Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- cytosol 5
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| GSMUA_AchrUn_... | Banana | plasma membrane | 78.32 | 93.3 |
| GSMUA_AchrUn_... | Banana | plasma membrane | 94.01 | 89.27 |
| GSMUA_Achr5P08520_001 | Banana | plastid | 93.89 | 88.99 |
| Os11t0104900-00 | Rice | plasma membrane | 38.11 | 88.27 |
| GSMUA_Achr4P16770_001 | Banana | cytosol | 93.58 | 88.13 |
| KXG22761 | Sorghum | plastid | 91.41 | 86.55 |
| EES07849 | Sorghum | plastid | 91.35 | 86.54 |
| GSMUA_Achr5P14240_001 | Banana | cytosol, plasma membrane, plastid | 92.84 | 86.23 |
| Zm00001d044614_P086 | Maize | plastid | 91.04 | 86.05 |
| TraesCS4A01G182300.1 | Wheat | extracellular, golgi | 90.49 | 85.42 |
| TraesCS4D01G130900.1 | Wheat | golgi, unclear | 90.49 | 85.42 |
| Zm00001d023218_P064 | Maize | plastid | 90.67 | 85.4 |
| TraesCS5D01G158800.1 | Wheat | plastid | 89.99 | 85.3 |
| TraesCS5B01G152300.1 | Wheat | unclear | 89.99 | 85.3 |
| TraesCS5A01G153500.1 | Wheat | golgi, unclear | 89.99 | 85.3 |
| TraesCS4B01G136100.2 | Wheat | golgi, unclear | 90.55 | 84.64 |
| Zm00001d005090_P106 | Maize | plastid | 90.43 | 84.19 |
| Zm00001d052308_P046 | Maize | cytosol, plastid | 89.13 | 82.88 |
| HORVU4Hr1G024710.4 | Barley | plastid | 90.49 | 82.26 |
| Zm00001d043584_P001 | Maize | cytosol | 6.36 | 81.75 |
| HORVU5Hr1G048010.1 | Barley | plastid | 89.81 | 80.64 |
| Zm00001d009915_P001 | Maize | cytosol | 11.86 | 79.34 |
| Zm00001d012897_P001 | Maize | plastid | 21.19 | 77.43 |
| Os12t0104766-00 | Rice | plasma membrane | 27.12 | 75.95 |
| Os11t0104866-00 | Rice | plasma membrane | 27.12 | 75.95 |
| Zm00001d015676_P001 | Maize | cytosol | 12.97 | 75.27 |
| Os12t0104800-01 | Rice | cytosol | 5.44 | 72.13 |
| Zm00001d026086_P002 | Maize | cytosol | 8.77 | 59.92 |
| GSMUA_AchrUn_... | Banana | cytosol | 14.7 | 57.07 |
| Zm00001d012509_P003 | Maize | cytosol | 14.45 | 54.55 |
| GSMUA_Achr4P18870_001 | Banana | peroxisome, plasma membrane, plastid | 0.93 | 11.72 |
| GSMUA_AchrUn_... | Banana | cytosol | 0.06 | 1.16 |
Protein Annotations
| Gene3D:1.25.40.10 | Gene3D:1.25.40.730 | Gene3D:2.130.10.110 | MapMan:22.1.1.1 | InterPro:ARM-type_fold | InterPro:Clathrin_H-chain/VPS_repeat |
