Factsheet for Zm00001d052308_P046

Subcellular Localization

min:

: max

Winner_takes_all: plastid, cytosol

Predictor Summary:

mitochondrion 2
cytosol 2
plastid 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, plastid
Any Predictor:	cytosol, mitochondrion, plastid
iPSORT:	mitochondrion
MultiLoc:	cytosol
PProwler:	mitochondrion
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d023218_P064	Maize	plastid	94.95	96.16
EES07849	Sorghum	plastid	94.37	96.14
Zm00001d044614_P086	Maize	plastid	94.37	95.91
KXG22761	Sorghum	plastid	94.2	95.91
Zm00001d005090_P106	Maize	plastid	94.26	94.36
TraesCS5A01G153500.1	Wheat	golgi, unclear	92.25	94.03
TraesCS5B01G152300.1	Wheat	unclear	92.25	94.03
TraesCS5D01G158800.1	Wheat	plastid	92.13	93.91
TraesCS4A01G182300.1	Wheat	extracellular, golgi	92.3	93.7
TraesCS4D01G130900.1	Wheat	golgi, unclear	92.19	93.59
TraesCS4B01G136100.2	Wheat	golgi, unclear	92.07	92.55
HORVU4Hr1G024710.4	Barley	plastid	92.19	90.12
GSMUA_Achr5P08520_001	Banana	plastid	88.4	90.11
GSMUA_Achr4P16770_001	Banana	cytosol	88.57	89.7
GSMUA_Achr4P18860_001	Banana	cytosol	82.88	89.13
GSMUA_AchrUn_...	Banana	plasma membrane	69.5	89.04
HORVU5Hr1G048010.1	Barley	plastid	92.07	88.91
GSMUA_Achr5P14240_001	Banana	cytosol, plasma membrane, plastid	87.77	87.66
Zm00001d043584_P001	Maize	cytosol	6.26	86.51
GSMUA_AchrUn_...	Banana	plasma membrane	84.66	86.45
Zm00001d012897_P001	Maize	plastid	21.37	83.97
Zm00001d021067_P001	Maize	cytosol, mitochondrion	19.47	76.52
Zm00001d009915_P001	Maize	cytosol	10.63	76.45
Zm00001d015676_P001	Maize	cytosol	11.55	72.04
Zm00001d012509_P003	Maize	cytosol	13.61	55.24
Zm00001d026086_P002	Maize	cytosol	7.35	54.01

Protein Annotations

Gene3D:1.25.40.10	Gene3D:1.25.40.730	EntrezGene:103654268	Gene3D:2.130.10.110	MapMan:22.1.1.1	UniProt:A0A1D6QFM0
ProteinID:AQK56853.1	InterPro:ARM-type_fold	InterPro:Clathrin_H-chain/VPS_repeat	InterPro:Clathrin_H-chain_N	InterPro:Clathrin_H-chain_linker_core	InterPro:Clathrin_H-chain_propeller_rpt
InterPro:Clathrin_heavy_chain	ncoils:Coil	GO:GO:0003674	GO:GO:0005198	GO:GO:0005488	GO:GO:0005515
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005794	GO:GO:0005886
GO:GO:0005905	GO:GO:0006810	GO:GO:0006886	GO:GO:0008150	GO:GO:0009987	GO:GO:0016020
GO:GO:0016043	GO:GO:0016192	GO:GO:0030130	GO:GO:0030132	GO:GO:0030659	GO:GO:0031410
GO:GO:0032051	GO:GO:0048268	GO:GO:0071439	InterPro:IPR000547	InterPro:IPR011990	InterPro:IPR016025
PFAM:PF00637	PFAM:PF01394	PFAM:PF09268	PFAM:PF13838	PIRSF:PIRSF002290	PFscan:PS50236
PANTHER:PTHR10292	PANTHER:PTHR10292:SF1	SMART:SM00299	SUPFAM:SSF48371	SUPFAM:SSF50989	InterPro:TPR-like_helical_dom_sf
UniParc:UPI0008425095	EnsemblPlantsGene:Zm00001d052308	EnsemblPlants:Zm00001d052308_P046	EnsemblPlants:Zm00001d052308_T046	SEG:seg	:

Description

Clathrin heavy chain 2

Coordinates

chr4:+:186709954..186725132

Molecular Weight (calculated)

198252.0 Da

IEP (calculated)

5.260

GRAVY (calculated)

-0.140

Length

1741 amino acids

Sequence
(BLAST)

