Subcellular Localization
min:
: max
Winner_takes_all: plastid
Predictor Summary:
Predictor Summary:
- cytosol 3
- mitochondrion 2
- plastid 2
- plasma membrane 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| GSMUA_AchrUn_... | Banana | plasma membrane | 76.23 | 95.81 |
| GSMUA_Achr4P16770_001 | Banana | cytosol | 96.14 | 95.52 |
| GSMUA_Achr4P18860_001 | Banana | cytosol | 88.99 | 93.89 |
| GSMUA_AchrUn_... | Banana | cytosol | 4.68 | 93.02 |
| GSMUA_AchrUn_... | Banana | plasma membrane | 92.39 | 92.55 |
| KXG22761 | Sorghum | plastid | 92.33 | 92.22 |
| EES07849 | Sorghum | plastid | 92.27 | 92.22 |
| Zm00001d044614_P086 | Maize | plastid | 92.21 | 91.94 |
| Zm00001d023218_P064 | Maize | plastid | 91.74 | 91.16 |
| TraesCS4A01G182300.1 | Wheat | extracellular, golgi | 91.39 | 91.02 |
| TraesCS4D01G130900.1 | Wheat | golgi, unclear | 91.39 | 91.02 |
| TraesCS5D01G158800.1 | Wheat | plastid | 90.93 | 90.93 |
| TraesCS5B01G152300.1 | Wheat | unclear | 90.93 | 90.93 |
| TraesCS5A01G153500.1 | Wheat | golgi, unclear | 90.93 | 90.93 |
| TraesCS4B01G136100.2 | Wheat | golgi, unclear | 91.39 | 90.13 |
| Os11t0104900-00 | Rice | plasma membrane | 36.83 | 89.99 |
| Zm00001d005090_P106 | Maize | plastid | 91.39 | 89.76 |
| GSMUA_Achr5P14240_001 | Banana | cytosol, plasma membrane, plastid | 91.33 | 89.5 |
| Os11t0104866-00 | Rice | plasma membrane | 30.04 | 88.75 |
| Os12t0104766-00 | Rice | plasma membrane | 30.04 | 88.75 |
| Zm00001d052308_P046 | Maize | cytosol, plastid | 90.11 | 88.4 |
| HORVU4Hr1G024710.4 | Barley | plastid | 91.39 | 87.65 |
| HORVU5Hr1G048010.1 | Barley | plastid | 90.81 | 86.02 |
| Zm00001d043584_P001 | Maize | cytosol | 6.03 | 81.75 |
| Zm00001d009915_P001 | Maize | cytosol | 11.42 | 80.58 |
| Zm00001d012897_P001 | Maize | plastid | 20.67 | 79.68 |
| GSMUA_AchrUn_... | Banana | cytosol | 19.32 | 79.14 |
| Zm00001d015676_P001 | Maize | cytosol | 12.41 | 75.99 |
| Os12t0104800-01 | Rice | cytosol | 5.39 | 75.41 |
| GSMUA_Achr4P18870_001 | Banana | peroxisome, plasma membrane, plastid | 5.09 | 67.97 |
| Zm00001d026086_P002 | Maize | cytosol | 8.49 | 61.18 |
| Zm00001d012509_P003 | Maize | cytosol | 14.23 | 56.64 |
Protein Annotations
| Gene3D:1.25.40.10 | Gene3D:1.25.40.730 | Gene3D:2.130.10.110 | MapMan:22.1.1.1 | InterPro:ARM-type_fold | InterPro:Clathrin_H-chain/VPS_repeat |