| InterPro:Clathrin_H-chain_N | InterPro:Clathrin_H-chain_linker_core | InterPro:Clathrin_H-chain_propeller_rpt | InterPro:Clathrin_heavy_chain | ncoils:Coil | GO:GO:0003674 |
| GO:GO:0005198 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 |
| GO:GO:0005737 | GO:GO:0005794 | GO:GO:0005886 | GO:GO:0005905 | GO:GO:0006810 | GO:GO:0006886 |
| GO:GO:0008150 | GO:GO:0009987 | GO:GO:0016020 | GO:GO:0016043 | GO:GO:0016192 | GO:GO:0030130 |
| GO:GO:0030132 | GO:GO:0030659 | GO:GO:0031410 | GO:GO:0032051 | GO:GO:0048268 | GO:GO:0071439 |
| EnsemblPlantsGene:GSMUA_Achr4G18860_001 | EnsemblPlants:GSMUA_Achr4P18860_001 | EnsemblPlants:GSMUA_Achr4T18860_001 | InterPro:IPR000547 | InterPro:IPR011990 | InterPro:IPR016025 |
| UniProt:M0SQ49 | PFAM:PF00637 | PFAM:PF01394 | PFAM:PF09268 | PFAM:PF13838 | PIRSF:PIRSF002290 |
| PFscan:PS50236 | PANTHER:PTHR10292 | PANTHER:PTHR10292:SF1 | SMART:SM00299 | SUPFAM:SSF48371 | SUPFAM:SSF50989 |
| InterPro:TPR-like_helical_dom_sf | UniParc:UPI00029639F5 | SEG:seg | : | : | : |
Description
Clathrin heavy chain 1 [Source:GMGC_GENE;Acc:GSMUA_Achr4G18860_001]
Coordinates
chr4:-:19891616..19905092
Molecular Weight (calculated)
184046.0 Da
IEP (calculated)
5.041
GRAVY (calculated)
-0.140
Length
1619 amino acids
Sequence
(BLAST)
(BLAST)
0001: MQDHLQIFNI EQKTKIKSHQ MPEQVVFWKW INPKMLGLVT QASVYHWSIE GDSEPVKVFD RAANLTNNQI INYRCDPSEK WLVLIGIAPG APERPQLVKG
0101: NMQLFSVEQQ RSQALEAHAA SFATFKVVGK ENPSTLICFA SKTTNAGQIT SKLHVIELGA QPGKPGFTKK QADLFFPPDF ADDFPVAMQI SHKYSLIYVI
0201: TKLGLLFVYD LETATAVYRN RISPDPIFLT AEASTIGGFY AINRRGQVLL AAVNEATIVP FVSSQLNNLE LAVSLAKRGN LPGAENLVVQ RFQELFSQTK
0301: YKEAAELAAE SPQDILRTPE TVAKFQSVPV QAGQTPPLLQ YFGTLLTRGK LNAFESLELS RLVVNQNKKN LLENWLAEDK LECSEELGDL VKTVDNDLAL
0401: KIYIKARATP KVVAAFAERR EFDKILIYSK QVGYVPDYLF LLQTILRSDP QGAVNFALMM SQMEGGCPVD YNTITDIFLQ RNMIREATAF LLDVLKPNLP
0501: EHAFLQTKVL EINLVTYPNV ADAILANGMF THYDRPQIAQ LCEKAGLYMR ALQHYTELID IKRVIVNTHA IEPQALVEFF GTLSREWALE CMKDLLLVNL
0601: RANLQIIVQT AKEYSEQLGV DACIKLFEQF KSYEGLYFFL GSYLSSSEDP DIHFKYIEAA AKTGQIKEVE RVTRESNFYN PEKTKNFLME AKLPDARPLI
0701: NVCDRFGFVP DLTHFLYTNN MLRYIEGYVQ KVNPGNAPLV VGQLLDDECP EDFIKGLILS VRSLLPVESL VVECEKRNRL RLLTQFLEHL VSEGSQDAHV
