Factsheet for Zm00001d005090_P106

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

mitochondrion 2
cytosol 1
plastid 2
plasma membrane 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	cytosol, mitochondrion, plasma membrane, plastid
iPSORT:	mitochondrion
MultiLoc:	cytosol
PProwler:	mitochondrion
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	plasma membrane

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EES07849	Sorghum	plastid	96.26	97.95
Zm00001d044614_P086	Maize	plastid	96.38	97.84
KXG22761	Sorghum	plastid	96.15	97.78
Zm00001d023218_P064	Maize	plastid	96.15	97.27
TraesCS4A01G182300.1	Wheat	extracellular, golgi	94.54	95.86
TraesCS5D01G158800.1	Wheat	plastid	94.13	95.84
TraesCS5B01G152300.1	Wheat	unclear	94.13	95.84
TraesCS5A01G153500.1	Wheat	golgi, unclear	94.13	95.84
TraesCS4D01G130900.1	Wheat	golgi, unclear	94.36	95.69
TraesCS4B01G136100.2	Wheat	golgi, unclear	94.08	94.46
Zm00001d052308_P046	Maize	cytosol, plastid	94.36	94.26
HORVU4Hr1G024710.4	Barley	plastid	94.19	91.97
GSMUA_Achr5P08520_001	Banana	plastid	89.76	91.39
GSMUA_Achr4P16770_001	Banana	cytosol	90.34	91.39
HORVU5Hr1G048010.1	Barley	plastid	94.02	90.68
GSMUA_AchrUn_...	Banana	plasma membrane	70.79	90.58
GSMUA_Achr4P18860_001	Banana	cytosol	84.19	90.43
Zm00001d009915_P001	Maize	cytosol	12.36	88.84
GSMUA_AchrUn_...	Banana	plasma membrane	86.03	87.74
GSMUA_Achr5P14240_001	Banana	cytosol, plasma membrane, plastid	87.64	87.44
Zm00001d043584_P001	Maize	cytosol	6.27	86.51
Zm00001d012897_P001	Maize	plastid	21.45	84.2
Zm00001d015676_P001	Maize	cytosol	13.34	83.15
Zm00001d021067_P001	Maize	cytosol, mitochondrion	19.44	76.3
Zm00001d026086_P002	Maize	cytosol	9.14	67.09
Zm00001d012509_P003	Maize	cytosol	15.35	62.24

Protein Annotations

Gene3D:1.25.40.10	Gene3D:1.25.40.730	Gene3D:2.130.10.110	MapMan:22.1.1.1	UniProt:A0A1D6EJH5	InterPro:ARM-type_fold
InterPro:Clathrin_H-chain/VPS_repeat	InterPro:Clathrin_H-chain_N	InterPro:Clathrin_H-chain_linker_core	InterPro:Clathrin_H-chain_propeller_rpt	InterPro:Clathrin_heavy_chain	ncoils:Coil
GO:GO:0003674	GO:GO:0005198	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005737	GO:GO:0005794	GO:GO:0005886	GO:GO:0005905	GO:GO:0006810
GO:GO:0006886	GO:GO:0008150	GO:GO:0009987	GO:GO:0016020	GO:GO:0016043	GO:GO:0016192
GO:GO:0030130	GO:GO:0030132	GO:GO:0030659	GO:GO:0031410	GO:GO:0032051	GO:GO:0048268
GO:GO:0071439	InterPro:IPR000547	InterPro:IPR011990	InterPro:IPR016025	ProteinID:ONM20156.1	PFAM:PF00637
PFAM:PF01394	PFAM:PF09268	PFAM:PF13838	PIRSF:PIRSF002290	PFscan:PS50236	PANTHER:PTHR10292
PANTHER:PTHR10292:SF1	SMART:SM00299	SUPFAM:SSF48371	SUPFAM:SSF50989	InterPro:TPR-like_helical_dom_sf	UniParc:UPI000844F5D8
EnsemblPlantsGene:Zm00001d005090	EnsemblPlants:Zm00001d005090_P106	EnsemblPlants:Zm00001d005090_T106	SEG:seg	:	:

Description

Clathrin heavy chain 2

Coordinates

chr2:-:157783039..157793398

Molecular Weight (calculated)

197199.0 Da

IEP (calculated)

4.989

GRAVY (calculated)

-0.151

Length

1739 amino acids

Sequence
(BLAST)