| InterPro:Clathrin_H-chain_N | InterPro:Clathrin_H-chain_linker_core | InterPro:Clathrin_H-chain_propeller_rpt | InterPro:Clathrin_heavy_chain | ncoils:Coil | GO:GO:0003674 |
| GO:GO:0005198 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 |
| GO:GO:0005737 | GO:GO:0005794 | GO:GO:0005886 | GO:GO:0005905 | GO:GO:0006810 | GO:GO:0006886 |
| GO:GO:0008150 | GO:GO:0009987 | GO:GO:0016020 | GO:GO:0016043 | GO:GO:0016192 | GO:GO:0030130 |
| GO:GO:0030132 | GO:GO:0030659 | GO:GO:0031410 | GO:GO:0032051 | GO:GO:0048268 | GO:GO:0071439 |
| EnsemblPlantsGene:GSMUA_Achr5G08520_001 | EnsemblPlants:GSMUA_Achr5P08520_001 | EnsemblPlants:GSMUA_Achr5T08520_001 | InterPro:IPR000547 | InterPro:IPR011990 | InterPro:IPR016025 |
| UniProt:M0SWT1 | PFAM:PF00637 | PFAM:PF01394 | PFAM:PF09268 | PFAM:PF13838 | PIRSF:PIRSF002290 |
| PFscan:PS50236 | PANTHER:PTHR10292 | PANTHER:PTHR10292:SF1 | SMART:SM00299 | SUPFAM:SSF48371 | SUPFAM:SSF50989 |
| InterPro:TPR-like_helical_dom_sf | UniParc:UPI0002954C0A | SEG:seg | : | : | : |
Description
Clathrin heavy chain 1 [Source:GMGC_GENE;Acc:GSMUA_Achr5G08520_001]
Coordinates
chr5:+:6209201..6224028
Molecular Weight (calculated)
193553.0 Da
IEP (calculated)
5.058
GRAVY (calculated)
-0.142
Length
1708 amino acids
Sequence
(BLAST)
(BLAST)
0001: MAAANAPIVM REALTLPSIG INPQFITFTH VTMESDKYIC VRETSPENSV VIVDMNMPMQ PLRRPITADS ALMNPNSRIL ALKAKIPGTT QDHLQVFNIE
0101: AKSKIKSHQM PEQVVFWKWI TPKMLGLVTQ TSVYHWSIEG EAEPLKMFDR AANLTNNQII NYKCDPTEKW LVLIGIAPGA SERPQLVKGN MQLFSVDQQR
0201: SQALEAHAAS FASFKVVGNE NSSTLICFAS KSSNAGQITS KLHVIELGAQ PVKPLPGKPG FTKKQADLFF PPDFADDFPV AMQISQKYSL VYVITKLGLL
0301: FVYDLETTAA VYRNRISPDP IFLTTEASNI GGFYAINRRG QVLLATVNEA TIVPFISGQL NNLELAVSIA KRGNLPGAEN LVVQRFQELF SQTKYKEAAE
0401: LAAESPQGIL RTPETVAKFQ SVPVQAGQTP PLLQYFGTLL TRGKLNAFES LELSRLVVNQ NKKNLLENWL AEDKLECSEE LGDLVKTVDN DLALKIYIKA
0501: RATPKVVAAF AERREFDKIL IYSKQVGYTP DYLFLLQTIL RSDPQGAVNF ALMMSQMEGG CPVDYNTITD LFLQRNLIRE ATAFLLDVLK PNLPEHAFLQ
0601: TKVLEINLVT YPNVADAILA NGMFSHYDRP RIAQLCEKAG LYVRALQHYS ELPDIKRVIV NTHAIEPQAL VEFFGTLSTE WALECMKDLL MVNLRGNLQI
0701: IVQTAKEYSE QLGVDACIKL FEQFKSYEGL YFFLGSYLSS SEDPDIHFKY IEAAAKTGQL KEVERVTRES NFYDPEKTKN FLMEAKLPDA RPLINVCDRF
0801: GFVPDLTHYL YTNNMLRYIE GYVQKVNPGN APLVVGQLLD DECPEDFIKG LILSVRSLLP VEPLVDECEK RNRLRLLTQF LEHLVSEGSQ DVHVHNALGK