0801: HNALGMIIID SNNNPEHFLT TNPYYDSRVV GKYCEKRDPT LAVVAYRRGQ CDDELINVTN KNSLFKLQAR YVVERMDADL WEKVLVPENE YRRQFIDQVV
0901: STALPESKNP EQVSAAVKAF MTADLPHELI ELLEKIVLQN SAFSGNFNLQ NLLILTSIKA DPSRVMDYIN RLDNFDGPAV GEVAIEAQLF EEAFAIFKKF
1001: NLNVQAVNVL LDNIQSIERA VEFAFHVEED SVWSQVGKAQ LREGLVSEAI ESFIRADDAT QFLDVIRAAE DSNIYHDLVK YLLMVRQTVK EPKVDSELIY
1101: AYAKIDRLGE IEEFILMPNV ANLQNVGDRL FDDALYEAAK IIFTFISNWA KLASTLVKLR QFQGAVDAAR KANSSKTWKE VCFACVDAEE FRLAQICGLN
1201: IIIQVDDLEE VSDYYQNRGC FNELISLMES GLGLERAHMG IFTELGVLYA RYRPEKLMEH IKLFSTRLNI PKLIRVCDEQ QHWQELTYLY IQYDEFDNAA
1301: TTIMNHSPDA WDHMQFKDVV IKVANVELYY KAVHFYLQEH PDLINDLLHV LALRVDHTRV VDIMRKAGHL HLVKPYMVAV QSNNVAAVNE ALNEIYVEEE
1401: DYDRLRESVD THDNFDQIGL AQRIEKHELL EMRRIAAYIY KKAGRWKQSI ALSKKDNLYK DAMETCSQSG DRELSEELLV YFIEKGKKEC FSSCLFICYD
1501: LIRPDVALEL AWMNNMLDFA FPYLLQFIRE YTSKVDELIK DKIEAQNEVK VKEKEEKDLV TQQACLNMYA QLLPLALPAP PIPGVGATGM GGPYPAPPPM
1601: AGMGMPPVPP FGMPPMGTY
0101: NMQLFSVEQQ RSQALEAHAA SFATFKVVGK ENPSTLICFA SKTTNAGQIT SKLHVIELGA QPGKPGFTKK QADLFFPPDF ADDFPVAMQI SHKYSLIYVI
0201: TKLGLLFVYD LETATAVYRN RISPDPIFLT AEASTIGGFY AINRRGQVLL AAVNEATIVP FVSSQLNNLE LAVSLAKRGN LPGAENLVVQ RFQELFSQTK
0301: YKEAAELAAE SPQDILRTPE TVAKFQSVPV QAGQTPPLLQ YFGTLLTRGK LNAFESLELS RLVVNQNKKN LLENWLAEDK LECSEELGDL VKTVDNDLAL
0401: KIYIKARATP KVVAAFAERR EFDKILIYSK QVGYVPDYLF LLQTILRSDP QGAVNFALMM SQMEGGCPVD YNTITDIFLQ RNMIREATAF LLDVLKPNLP
0501: EHAFLQTKVL EINLVTYPNV ADAILANGMF THYDRPQIAQ LCEKAGLYMR ALQHYTELID IKRVIVNTHA IEPQALVEFF GTLSREWALE CMKDLLLVNL
0601: RANLQIIVQT AKEYSEQLGV DACIKLFEQF KSYEGLYFFL GSYLSSSEDP DIHFKYIEAA AKTGQIKEVE RVTRESNFYN PEKTKNFLME AKLPDARPLI
0701: NVCDRFGFVP DLTHFLYTNN MLRYIEGYVQ KVNPGNAPLV VGQLLDDECP EDFIKGLILS VRSLLPVESL VVECEKRNRL RLLTQFLEHL VSEGSQDAHV
0801: HNALGMIIID SNNNPEHFLT TNPYYDSRVV GKYCEKRDPT LAVVAYRRGQ CDDELINVTN KNSLFKLQAR YVVERMDADL WEKVLVPENE YRRQFIDQVV
0901: STALPESKNP EQVSAAVKAF MTADLPHELI ELLEKIVLQN SAFSGNFNLQ NLLILTSIKA DPSRVMDYIN RLDNFDGPAV GEVAIEAQLF EEAFAIFKKF
1001: NLNVQAVNVL LDNIQSIERA VEFAFHVEED SVWSQVGKAQ LREGLVSEAI ESFIRADDAT QFLDVIRAAE DSNIYHDLVK YLLMVRQTVK EPKVDSELIY
1101: AYAKIDRLGE IEEFILMPNV ANLQNVGDRL FDDALYEAAK IIFTFISNWA KLASTLVKLR QFQGAVDAAR KANSSKTWKE VCFACVDAEE FRLAQICGLN
1201: IIIQVDDLEE VSDYYQNRGC FNELISLMES GLGLERAHMG IFTELGVLYA RYRPEKLMEH IKLFSTRLNI PKLIRVCDEQ QHWQELTYLY IQYDEFDNAA