0001: MAAANAPIAM REALTLTSLG IAPQFVTFTH VTMESEKYIC VRETSPQNSV VIIDMAMPMQ PLRRPITADS ALMNPNARIL ALKAQIPGTT QDHLQIFNIE
0101: AKTKIKSHQM PEQVVFWKWI TPKLLGLVTQ TSVYHWSIEG DSEPTKMFDR TANLANNQII NYRCDPAEKW LVLIGIAPGA PERPQLVKGN MQLFSVDQQR
0201: SQALEAHAAS FATFKVVGNE NPSTLICFAS KTTNAGQITS KLHVIELGAQ PDITIVLIDF LVVGKPGFSK KQADLFFPPD FQDDFPVAMQ VSQKYGLIYV
0301: ITKLGLLFVY DLETAAAVYR NRISPDPIFL TAESSSTGGF YAINRRGQVL HATVNDATVV PFVSGQLNNL ELAVNLAKRA NLPGAENLVV QRFQELFAQT
0401: KYKEAAELAA ESPQGLLRTP ETVAKFQSVP VQAGQTPPLL QYFGTLLTRG KLNAFESLEL SRLVVNQNKK NLLENWLAED KLECSEELGD LVKTVDNDLA
0501: LKIYIKARAT PKVVAAFAER REFDKILIYS KQVGYTPDYL FLLQTILRTD PQGAVNFALM MSQMEGGCPV DYNTITDLFL QRNMIREATA FLLDVLKPNL
0601: PEHAFLQTKV LEINLVTYPN VADAILANGM FSHYDRPRIA QLCEKAGLYL RALQHYSELP DIKRAIVNTH AIEPQALVEF FGTLSREWAL ECMKDLLLVN
0701: LRGNLQIVVQ AAKEYCEQLG VDACIKLFEQ FKSYEGLYFF LGSYLSSSED PDIHFKYIEA AARTGQIKEV ERVTRESNFY DAEKTKNFLM EAKLPDARPL
0801: INVCDRFGFV PDLTHYLYTN NMLRYIEGYV QKVNPGNAPL VVGQLLDDEC PEDFIKGLIL SVRSLLPVEP LVDECEKRNR LRLLTQFLEH LVSEGSQDVH
0901: VHNALGKIII DSNNNPEHFL TTNPFYDSRV VGKYCEKRDP TLAVVAYRRG QCDDELINVT NKNSLFKLQA RYVVERMDGD LWDKVLQPEN EYRRQLIDQV
1001: VSTALPESKS PEQVSAAVKA FMTADLPHEL IELLEKIVLQ NSAFSGNFNL QNLLILTAIK ADPSRVMDYV NRLDNFDGPA VGEVAVEAQL YEEAFAIFKK
1101: FNLNVQAVDV LLDNIRSIER AEEFAFRVEE DAVWSQVAKA QLREGLVSEA IESFIRADDA AHFLDVIRAA EEANVYNDLV KYLLMVRQKA REPKVDGELI
1201: FAYAKIDRLS DIEEFILMPN VANLQNVGDR LFEEELYEAA KIIYAFISNW AKLAVTLVKL KQFQGAVDAA RKANSAKTWK EVCFACVDAE EFRLAQICGL
1301: NIIVQVDDLE EVSEYYQNRG CFSELIALME SGLGLERAHM GIFTELGVLY ARYRSEKLME HIKLFSTRLN IPKLIRACDE QQHWKELTYL YIQYDEFDNA
1401: ATTIMNHSPD AWDHMQFKDV CVKVANVELY YKAVHFYLQE HPDLINDMLN VLALRLDHTR VVDIMRKAGQ LHLVKPYMVA VQSNNVSAVN EALNELYVEE
1501: EDYERLRESV DMHDNFDQIC LAQKLEKHEL LEMRRIAAYI YKKAGRWKQS IALSKKDNMY KDCMETCSQS GDRELSEDLL VYFIEQGKKE CFASCLFICY
1601: DLIRPDVALE LAWMNNMMDF AFPYLLQFIR EYTSKVDDLV KDKIESQKEE RAKEKEEKDL VAQQVNIKPI SGSRITCMRS CFLSLCPPRQ CLAWVALHLR
1701: WAEWACLRWV CRRCQHLGCH RWEATDLVLQ HKWNFIGVVD G

Best Arabidopsis Sequence Match ( AT3G08530.1 )
(BLAST)

