Factsheet for GSMUA_AchrUn_randomP01480_001

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane

Predictor Summary:

cytosol 3
extracellular 3
endoplasmic reticulum 3
vacuole 3
plasma membrane 5
golgi 3

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plasma membrane
Any Predictor:	cytosol, secretory
BaCelLo:	cytosol
EpiLoc:	cytosol
iPSORT:	secretory
MultiLoc:	cytosol
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	plasma membrane
YLoc:	plasma membrane

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_AchrUn_...	Banana	plasma membrane	76.48	95.95
GSMUA_Achr4P18860_001	Banana	cytosol	89.27	94.01
GSMUA_Achr5P08520_001	Banana	plastid	92.55	92.39
GSMUA_Achr4P16770_001	Banana	cytosol	92.49	91.74
Os11t0104900-00	Rice	plasma membrane	37.01	90.27
KXG22761	Sorghum	plastid	88.92	88.66
EES07849	Sorghum	plastid	88.86	88.65
Zm00001d044614_P086	Maize	plastid	88.62	88.21
Zm00001d023218_P064	Maize	plastid	88.27	87.55
TraesCS5D01G158800.1	Wheat	plastid	87.45	87.3
TraesCS5B01G152300.1	Wheat	unclear	87.45	87.3
TraesCS5A01G153500.1	Wheat	golgi, unclear	87.45	87.3
TraesCS4A01G182300.1	Wheat	extracellular, golgi	87.74	87.23
TraesCS4D01G130900.1	Wheat	golgi, unclear	87.74	87.23
GSMUA_Achr5P14240_001	Banana	cytosol, plasma membrane, plastid	88.33	86.4
TraesCS4B01G136100.2	Wheat	golgi, unclear	87.74	86.37
Zm00001d005090_P106	Maize	plastid	87.74	86.03
Zm00001d052308_P046	Maize	cytosol, plastid	86.45	84.66
HORVU4Hr1G024710.4	Barley	plastid	87.74	84.0
Zm00001d009915_P001	Maize	cytosol	11.85	83.47
Zm00001d043584_P001	Maize	cytosol	6.16	83.33
HORVU5Hr1G048010.1	Barley	plastid	87.39	82.64
Zm00001d012897_P001	Maize	plastid	20.59	79.23
Zm00001d015676_P001	Maize	cytosol	12.84	78.49
Os12t0104766-00	Rice	plasma membrane	26.28	77.51
Os11t0104866-00	Rice	plasma membrane	26.28	77.51
Os12t0104800-01	Rice	cytosol	5.51	77.05
Zm00001d026086_P002	Maize	cytosol	8.8	63.29
GSMUA_AchrUn_...	Banana	cytosol	15.19	62.11
Zm00001d012509_P003	Maize	cytosol	14.19	56.41
GSMUA_Achr4P18870_001	Banana	peroxisome, plasma membrane, plastid	1.35	17.97
GSMUA_AchrUn_...	Banana	cytosol	0.53	10.47

Protein Annotations

Gene3D:1.25.40.10	Gene3D:1.25.40.730	Gene3D:2.130.10.110	MapMan:22.1.1.1	InterPro:ARM-type_fold	InterPro:Clathrin_H-chain/VPS_repeat
InterPro:Clathrin_H-chain_N	InterPro:Clathrin_H-chain_linker_core	InterPro:Clathrin_H-chain_propeller_rpt	InterPro:Clathrin_heavy_chain	ncoils:Coil	GO:GO:0003674
GO:GO:0005198	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0005794	GO:GO:0005886	GO:GO:0005905	GO:GO:0006810	GO:GO:0006886
GO:GO:0008150	GO:GO:0009987	GO:GO:0016020	GO:GO:0016021	GO:GO:0016043	GO:GO:0016192
GO:GO:0030130	GO:GO:0030132	GO:GO:0030659	GO:GO:0031410	GO:GO:0032051	GO:GO:0048268
GO:GO:0071439	EnsemblPlantsGene:GSMUA_AchrUn_randomG01480_001	EnsemblPlants:GSMUA_AchrUn_randomP01480_001	EnsemblPlants:GSMUA_AchrUn_randomT01480_001	InterPro:IPR000547	InterPro:IPR011990
InterPro:IPR016025	UniProt:M0U5G0	PFAM:PF00637	PFAM:PF01394	PFAM:PF09268	PFAM:PF13838
PIRSF:PIRSF002290	PFscan:PS50236	PANTHER:PTHR10292	PANTHER:PTHR10292:SF1	SMART:SM00299	SUPFAM:SSF48371
SUPFAM:SSF50989	TMHMM:TMhelix	InterPro:TPR-like_helical_dom_sf	UniParc:UPI00029614A7	SEG:seg	:

Description

Clathrin heavy chain 1 [Source:GMGC_GENE;Acc:GSMUA_AchrUn_randomG01480_001]

Coordinates

chrchrUn_random:-:5938222..5952146

Molecular Weight (calculated)

193838.0 Da

IEP (calculated)

5.153

GRAVY (calculated)

-0.101

Length

1705 amino acids

Sequence
(BLAST)

0001: MIHIGSCFHE NIYHYVISLI LMMLILGVLY IFIYTSVEIQ LLLFSLLYYA GSLILLVLRE KFHVADPKVQ IPIGSVCTEK VFLSQIPGTT QDHLQVFNIE
0101: AKTKIKSHQM PEQVVFWKWI TPKMLGLVTQ TSVYHWSIEG ESEPVKMFDR AANLTNNQII NYKCDPTEKW LVLIGIAPGV PERPQLVKGN MQLFSVEQQR
0201: SQALEAHAAS FASFKVVGNE KPSILICFAS KTSNAGQISS KLHIIELGAQ PGKPGFTKKQ ADLFFPPDFA DDFPVAMQIS QKYSLIYVIT KLGLLFVYDL
0301: DTATAVYRNR ISPDPIFLTT EASNVGGFYA VNRRGQVLLA TVNEATIVPF VSGQLNNLEL AVNLAKRGNL PGAENLVVQR FQELFSQTKY KEAAELAAES
0401: PQGILRTPET VAKFQSVPVQ AGQTPPLLQY FGTLLTKGKL NAFESLELSR LVVNQNKKNL LENWLAEDKL ECSEELGDLV KTVDNDLALK IYIKARATPK
0501: VVAAFAERRE FDKILIYSNQ VGYTPDYLFL LQTILRSDPQ AAVNFALMMS QMEGGCPVDY NTITDLFLQR NMIREATRFL LDVLKPNLPE HAFLQTKVLE
0601: INLVTYPNVA DAILANGMFS HYDRPRIAQL CEKAGLYVRA LQHYTELPDI KRVIVNTQAI EPQALVEFFG TLSKEWALEC MKDLLLVNLR GNLQIIVQTA
0701: KEYSEQLGVD ACIKLFEQFK SYEGLYFFLG SYLSSSEDSD IHFKYIEAAA KTGQLKEVER VTRESNFYDP EKTKNFLMEA KLPDARPLIN VCDRFGFVPD
0801: LTHYLYTNNM LRYIEGYVQK VNPGNAPLVV GQLLDDECPE DFIKGLILSV RSLLPVEPLV AECEKRNRLR LLTQFLEHLV SEGSQDVHVH NALGKIIIDS
0901: NNNPEHFLTT NPYYDSRVVG KYCEKRDPTL AVVAYRRGQC DDELINVTNK NSLFKLQARY VVERMDADLW EKVLQPENEY RRQLIDQVVS TALPESKSPE
1001: QVSAAVKAFM TADLPHELIE LLEKIVLQNS AFSGNFNLQN LLILTAIKAD PPRVMDYINR LDNFDGPAVG EVAVEAQLYE EAFAIFKKFN LNVQAVNVLL
1101: DNIQSIERAV EFAFRVEEDA VWSQVAKAQL REGLVSDAIE SFIRADDETQ FHDVIRAAED ANVYHDLVKY LLMVRQKVKE PKVDGELIFA YAKIDRLGEI
1201: EEFILMPNVA NLQNVGDRLF DDALYEAAKI IFAFISNWAK LACTLVKLKQ FQGAVDAARK ANSSKTWKEV CFACVDAEEF RLAQICGLNI IIQVDDLEEV
1301: SDYYQNRGCF NELISLMESG LGLERAHMGI FTELGVLYAR YRPEKLMEHI KLFSTRLNIP KLIRVCDEQH HWKELTYLYI QYDEFDNAAT TIMNHSPDAW
1401: DHMQFKDVIV KVANVELYYK AVHFYLQEHP DLINDVLHVL ALRVDHTRVV DIMRKAGYLH IVKPYMVAVQ SNNVAAVNEA LNEIYVEEED YDRLRESVDL
1501: HDNFDQIGLA QRIEKHELLE MRRIAAYIYK KAGRWKQSIA LSKKDNLYKD AMETCSQSGD RELSEELLVY FIEQGKKECF ASCLFICYDL IRPDVALELA
1601: WMNNMIDFAF PYLLQFIREY TSKVDDLVKD KIEAQNEVKS KEKEEKDLVA QQNMYAQLLP LALPAPPMPG MGAPSMGGSY PVPPPMPGMG MPPMPPFGMP
1701: PMGSY