1301: TTIMNHSPDA WDHMQFKDVV IKVANVELYY KAVHFYLQEH PDLINDLLHV LALRVDHTRV VDIMRKAGHL HLVKPYMVAV QSNNVAAVNE ALNEIYVEEE
1401: DYDRLRESVD THDNFDQIGL AQRIEKHELL EMRRIAAYIY KKAGRWKQSI ALSKKDNLYK DAMETCSQSG DRELSEELLV YFIEKGKKEC FSSCLFICYD
1501: LIRPDVALEL AWMNNMLDFA FPYLLQFIRE YTSKVDELIK DKIEAQNEVK VKEKEEKDLV TQQACLNMYA QLLPLALPAP PIPGVGATGM GGPYPAPPPM
1601: AGMGMPPVPP FGMPPMGTY
0001: MAAANAPIIM KEVLTLPSVG IGQQFITFTN VTMESDKYIC VRETAPQNSV VIIDMNMPMQ PLRRPITADS ALMNPNSRIL ALKAQVPGTT QDHLQIFNIE
0101: AKAKLKSHQM PEQVAFWKWI TPKMLGLVTQ TSVYHWSIEG DSEPVKMFDR TANLANNQII NYKCSPNEKW LVLIGIAPGS PERPQLVKGN MQLFSVDQQR
0201: SQALEAHAAS FAQFKVPGNE NPSILISFAS KSFNAGQITS KLHVIELGAQ PGKPSFTKKQ ADLFFPPDFA DDFPVAMQVS HKFNLIYVIT KLGLLFVYDL
0301: ETASAIYRNR ISPDPIFLTS EASSVGGFYA INRRGQVLLA TVNEATIIPF ISGQLNNLEL AVNLAKRGNL PGAENLVVQR FQELFAQTKY KEAAELAAES
0401: PQGILRTPDT VAKFQSVPVQ AGQTPPLLQY FGTLLTRGKL NSYESLELSR LVVNQNKKNL LENWLAEDKL ECSEELGDLV KTVDNDLALK IYIKARATPK
0501: VVAAFAERRE FDKILIYSKQ VGYTPDYMFL LQTILRTDPQ GAVNFALMMS QMEGGCPVDY NTITDLFLQR NLIREATAFL LDVLKPNLPE HAFLQTKVLE
0601: INLVTFPNVA DAILANGMFS HYDRPRVAQL CEKAGLYIQS LKHYSELPDI KRVIVNTHAI EPQALVEFFG TLSSEWAMEC MKDLLLVNLR GNLQIIVQAC
0701: KEYCEQLGVD ACIKLFEQFK SYEGLYFFLG SYLSMSEDPE IHFKYIEAAA KTGQIKEVER VTRESNFYDA EKTKNFLMEA KLPDARPLIN VCDRFGFVPD
0801: LTHYLYTNNM LRYIEGYVQK VNPGNAPLVV GQLLDDECPE DFIKGLILSV RSLLPVEPLV AECEKRNRLR LLTQFLEHLV SEGSQDVHVH NALGKIIIDS
0901: NNNPEHFLTT NPYYDSKVVG KYCEKRDPTL AVVAYRRGQC DEELINVTNK NSLFKLQARY VVERMDGDLW EKVLTEENEY RRQLIDQVVS TALPESKSPE
1001: QVSAAVKAFM TADLPHELIE LLEKIVLQNS AFSGNFNLQN LLILTAIKAD PSRVMDYINR LDNFDGPAVG EVAVDAQLYE EAFAIFKKFN LNVQAVNVLL
1101: DNVRSIERAV EFAFRVEEDA VWSQVAKAQL REGLVSDAIE SFIRADDTTQ FLEVIRASED TNVYDDLVRY LLMVRQKVKE PKVDSELIYA YAKIERLGEI
1201: EEFILMPNVA NLQHVGDRLY DEALYEAAKI IYAFISNWAK LAVTLVKLQQ FQGAVDAARK ANSAKTWKEV CFACVDAEEF RLAQICGLNI IIQVDDLEEV
1301: SEYYQNRGCF NELISLMESG LGLERAHMGI FTELGVLYAR YRYEKLMEHI KLFSTRLNIP KLIRACDEQQ HWQELTYLYI QYDEFDNAAT TVMNHSPEAW
1401: EHMQFKDIVA KVANVELYYK AVHFYLQEHP DIINDLLNVL ALRLDHTRVV DIMRKAGHLR LIKPYMVAVQ SNNVSAVNEA LNEIYAEEED YDRLRESIDL
1501: HDSFDQIGLA QKIEKHELVE MRRVAAYIYK KAGRWKQSIA LSKKDNMYKD CMETASQSGD HDLAEQLLVY FIEQGKKECF ATCLFVCYDL IRPDVALELA
