Factsheet for GSMUA_Achr4P18870_001

Subcellular Localization

min:

: max

Winner_takes_all: peroxisome, plastid, plasma membrane

Predictor Summary:

plastid 2
cytosol 1
mitochondrion 1
peroxisome 1
plasma membrane 3
extracellular 1
endoplasmic reticulum 1
vacuole 1
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	peroxisome, plasma membrane, plastid
Any Predictor:	cytosol, mitochondrion, peroxisome, plastid, secretory
BaCelLo:	plastid
EpiLoc:	cytosol
iPSORT:	mitochondrion
MultiLoc:	peroxisome
Plant-mPloc:	plasma membrane
PProwler:	secretory
WoLF PSORT:	plastid
YLoc:	plasma membrane

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_AchrUn_...	Banana	cytosol	57.81	86.05
KRH12961	Soybean	cytosol	58.59	78.12
KRH25762	Soybean	cytosol	57.03	76.04
GSMUA_AchrUn_...	Banana	cytosol	64.84	19.9
GSMUA_Achr5P14240_001	Banana	cytosol, plasma membrane, plastid	70.31	5.16
GSMUA_Achr4P16770_001	Banana	cytosol	68.75	5.12
GSMUA_Achr5P08520_001	Banana	plastid	67.97	5.09
GSMUA_AchrUn_...	Banana	plasma membrane	17.97	1.35
GSMUA_Achr4P18860_001	Banana	cytosol	11.72	0.93
GSMUA_AchrUn_...	Banana	plasma membrane	9.38	0.88

Protein Annotations

Gene3D:2.130.10.110	MapMan:35.1	InterPro:Clathrin_H-chain_N	InterPro:Clathrin_H-chain_propeller_rpt	GO:GO:0003674	GO:GO:0005198
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005794	GO:GO:0005886
GO:GO:0006810	GO:GO:0006886	GO:GO:0008150	GO:GO:0016020	GO:GO:0016021	GO:GO:0016192
GO:GO:0030130	GO:GO:0030132	EnsemblPlantsGene:GSMUA_Achr4G18870_001	EnsemblPlants:GSMUA_Achr4P18870_001	EnsemblPlants:GSMUA_Achr4T18870_001	InterPro:IPR016025
UniProt:M0SQ50	PFAM:PF01394	PANTHER:PTHR10292	PANTHER:PTHR10292:SF1	SUPFAM:SSF50989	TMHMM:TMhelix
UniParc:UPI000296AC51	SEG:seg	:	:	:	:

Description

Hypothetical protein [Source:GMGC_GENE;Acc:GSMUA_Achr4G18870_001]

Coordinates

chr4:-:19918126..19918816

Molecular Weight (calculated)

14606.2 Da

IEP (calculated)

8.752

GRAVY (calculated)

0.602

Length

128 amino acids

Sequence
(BLAST)

001: MTSANAPIAM REALTLPSLG INPQFITFTH VTMESDKYIC VRETSPQNSL VIVDMSMPMQ PLRRPITADS ALMNPNARIL ALKGFFSFTF LFMILQFLVV
101: VSFLSLFLFY RFYSHIFSFP LLQCVSHL

Best Arabidopsis Sequence Match ( AT1G43320.1 )
(BLAST)

001: MVVSSIVDHL MVNSNLDHLM MNPILHSETF GDEPNCRTFD GELHRGAVDD EPHCRPFDSQ SEQLMMNPTA DHLMVNSNLH YLMMNPISKH LVICSIVEHL
101: VMNSIVAHLK EYPFCSTW

Arabidopsis Description

unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; Has 6 Blast hits to 4 proteins in 2 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 6; Viruses - /.../her Eukaryotes - 0 (source: NCBI BLink). [Source:TAIR;Acc:AT1G43320]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.