0001: MAAANAPITM KEVLTLPSIG INQQFITFTN VTMESDKYIC VRETSPQNSV VIIDMNMPMQ PLRRPITADS ALMNPNSKIL ALKAQVPGTT QDHLQIFNIE
0101: AKAKLKSHQM PEQVVFWKWI TPKMLGLVTQ NSVYHWSIEG DSEPVKMFDR TANLANNQII NYKCSPNEKW LVLIGIAPGS PERQQLVKGN MQLFSVDQQR
0201: SQALEAHAAS FAQFKVPGNE NPSILISFAS KSFNAGQITS KLHVIELGAQ PGKPSFTKKQ ADLFFPPDFA DDFPVAMQVS HKFNLIYVIT KLGLLFVYDL
0301: ETASAIYRNR ISPDPIFLTS EASSVGGFYA INRRGQVLLA TVNEATIIPF ISGQLNNLEL AVNLAKRGNL PGAENLVVQR FQELFAQTKY KEAAELAAES
0401: PQGILRTPDT VAKFQSVPVQ AGQTPPLLQY FGTLLTRGKL NSYESLELSR LVVNQNKKNL LENWLAEDKL ECSEELGDLV KTVDNDLALK IYIKARATPK
0501: VVAAFAERRE FDKILIYSKQ VGYTPDYLFL LQTILRTDPQ GAVNFALMMS QMEGGSPVDY NTITDLFLQR NLIREATSFL LDVLKPNLPE HAFLQTKVLE
0601: INLVTFPNVA DAVLANGMFT HYDRPRIAQL CEKAGLYIQS LKHYSELPDI KRVIVNTHAI EPQALVEFFG TLSSEWAMEC MKDLLLVNLR GNLQIIVQAC
0701: KEYCEQLGVD ACIKLFEQFK SYEGLYFFLG SYLSMSEDPE IHFKYIEAAA KTGQIKEVER VTRESNFYDA EKTKNFLMEA KLPDARPLIN VCDRFSFVPD
0801: LTHYLYTNNM LRYIEGYVQK VNPGNAPLVV GQLLDDECPE DFIKGLILSV RSLLPVEPLV EECEKRNRLR LLTQFLEHLV SEGSQDVHVH NALGKIIIDS
0901: NNNPEHFLTT NPYYDSKVVG KYCEKRDPTL AVVAYRRGQC DEELINVTNK NSLFKLQARY VVERMDGDLW DKVLDENNDY RRQLIDQVVS TALPESKSPE
1001: QVSAAVKAFM TADLPHELIE LLEKIVLQNS AFSGNFNLQN LLILTAIKAD PSRVMDYINR LDNFDGPAVG EVAVEAQLYE EAFAIFKKFN LNVQAVNVLL
1101: DNVRSIERAV EFAFRVEEDS VWSQVAKAQL REGLVSDAIE SFIRADDATH FLEVIRVSED TDVYDDLVKY LLMVRQKVKE PKVDSELIYA YAKIDRLGEI
1201: EEFILMPNVA NLQHVGDRLY DEALYEAAKI IYAFISNWGK LAVTLVKLQQ FQGAVDAARK ANSAKTWKEV CFACVDAEEF RLAQICGLNI IIQVDDLEEV
1301: SEYYQNRGCF NELISLMESG LGLERAHMGI FTELGVLYAR YRYEKLMEHI KLFSTRLNIP KLIRACDEQQ HWQELTYLYI QYDEFDNAAT TVMNHSPEAW
1401: EHMQFKDIVA KVANVELYYK AVHFYLQEHP DIINDLLNVL ALRLDHTRVV DIMRKAGHLR LIKPYMIAVQ SNNVSAVNEA LNEIYVEEED YDRLRESIDL
1501: HDSFDQIGLA QKIEKHELVE MRRVAAYIYK KAGRWKQSIA LSKKDNMYKD CMETASQSGE HELAEQLLVY FIEQGKKECF ATCLFVCYDL IRPDVALELA
1601: WINNMMDFAF PYLLQFIREY SGKVDELIKD KLEAQKEVKA KEQEEKDVIS QQNMYAQMLP LALPAPPMPG MGGGGGYGPP PQMGGMPGMP PMPPYGMPPM
1701: GGY

Arabidopsis Description

CHC2Clathrin heavy chain 2 [Source:UniProtKB/Swiss-Prot;Acc:Q0WLB5]
SUBAcon: [plasma membrane,plastid,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.