0001: MAAANAPIAM REALTLTSLG IAPQFVTFTH VTMESEKYIC VRETSPQNSV VIIDMAMPMQ PLRRPITADS ALMNPNTRIL ALKAQIPGTT QDHLQIFNIE
0101: AKTKIKSHQM PEQVVFWKWI TPKLLGLVTQ TSVYHWSIEG DSEPTKMFDR TANLANNQII NYRCDPAEKW LVLIGIAPGA PERPQLVKGN MQLFSVDQQR
0201: SQALEAHAAS FATFKVVGNE NPSTLICFAS KTTNAGQITS KLHVIELGAQ PGKPGFSKKQ ADLFFPPDFQ DDFPVAMQVS QKYGLIYVIT KLGLLFVYDL
0301: ETAAAVYRNR ISPDPIFLTA ESSSTGGFYA INRRGQVLHA TVNDATVVPF VSGQLNNLEL AVNLAKRANL PGAENLVVQR FQELFAQTKY KEAAELAAES
0401: PQGLLRTPET VAKFQSVPVQ AGQTPPLLQY FGTLLTRGKL NAFESLELSR LVVNQNKKNL LENWLAEDKL ECSEELGDLV KTVDNDLALK IYIKARATPK
0501: VVAAFAERRE FDKILIYSKQ VGYTPDYLFL LQTILRTDPQ GAVNFALMMS QMEGGCPVDY NTITDLFLQR NMIREATAFL LDVLKPNLPE HAFLQTKVLE
0601: INLVTYPNVA DAILANGMFS HYDRPRIAQL CEKAGLYLRA LQHYAELPDI KRAIVNTHAI EPQALVEFFG TLSREWALEC MKDLLLVNLR GNLQIVVQAA
0701: KEYSEQLGVD ACIKLFEQFK SYEGLYFFLG SYLSSSEDPE IHFKYIEAAA RTGQIKEVER VTRESNFYDA EKTKNFLMEA KLPDARPLIN VCDRFGFVPD
0801: LTHYLYTNNM LRYIEGYVQK VNPGNAPLVV GQLLDDECPE DFIKGLILSV RSLLPVEPLV DECEKRNRLR LLTQFLEHLV SEGSQDVHVH NALGKIIIDS
0901: NNNPEHFLTT NPFYDSRVVG KYCEKRDPTL AVVAYRRGQC DDELIIVTNK NSLFKLQARY VVERMDGDLW DKVLQPENEY RRQLIDQVVS TALPESKSPE
1001: QVSAAVKAFM TADLPHELIE LLEKIVLQNS AFSGNFNLQN LLILTAIKAD PSRVMDYVNR LDNFDGPAVG EVAVEAQLYE EAFAIFKKFN LNVQAVDVLL
1101: DNIRSIERAE EFAFRVEEDA VWSQVAKAQL REGLVSEAIE SFIRADDAAH FLDVIRAAEE ANVYNDLVKY LLMVRQKARE PKVDGELIFA YAKIDRLSDI
1201: EEFILMPNVA NLQNVGDRLY DEELYEAAKI IYAFISNWAK LAVTLVKLKQ FQGAVDAARK ANSAKTWKEV CFACVDAEEF RLAQICGLNI IIQVDDLEEV
1301: SEYYQNRGCF SELIALMESG LGLERAHMGI FTELGVLYAR YRSEKLMEHI KLFSTRLNIP KLIRACDEQQ HWKELTYLYI QYDEFDNAVT TIMNHSPDAW
1401: DHMQFKDVCV KVANVELYYK AVHFYLQEHP DLINDMLNVL ALRLDHTRVV DIMRKAGQLH LVKPYMVAVQ SNNVSAVNEA LNELYVEEED YERLRESVDM
1501: HDNFDQIGLA QKLEKHELLE MRRIAAYIYK KAGRWKQSIA LSKKDNMYKD CMETCSQSGD RELSEDLLVY FIEQGKKECF ASCLFICYDL IRPDVALELA
1601: WMNNMLDFAF PYLLQFIREY TSKVDDLVKD RIESQNEERV KEKEEKDLVA QQNMYAQLLP LALPAPPMPG MGGPPPPMGG MGMPPMGGPW SDASIRDASN
1701: GKLLRCFCSE GGNFIGVVDG YSLELIFFMV PEFFWQVKP

Best Arabidopsis Sequence Match ( AT3G08530.1 )
(BLAST)