0901: IIIDSNNNPE HFLTTNPYYD SRVVGKYCEK RDPTLAVVAY RRGQCDDELI NVTNKNSLFK LQARYVVERM DADLWETVLQ PENEYRRQLI DQVVSTALPE
1001: SKSPEQVSAA VKAFMSADLP HELIELLEKI VLQNSAFSGN FNLQNLLILT AIKADPPRVM DYINRLDNFD GPAVGEVAVE AQLYEEAFAI FKKFNLNVQA
1101: VNVLLDNIQS IERAVEFAFR VEEDAVWSQV AKAQLREGLV SDAIESFIRA DDETQFLNVI RAAEDANVYH DLVKYLLMVR QKVKEPKVDG ELIFAYAKID
1201: RLGEIEEFIL MPNVANLQNV GDRLFDDALY EAAKIIFAFI SNWAKLACTL VKLKQFQGAV DAARKANSSK TWKEVCFACV DAEEFRLAQI CGLNIIIQVD
1301: DLEEVSDYYQ NRGCFNELIS LMESGLGLER AHMGIFTELG VLYARYRSEK LMEHIKLFST RLNIPKLIRV CDEQQHWKEL TYLYIQYDEF DNAATTIMNH
1401: SPDAWDHMQF KDVVVKVANV ELYYKAVHFY LQEHPDLIND VLHVLALRVD HTRVVDIMRK AGYLHLVKPY MVAVQSNNVA AVNEALNEIY VEEEDYDRLR
1501: ESVDLHDNFD QIGLAQRIEK HELLEMRRIA AYIYKKAGRW KQSIALSKKD NLYKDAMETC SQSGDRELSE ELLVYFIEQG KKECFASCLF ICYDLIRPDV
1601: ALELAWMNNI IDFAFPYLLQ FIREYTSKVD ELVKDRIEAQ NEVKTKEKEE KDLVSQQNMY AQLLPLALPA PPGMGAPNMG GPYAVPPPMP GMGMPPMAPF
1701: GMPPMGSY
0101: AKSKIKSHQM PEQVVFWKWI TPKMLGLVTQ TSVYHWSIEG EAEPLKMFDR AANLTNNQII NYKCDPTEKW LVLIGIAPGA SERPQLVKGN MQLFSVDQQR
0201: SQALEAHAAS FASFKVVGNE NSSTLICFAS KSSNAGQITS KLHVIELGAQ PVKPLPGKPG FTKKQADLFF PPDFADDFPV AMQISQKYSL VYVITKLGLL
0301: FVYDLETTAA VYRNRISPDP IFLTTEASNI GGFYAINRRG QVLLATVNEA TIVPFISGQL NNLELAVSIA KRGNLPGAEN LVVQRFQELF SQTKYKEAAE
0401: LAAESPQGIL RTPETVAKFQ SVPVQAGQTP PLLQYFGTLL TRGKLNAFES LELSRLVVNQ NKKNLLENWL AEDKLECSEE LGDLVKTVDN DLALKIYIKA
0501: RATPKVVAAF AERREFDKIL IYSKQVGYTP DYLFLLQTIL RSDPQGAVNF ALMMSQMEGG CPVDYNTITD LFLQRNLIRE ATAFLLDVLK PNLPEHAFLQ
0601: TKVLEINLVT YPNVADAILA NGMFSHYDRP RIAQLCEKAG LYVRALQHYS ELPDIKRVIV NTHAIEPQAL VEFFGTLSTE WALECMKDLL MVNLRGNLQI
0701: IVQTAKEYSE QLGVDACIKL FEQFKSYEGL YFFLGSYLSS SEDPDIHFKY IEAAAKTGQL KEVERVTRES NFYDPEKTKN FLMEAKLPDA RPLINVCDRF
0801: GFVPDLTHYL YTNNMLRYIE GYVQKVNPGN APLVVGQLLD DECPEDFIKG LILSVRSLLP VEPLVDECEK RNRLRLLTQF LEHLVSEGSQ DVHVHNALGK
0901: IIIDSNNNPE HFLTTNPYYD SRVVGKYCEK RDPTLAVVAY RRGQCDDELI NVTNKNSLFK LQARYVVERM DADLWETVLQ PENEYRRQLI DQVVSTALPE
1001: SKSPEQVSAA VKAFMSADLP HELIELLEKI VLQNSAFSGN FNLQNLLILT AIKADPPRVM DYINRLDNFD GPAVGEVAVE AQLYEEAFAI FKKFNLNVQA
1101: VNVLLDNIQS IERAVEFAFR VEEDAVWSQV AKAQLREGLV SDAIESFIRA DDETQFLNVI RAAEDANVYH DLVKYLLMVR QKVKEPKVDG ELIFAYAKID
