVIT KLGLLFVYDL
0301: ETATAVYRNR ISADPIFLTT EASNVGGFYA INRKGQVLLA TVNEAAIVPF VSGQLNNLEL AINLAKRGNL PGAENLVVQR FQELFSQTKY KEAAELAAES
0401: PQGILRTPET VAKFQSVPVQ AGQTPPLLQY FGTLLTRGKL NGFESLELSR LVVNQNKKNL LENWLAEDKL ECSEELGDLV KTVDNDLALK IYIKARATPK
0501: VVAAFAERRE FDKILIYSKQ VGYTPDYLFL LQTILRSDPQ GAVNFALMMS QMEGGCPVDY NTITDLFLQR NMIREATAFL LDVLKPNLPE HAFLQTKVLE
0601: INLVTYPNVA DAILANGMFS HYDRPRIAQL CEKAGLYVRA LQHYTELPDI KRVIVNTHAI EPQALVEFFG TLSREWALEC MKDLLLVNLR GNLQIIVQTA
0701: KEYSDQLGVD ACIKLFEQFK SYEGLYFFLG SYLSSSEDPD IHFKYIEAAA KTGQLKEVER VTRESNFYDP EKTKNFLMEA KLPDARPLIN VCDRFGFVPD
0801: LTHYLYTNNM LRYIEGYVQK VNPGNAPLVV GQLLDDECPE DFIKGLILSV RSLLPVEPLV AECEKRNRLR LLTQFLEHLV SEGSQDVHVH NALGKIIIDS
0901: NNNPEHFLTT NPYYDSRVVG KYCEKRDPTL AVVAYRRGQC DDELINVTNK NSLFKLQARY VVERMDADLW EKVLQPENEY RRQLIDQVVS TALPESKSPE
1001: QVSAAVKAFM TADLPHELIE LLEKIVLQNS AFSGNFNLQN LLILTAIKAD PPRVMDYINR LDNFDGPAVG EVAVEAQLYE EAFAIFKKFN LNVQAVNVLL
1101: DNIQSIERAV EFAFRVEEDA VWSQVAKAQL RAGLVSDAIE SFIRADDETQ FLDVIRAAED ANVYHDLVKY LLMVRQKTKE PKVDGELIFA YAKIDRLGEI
1201: EEFILMPNVA NLQNVGDRLF DDALYEAAKI IFAFISNWAK LACTLVKLKQ FQGAVDAARK ANSTKTWKEV CFACVDAEEF RLAQICGLNI IIQVDDLEEV
1301: SEYYQNRGCF NELISLMESG LGLERAHMGI FTELGVLYAR YRPETLMEHI KLFSTRLNIP KLIRVCDEQQ HWKELTYLYI QYDEFDNAAT TIMNHSPDAW
1401: DHMQFKDVVV KVANVELYYK AVHFYLQEHP DLINDVLHVL ALRVDHTRVV DIMRKAGHLH LVKPYMVAVQ SNNVAAVNEA LNEIYVEEED YDRLRESVDL
1501: HDNFDQIGLA QRIEKHELLE MRRIAAYIYK KAGRWKQSIA LSKKDNLYKD AMETCSQSGD RELSEELLVY FIEQGKKECF ASCLFICYDL IRPDVALELA
1601: WMNNMIDFAF PYLLQFIREY ASKVDELVKD KIEAQNEVKS KEKVEKDLVA QQNMYAQLLP LALPAPPMPS MGGSNMGGPY GAPPPMPGMG MPPPMPGMGM
1701: PGMGMPPMPP FGMPPMENY

Best Arabidopsis Sequence Match ( AT3G11130.1 )
(BLAST)