0001: MAAANAPITM KEVLTLPSIG INQQFITFTN VTMESDKYIC VRETSPQNSV VIIDMNMPMQ PLRRPITADS ALMNPNSKIL ALKAQVPGTT QDHLQIFNIE
0101: AKAKLKSHQM PEQVVFWKWI TPKMLGLVTQ NSVYHWSIEG DSEPVKMFDR TANLANNQII NYKCSPNEKW LVLIGIAPGS PERQQLVKGN MQLFSVDQQR
0201: SQALEAHAAS FAQFKVPGNE NPSILISFAS KSFNAGQITS KLHVIELGAQ PGKPSFTKKQ ADLFFPPDFA DDFPVAMQVS HKFNLIYVIT KLGLLFVYDL
0301: ETASAIYRNR ISPDPIFLTS EASSVGGFYA INRRGQVLLA TVNEATIIPF ISGQLNNLEL AVNLAKRGNL PGAENLVVQR FQELFAQTKY KEAAELAAES
0401: PQGILRTPDT VAKFQSVPVQ AGQTPPLLQY FGTLLTRGKL NSYESLELSR LVVNQNKKNL LENWLAEDKL ECSEELGDLV KTVDNDLALK IYIKARATPK
0501: VVAAFAERRE FDKILIYSKQ VGYTPDYLFL LQTILRTDPQ GAVNFALMMS QMEGGSPVDY NTITDLFLQR NLIREATSFL LDVLKPNLPE HAFLQTKVLE
0601: INLVTFPNVA DAVLANGMFT HYDRPRIAQL CEKAGLYIQS LKHYSELPDI KRVIVNTHAI EPQALVEFFG TLSSEWAMEC MKDLLLVNLR GNLQIIVQAC
0701: KEYCEQLGVD ACIKLFEQFK SYEGLYFFLG SYLSMSEDPE IHFKYIEAAA KTGQIKEVER VTRESNFYDA EKTKNFLMEA KLPDARPLIN VCDRFSFVPD
0801: LTHYLYTNNM LRYIEGYVQK VNPGNAPLVV GQLLDDECPE DFIKGLILSV RSLLPVEPLV EECEKRNRLR LLTQFLEHLV SEGSQDVHVH NALGKIIIDS
0901: NNNPEHFLTT NPYYDSKVVG KYCEKRDPTL AVVAYRRGQC DEELINVTNK NSLFKLQARY VVERMDGDLW DKVLDENNDY RRQLIDQVVS TALPESKSPE
1001: QVSAAVKAFM TADLPHELIE LLEKIVLQNS AFSGNFNLQN LLILTAIKAD PSRVMDYINR LDNFDGPAVG EVAVEAQLYE EAFAIFKKFN LNVQAVNVLL
1101: DNVRSIERAV EFAFRVEEDS VWSQVAKAQL REGLVSDAIE SFIRADDATH FLEVIRVSED TDVYDDLVKY LLMVRQKVKE PKVDSELIYA YAKIDRLGEI
1201: EEFILMPNVA NLQHVGDRLY DEALYEAAKI IYAFISNWGK LAVTLVKLQQ FQGAVDAARK ANSAKTWKEV CFACVDAEEF RLAQICGLNI IIQVDDLEEV
1301: SEYYQNRGCF NELISLMESG LGLERAHMGI FTELGVLYAR YRYEKLMEHI KLFSTRLNIP KLIRACDEQQ HWQELTYLYI QYDEFDNAAT TVMNHSPEAW
1401: EHMQFKDIVA KVANVELYYK AVHFYLQEHP DIINDLLNVL ALRLDHTRVV DIMRKAGHLR LIKPYMIAVQ SNNVSAVNEA LNEIYVEEED YDRLRESIDL
1501: HDSFDQIGLA QKIEKHELVE MRRVAAYIYK KAGRWKQSIA LSKKDNMYKD CMETASQSGE HELAEQLLVY FIEQGKKECF ATCLFVCYDL IRPDVALELA
1601: WINNMMDFAF PYLLQFIREY SGKVDELIKD KLEAQKEVKA KEQEEKDVIS QQNMYAQMLP LALPAPPMPG MGGGGGYGPP PQMGGMPGMP PMPPYGMPPM
1701: GGY

Arabidopsis Description

CHC2Clathrin heavy chain 2 [Source:UniProtKB/Swiss-Prot;Acc:Q0WLB5]
SUBAcon: [plasma membrane,plastid,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.