Best Arabidopsis Sequence Match ( AT3G11130.1 )
(BLAST)

0001: MAAANAPIIM KEVLTLPSVG IGQQFITFTN VTMESDKYIC VRETAPQNSV VIIDMNMPMQ PLRRPITADS ALMNPNSRIL ALKAQVPGTT QDHLQIFNIE
0101: AKAKLKSHQM PEQVAFWKWI TPKMLGLVTQ TSVYHWSIEG DSEPVKMFDR TANLANNQII NYKCSPNEKW LVLIGIAPGS PERPQLVKGN MQLFSVDQQR
0201: SQALEAHAAS FAQFKVPGNE NPSILISFAS KSFNAGQITS KLHVIELGAQ PGKPSFTKKQ ADLFFPPDFA DDFPVAMQVS HKFNLIYVIT KLGLLFVYDL
0301: ETASAIYRNR ISPDPIFLTS EASSVGGFYA INRRGQVLLA TVNEATIIPF ISGQLNNLEL AVNLAKRGNL PGAENLVVQR FQELFAQTKY KEAAELAAES
0401: PQGILRTPDT VAKFQSVPVQ AGQTPPLLQY FGTLLTRGKL NSYESLELSR LVVNQNKKNL LENWLAEDKL ECSEELGDLV KTVDNDLALK IYIKARATPK
0501: VVAAFAERRE FDKILIYSKQ VGYTPDYMFL LQTILRTDPQ GAVNFALMMS QMEGGCPVDY NTITDLFLQR NLIREATAFL LDVLKPNLPE HAFLQTKVLE
0601: INLVTFPNVA DAILANGMFS HYDRPRVAQL CEKAGLYIQS LKHYSELPDI KRVIVNTHAI EPQALVEFFG TLSSEWAMEC MKDLLLVNLR GNLQIIVQAC
0701: KEYCEQLGVD ACIKLFEQFK SYEGLYFFLG SYLSMSEDPE IHFKYIEAAA KTGQIKEVER VTRESNFYDA EKTKNFLMEA KLPDARPLIN VCDRFGFVPD
0801: LTHYLYTNNM LRYIEGYVQK VNPGNAPLVV GQLLDDECPE DFIKGLILSV RSLLPVEPLV AECEKRNRLR LLTQFLEHLV SEGSQDVHVH NALGKIIIDS
0901: NNNPEHFLTT NPYYDSKVVG KYCEKRDPTL AVVAYRRGQC DEELINVTNK NSLFKLQARY VVERMDGDLW EKVLTEENEY RRQLIDQVVS TALPESKSPE
1001: QVSAAVKAFM TADLPHELIE LLEKIVLQNS AFSGNFNLQN LLILTAIKAD PSRVMDYINR LDNFDGPAVG EVAVDAQLYE EAFAIFKKFN LNVQAVNVLL
1101: DNVRSIERAV EFAFRVEEDA VWSQVAKAQL REGLVSDAIE SFIRADDTTQ FLEVIRASED TNVYDDLVRY LLMVRQKVKE PKVDSELIYA YAKIERLGEI
1201: EEFILMPNVA NLQHVGDRLY DEALYEAAKI IYAFISNWAK LAVTLVKLQQ FQGAVDAARK ANSAKTWKEV CFACVDAEEF RLAQICGLNI IIQVDDLEEV
1301: SEYYQNRGCF NELISLMESG LGLERAHMGI FTELGVLYAR YRYEKLMEHI KLFSTRLNIP KLIRACDEQQ HWQELTYLYI QYDEFDNAAT TVMNHSPEAW
1401: EHMQFKDIVA KVANVELYYK AVHFYLQEHP DIINDLLNVL ALRLDHTRVV DIMRKAGHLR LIKPYMVAVQ SNNVSAVNEA LNEIYAEEED YDRLRESIDL
1501: HDSFDQIGLA QKIEKHELVE MRRVAAYIYK KAGRWKQSIA LSKKDNMYKD CMETASQSGD HDLAEQLLVY FIEQGKKECF ATCLFVCYDL IRPDVALELA
1601: WINNMIDFAF PYLLQFIREY SGKVDELIKD KLEAQKEVKA KEQEEKDVMS QQNMYAQLLP LALPAPPMPG MGGGGYGPPP QMGGMPGMSG MPPMPPYGMP
1701: PMGGY

Arabidopsis Description

CHC1Clathrin heavy chain 1 [Source:UniProtKB/Swiss-Prot;Acc:Q0WNJ6]
SUBAcon: [plasma membrane,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.