1601: WINNMIDFAF PYLLQFIREY SGKVDELIKD KLEAQKEVKA KEQEEKDVMS QQNMYAQLLP LALPAPPMPG MGGGGYGPPP QMGGMPGMSG MPPMPPYGMP
1701: PMGGY
0101: AKAKLKSHQM PEQVAFWKWI TPKMLGLVTQ TSVYHWSIEG DSEPVKMFDR TANLANNQII NYKCSPNEKW LVLIGIAPGS PERPQLVKGN MQLFSVDQQR
0201: SQALEAHAAS FAQFKVPGNE NPSILISFAS KSFNAGQITS KLHVIELGAQ PGKPSFTKKQ ADLFFPPDFA DDFPVAMQVS HKFNLIYVIT KLGLLFVYDL
0301: ETASAIYRNR ISPDPIFLTS EASSVGGFYA INRRGQVLLA TVNEATIIPF ISGQLNNLEL AVNLAKRGNL PGAENLVVQR FQELFAQTKY KEAAELAAES
0401: PQGILRTPDT VAKFQSVPVQ AGQTPPLLQY FGTLLTRGKL NSYESLELSR LVVNQNKKNL LENWLAEDKL ECSEELGDLV KTVDNDLALK IYIKARATPK
0501: VVAAFAERRE FDKILIYSKQ VGYTPDYMFL LQTILRTDPQ GAVNFALMMS QMEGGCPVDY NTITDLFLQR NLIREATAFL LDVLKPNLPE HAFLQTKVLE
0601: INLVTFPNVA DAILANGMFS HYDRPRVAQL CEKAGLYIQS LKHYSELPDI KRVIVNTHAI EPQALVEFFG TLSSEWAMEC MKDLLLVNLR GNLQIIVQAC
0701: KEYCEQLGVD ACIKLFEQFK SYEGLYFFLG SYLSMSEDPE IHFKYIEAAA KTGQIKEVER VTRESNFYDA EKTKNFLMEA KLPDARPLIN VCDRFGFVPD
0801: LTHYLYTNNM LRYIEGYVQK VNPGNAPLVV GQLLDDECPE DFIKGLILSV RSLLPVEPLV AECEKRNRLR LLTQFLEHLV SEGSQDVHVH NALGKIIIDS
0901: NNNPEHFLTT NPYYDSKVVG KYCEKRDPTL AVVAYRRGQC DEELINVTNK NSLFKLQARY VVERMDGDLW EKVLTEENEY RRQLIDQVVS TALPESKSPE
1001: QVSAAVKAFM TADLPHELIE LLEKIVLQNS AFSGNFNLQN LLILTAIKAD PSRVMDYINR LDNFDGPAVG EVAVDAQLYE EAFAIFKKFN LNVQAVNVLL
1101: DNVRSIERAV EFAFRVEEDA VWSQVAKAQL REGLVSDAIE SFIRADDTTQ FLEVIRASED TNVYDDLVRY LLMVRQKVKE PKVDSELIYA YAKIERLGEI
1201: EEFILMPNVA NLQHVGDRLY DEALYEAAKI IYAFISNWAK LAVTLVKLQQ FQGAVDAARK ANSAKTWKEV CFACVDAEEF RLAQICGLNI IIQVDDLEEV
1301: SEYYQNRGCF NELISLMESG LGLERAHMGI FTELGVLYAR YRYEKLMEHI KLFSTRLNIP KLIRACDEQQ HWQELTYLYI QYDEFDNAAT TVMNHSPEAW
1401: EHMQFKDIVA KVANVELYYK AVHFYLQEHP DIINDLLNVL ALRLDHTRVV DIMRKAGHLR LIKPYMVAVQ SNNVSAVNEA LNEIYAEEED YDRLRESIDL
1501: HDSFDQIGLA QKIEKHELVE MRRVAAYIYK KAGRWKQSIA LSKKDNMYKD CMETASQSGD HDLAEQLLVY FIEQGKKECF ATCLFVCYDL IRPDVALELA
1601: WINNMIDFAF PYLLQFIREY SGKVDELIKD KLEAQKEVKA KEQEEKDVMS QQNMYAQLLP LALPAPPMPG MGGGGYGPPP QMGGMPGMSG MPPMPPYGMP
1701: PMGGY
Arabidopsis Description
CHC1Clathrin heavy chain 1 [Source:UniProtKB/Swiss-Prot;Acc:Q0WNJ6]
SUBAcon: [plasma membrane,cytosol]
SUBAcon: [plasma membrane,cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.