1201: RLGEIEEFIL MPNVANLQNV GDRLFDDALY EAAKIIFAFI SNWAKLACTL VKLKQFQGAV DAARKANSSK TWKEVCFACV DAEEFRLAQI CGLNIIIQVD
1301: DLEEVSDYYQ NRGCFNELIS LMESGLGLER AHMGIFTELG VLYARYRSEK LMEHIKLFST RLNIPKLIRV CDEQQHWKEL TYLYIQYDEF DNAATTIMNH
1401: SPDAWDHMQF KDVVVKVANV ELYYKAVHFY LQEHPDLIND VLHVLALRVD HTRVVDIMRK AGYLHLVKPY MVAVQSNNVA AVNEALNEIY VEEEDYDRLR
1501: ESVDLHDNFD QIGLAQRIEK HELLEMRRIA AYIYKKAGRW KQSIALSKKD NLYKDAMETC SQSGDRELSE ELLVYFIEQG KKECFASCLF ICYDLIRPDV
1601: ALELAWMNNI IDFAFPYLLQ FIREYTSKVD ELVKDRIEAQ NEVKTKEKEE KDLVSQQNMY AQLLPLALPA PPGMGAPNMG GPYAVPPPMP GMGMPPMAPF
1701: GMPPMGSY
0001: MAAANAPIIM KEVLTLPSVG IGQQFITFTN VTMESDKYIC VRETAPQNSV VIIDMNMPMQ PLRRPITADS ALMNPNSRIL ALKAQVPGTT QDHLQIFNIE
0101: AKAKLKSHQM PEQVAFWKWI TPKMLGLVTQ TSVYHWSIEG DSEPVKMFDR TANLANNQII NYKCSPNEKW LVLIGIAPGS PERPQLVKGN MQLFSVDQQR
0201: SQALEAHAAS FAQFKVPGNE NPSILISFAS KSFNAGQITS KLHVIELGAQ PGKPSFTKKQ ADLFFPPDFA DDFPVAMQVS HKFNLIYVIT KLGLLFVYDL
0301: ETASAIYRNR ISPDPIFLTS EASSVGGFYA INRRGQVLLA TVNEATIIPF ISGQLNNLEL AVNLAKRGNL PGAENLVVQR FQELFAQTKY KEAAELAAES
0401: PQGILRTPDT VAKFQSVPVQ AGQTPPLLQY FGTLLTRGKL NSYESLELSR LVVNQNKKNL LENWLAEDKL ECSEELGDLV KTVDNDLALK IYIKARATPK
0501: VVAAFAERRE FDKILIYSKQ VGYTPDYMFL LQTILRTDPQ GAVNFALMMS QMEGGCPVDY NTITDLFLQR NLIREATAFL LDVLKPNLPE HAFLQTKVLE
0601: INLVTFPNVA DAILANGMFS HYDRPRVAQL CEKAGLYIQS LKHYSELPDI KRVIVNTHAI EPQALVEFFG TLSSEWAMEC MKDLLLVNLR GNLQIIVQAC
0701: KEYCEQLGVD ACIKLFEQFK SYEGLYFFLG SYLSMSEDPE IHFKYIEAAA KTGQIKEVER VTRESNFYDA EKTKNFLMEA KLPDARPLIN VCDRFGFVPD
0801: LTHYLYTNNM LRYIEGYVQK VNPGNAPLVV GQLLDDECPE DFIKGLILSV RSLLPVEPLV AECEKRNRLR LLTQFLEHLV SEGSQDVHVH NALGKIIIDS
0901: NNNPEHFLTT NPYYDSKVVG KYCEKRDPTL AVVAYRRGQC DEELINVTNK NSLFKLQARY VVERMDGDLW EKVLTEENEY RRQLIDQVVS TALPESKSPE
1001: QVSAAVKAFM TADLPHELIE LLEKIVLQNS AFSGNFNLQN LLILTAIKAD PSRVMDYINR LDNFDGPAVG EVAVDAQLYE EAFAIFKKFN LNVQAVNVLL
1101: DNVRSIERAV EFAFRVEEDA VWSQVAKAQL REGLVSDAIE SFIRADDTTQ FLEVIRASED TNVYDDLVRY LLMVRQKVKE PKVDSELIYA YAKIERLGEI
1201: EEFILMPNVA NLQHVGDRLY DEALYEAAKI IYAFISNWAK LAVTLVKLQQ FQGAVDAARK ANSAKTWKEV CFACVDAEEF RLAQICGLNI IIQVDDLEEV
1301: SEYYQNRGCF NELISLMESG LGLERAHMGI FTELGVLYAR YRYEKLMEHI KLFSTRLNIP KLIRACDEQQ HWQELTYLYI QYDEFDNAAT TVMNHSPEAW
1401: EHMQFKDIVA KVANVELYYK AVHFYLQEHP DIINDLLNVL ALRLDHTRVV DIMRKAGHLR LIKPYMVAVQ SNNVSAVNEA LNEIYAEEED YDRLRESIDL