0001: MAAANAPIIM KEVLTLPSVG IGQQFITFTN VTMESDKYIC VRETAPQNSV VIIDMNMPMQ PLRRPITADS ALMNPNSRIL ALKAQVPGTT QDHLQIFNIE
0101: AKAKLKSHQM PEQVAFWKWI TPKMLGLVTQ TSVYHWSIEG DSEPVKMFDR TANLANNQII NYKCSPNEKW LVLIGIAPGS PERPQLVKGN MQLFSVDQQR
0201: SQALEAHAAS FAQFKVPGNE NPSILISFAS KSFNAGQITS KLHVIELGAQ PGKPSFTKKQ ADLFFPPDFA DDFPVAMQVS HKFNLIYVIT KLGLLFVYDL
0301: ETASAIYRNR ISPDPIFLTS EASSVGGFYA INRRGQVLLA TVNEATIIPF ISGQLNNLEL AVNLAKRGNL PGAENLVVQR FQELFAQTKY KEAAELAAES
0401: PQGILRTPDT VAKFQSVPVQ AGQTPPLLQY FGTLLTRGKL NSYESLELSR LVVNQNKKNL LENWLAEDKL ECSEELGDLV KTVDNDLALK IYIKARATPK
0501: VVAAFAERRE FDKILIYSKQ VGYTPDYMFL LQTILRTDPQ GAVNFALMMS QMEGGCPVDY NTITDLFLQR NLIREATAFL LDVLKPNLPE HAFLQTKVLE
0601: INLVTFPNVA DAILANGMFS HYDRPRVAQL CEKAGLYIQS LKHYSELPDI KRVIVNTHAI EPQALVEFFG TLSSEWAMEC MKDLLLVNLR GNLQIIVQAC
0701: KEYCEQLGVD ACIKLFEQFK SYEGLYFFLG SYLSMSEDPE IHFKYIEAAA KTGQIKEVER VTRESNFYDA EKTKNFLMEA KLPDARPLIN VCDRFGFVPD
0801: LTHYLYTNNM LRYIEGYVQK VNPGNAPLVV GQLLDDECPE DFIKGLILSV RSLLPVEPLV AECEKRNRLR LLTQFLEHLV SEGSQDVHVH NALGKIIIDS
0901: NNNPEHFLTT NPYYDSKVVG KYCEKRDPTL AVVAYRRGQC DEELINVTNK NSLFKLQARY VVERMDGDLW EKVLTEENEY RRQLIDQVVS TALPESKSPE
1001: QVSAAVKAFM TADLPHELIE LLEKIVLQNS AFSGNFNLQN LLILTAIKAD PSRVMDYINR LDNFDGPAVG EVAVDAQLYE EAFAIFKKFN LNVQAVNVLL
1101: DNVRSIERAV EFAFRVEEDA VWSQVAKAQL REGLVSDAIE SFIRADDTTQ FLEVIRASED TNVYDDLVRY LLMVRQKVKE PKVDSELIYA YAKIERLGEI
1201: EEFILMPNVA NLQHVGDRLY DEALYEAAKI IYAFISNWAK LAVTLVKLQQ FQGAVDAARK ANSAKTWKEV CFACVDAEEF RLAQICGLNI IIQVDDLEEV
1301: SEYYQNRGCF NELISLMESG LGLERAHMGI FTELGVLYAR YRYEKLMEHI KLFSTRLNIP KLIRACDEQQ HWQELTYLYI QYDEFDNAAT TVMNHSPEAW
1401: EHMQFKDIVA KVANVELYYK AVHFYLQEHP DIINDLLNVL ALRLDHTRVV DIMRKAGHLR LIKPYMVAVQ SNNVSAVNEA LNEIYAEEED YDRLRESIDL
1501: HDSFDQIGLA QKIEKHELVE MRRVAAYIYK KAGRWKQSIA LSKKDNMYKD CMETASQSGD HDLAEQLLVY FIEQGKKECF ATCLFVCYDL IRPDVALELA
1601: WINNMIDFAF PYLLQFIREY SGKVDELIKD KLEAQKEVKA KEQEEKDVMS QQNMYAQLLP LALPAPPMPG MGGGGYGPPP QMGGMPGMSG MPPMPPYGMP
1701: PMGGY

Arabidopsis Description

CHC1Clathrin heavy chain 1 [Source:UniProtKB/Swiss-Prot;Acc:Q0WNJ6]
SUBAcon: [plasma membrane,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.