1501: HDSFDQIGLA QKIEKHELVE MRRVAAYIYK KAGRWKQSIA LSKKDNMYKD CMETASQSGD HDLAEQLLVY FIEQGKKECF ATCLFVCYDL IRPDVALELA
1601: WINNMIDFAF PYLLQFIREY SGKVDELIKD KLEAQKEVKA KEQEEKDVMS QQNMYAQLLP LALPAPPMPG MGGGGYGPPP QMGGMPGMSG MPPMPPYGMP
1701: PMGGY
0101: AKAKLKSHQM PEQVAFWKWI TPKMLGLVTQ TSVYHWSIEG DSEPVKMFDR TANLANNQII NYKCSPNEKW LVLIGIAPGS PERPQLVKGN MQLFSVDQQR
0201: SQALEAHAAS FAQFKVPGNE NPSILISFAS KSFNAGQITS KLHVIELGAQ PGKPSFTKKQ ADLFFPPDFA DDFPVAMQVS HKFNLIYVIT KLGLLFVYDL
0301: ETASAIYRNR ISPDPIFLTS EASSVGGFYA INRRGQVLLA TVNEATIIPF ISGQLNNLEL AVNLAKRGNL PGAENLVVQR FQELFAQTKY KEAAELAAES
0401: PQGILRTPDT VAKFQSVPVQ AGQTPPLLQY FGTLLTRGKL NSYESLELSR LVVNQNKKNL LENWLAEDKL ECSEELGDLV KTVDNDLALK IYIKARATPK
0501: VVAAFAERRE FDKILIYSKQ VGYTPDYMFL LQTILRTDPQ GAVNFALMMS QMEGGCPVDY NTITDLFLQR NLIREATAFL LDVLKPNLPE HAFLQTKVLE
0601: INLVTFPNVA DAILANGMFS HYDRPRVAQL CEKAGLYIQS LKHYSELPDI KRVIVNTHAI EPQALVEFFG TLSSEWAMEC MKDLLLVNLR GNLQIIVQAC
0701: KEYCEQLGVD ACIKLFEQFK SYEGLYFFLG SYLSMSEDPE IHFKYIEAAA KTGQIKEVER VTRESNFYDA EKTKNFLMEA KLPDARPLIN VCDRFGFVPD
0801: LTHYLYTNNM LRYIEGYVQK VNPGNAPLVV GQLLDDECPE DFIKGLILSV RSLLPVEPLV AECEKRNRLR LLTQFLEHLV SEGSQDVHVH NALGKIIIDS
0901: NNNPEHFLTT NPYYDSKVVG KYCEKRDPTL AVVAYRRGQC DEELINVTNK NSLFKLQARY VVERMDGDLW EKVLTEENEY RRQLIDQVVS TALPESKSPE
1001: QVSAAVKAFM TADLPHELIE LLEKIVLQNS AFSGNFNLQN LLILTAIKAD PSRVMDYINR LDNFDGPAVG EVAVDAQLYE EAFAIFKKFN LNVQAVNVLL
1101: DNVRSIERAV EFAFRVEEDA VWSQVAKAQL REGLVSDAIE SFIRADDTTQ FLEVIRASED TNVYDDLVRY LLMVRQKVKE PKVDSELIYA YAKIERLGEI
1201: EEFILMPNVA NLQHVGDRLY DEALYEAAKI IYAFISNWAK LAVTLVKLQQ FQGAVDAARK ANSAKTWKEV CFACVDAEEF RLAQICGLNI IIQVDDLEEV
1301: SEYYQNRGCF NELISLMESG LGLERAHMGI FTELGVLYAR YRYEKLMEHI KLFSTRLNIP KLIRACDEQQ HWQELTYLYI QYDEFDNAAT TVMNHSPEAW
1401: EHMQFKDIVA KVANVELYYK AVHFYLQEHP DIINDLLNVL ALRLDHTRVV DIMRKAGHLR LIKPYMVAVQ SNNVSAVNEA LNEIYAEEED YDRLRESIDL
1501: HDSFDQIGLA QKIEKHELVE MRRVAAYIYK KAGRWKQSIA LSKKDNMYKD CMETASQSGD HDLAEQLLVY FIEQGKKECF ATCLFVCYDL IRPDVALELA
1601: WINNMIDFAF PYLLQFIREY SGKVDELIKD KLEAQKEVKA KEQEEKDVMS QQNMYAQLLP LALPAPPMPG MGGGGYGPPP QMGGMPGMSG MPPMPPYGMP
1701: PMGGY
Arabidopsis Description
CHC1Clathrin heavy chain 1 [Source:UniProtKB/Swiss-Prot;Acc:Q0WNJ6]
SUBAcon: [plasma membrane,cytosol]
SUBAcon: [plasma membrane,cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.