Factsheet for GSMUA_Achr5P14240_001

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane, plastid, cytosol

Predictor Summary:

nucleus 1
cytosol 2
mitochondrion 2
plastid 1
plasma membrane 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr4P18860_001	Banana	cytosol	86.23	92.84
GSMUA_Achr5P08520_001	Banana	plastid	89.5	91.33
GSMUA_AchrUn_...	Banana	plasma membrane	71.2	91.32
GSMUA_Achr4P16770_001	Banana	cytosol	89.9	91.16
EES07849	Sorghum	plastid	87.78	89.53
KXG22761	Sorghum	plastid	87.72	89.42
Zm00001d044614_P086	Maize	plastid	87.49	89.03
TraesCS4A01G182300.1	Wheat	extracellular, golgi	87.21	88.63
TraesCS4D01G130900.1	Wheat	golgi, unclear	87.21	88.63
TraesCS5D01G158800.1	Wheat	plastid	86.75	88.52
TraesCS5B01G152300.1	Wheat	unclear	86.75	88.52
TraesCS5A01G153500.1	Wheat	golgi, unclear	86.75	88.52
Zm00001d023218_P064	Maize	plastid	87.26	88.48
GSMUA_AchrUn_...	Banana	plasma membrane	86.4	88.33
Os11t0104866-00	Rice	plasma membrane	29.15	87.89
Os12t0104766-00	Rice	plasma membrane	29.15	87.89
Zm00001d052308_P046	Maize	cytosol, plastid	87.66	87.77
TraesCS4B01G136100.2	Wheat	golgi, unclear	87.09	87.64
Zm00001d005090_P106	Maize	plastid	87.44	87.64
HORVU4Hr1G024710.4	Barley	plastid	87.21	85.35
Os11t0104900-00	Rice	plasma membrane	34.02	84.84
GSMUA_AchrUn_...	Banana	cytosol	4.13	83.72
HORVU5Hr1G048010.1	Barley	plastid	86.57	83.69
Zm00001d043584_P001	Maize	cytosol	6.02	83.33
Zm00001d012897_P001	Maize	plastid	19.91	78.33
GSMUA_AchrUn_...	Banana	cytosol	17.84	74.58
GSMUA_Achr4P18870_001	Banana	peroxisome, plasma membrane, plastid	5.16	70.31
Zm00001d009915_P001	Maize	cytosol	9.58	69.01
Zm00001d015676_P001	Maize	cytosol	10.5	65.59
Zm00001d012509_P003	Maize	cytosol	12.28	49.88
Zm00001d026086_P002	Maize	cytosol	6.66	48.95
Os12t0104800-01	Rice	cytosol	3.38	48.36

Protein Annotations

Gene3D:1.25.40.10	Gene3D:1.25.40.730	Gene3D:2.130.10.110	MapMan:22.1.1.1	InterPro:ARM-type_fold	InterPro:Clathrin_H-chain/VPS_repeat
InterPro:Clathrin_H-chain_N	InterPro:Clathrin_H-chain_linker_core	InterPro:Clathrin_H-chain_propeller_rpt	InterPro:Clathrin_heavy_chain	ncoils:Coil	GO:GO:0003674
GO:GO:0005198	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0005794	GO:GO:0005886	GO:GO:0005905	GO:GO:0006810	GO:GO:0006886
GO:GO:0008150	GO:GO:0009987	GO:GO:0016020	GO:GO:0016021	GO:GO:0016043	GO:GO:0016192
GO:GO:0030130	GO:GO:0030132	GO:GO:0030659	GO:GO:0031410	GO:GO:0032051	GO:GO:0048268
GO:GO:0071439	EnsemblPlantsGene:GSMUA_Achr5G14240_001	EnsemblPlants:GSMUA_Achr5P14240_001	EnsemblPlants:GSMUA_Achr5T14240_001	InterPro:IPR000547	InterPro:IPR011990
InterPro:IPR016025	UniProt:M0SYF3	PFAM:PF00637	PFAM:PF01394	PFAM:PF09268	PFAM:PF13838
PIRSF:PIRSF002290	PFscan:PS50236	PANTHER:PTHR10292	PANTHER:PTHR10292:SF1	SMART:SM00299	SUPFAM:SSF48371
SUPFAM:SSF50989	TMHMM:TMhelix	InterPro:TPR-like_helical_dom_sf	UniParc:UPI0002955CAF	SEG:seg	:

Description

Clathrin heavy chain 1 [Source:GMGC_GENE;Acc:GSMUA_Achr5G14240_001]

Coordinates

chr5:+:10215987..10230405

Molecular Weight (calculated)

199071.0 Da

IEP (calculated)

5.372

GRAVY (calculated)

-0.113

Length

1743 amino acids

Sequence
(BLAST)

0001: MASANAPIAM REVLTLPSLG INPQFVTFTH VTMESDKYIC VRETAPQNSL VIIDMSMPMQ PLRRPITADS ALMNPNAKIL ALKAQLQGST QDHLQIFNID
0101: QKTKIKSHQM PEQHLQVVFW KWINPKMLGI VTQTSVYHWS IEGEGEPVKM FDRAANLTNN QIINYRCDPS EKWLVLIGIA PGAPERPQLV KGHMQLFSVE
0201: QQRSQALEAH AASFASFKAA GKENPSTLVC FASKTTNAGQ IASKLHVIEL GAQPGKPGFT KKQADLFFPP DFADDFPVAM QISQKYSLIY VITKLGLLFV
0301: YDLETATAVY RNRISPDPIF LTSEASTVGG FYAINRRGQV LLATVNEATI VPFVSGQLNN LELAVSLAKR GNLPGAENLV VQRFHELFSQ TKYKEAAELA
0401: AESPKGILRT PETVAKFQSV PVQSGQTPPL LQYFGTLLTR GKLNAFESLE LSRLVVNQNK KNLLENWLAE DKLECSEELG DLVKTVDNDL ALKIYIKARC
0501: TPKVVAAFAE RREFDKILIY SKQVGYTPDY LFLLQTILRS DPQGAVNFAL MMSQMEGGCP VDYNTITDLF LQRNMIREAT AFLLDVLKPN LPEHAFLQTK
0601: VLEINLVTYP NVADAILANG MFSHYDRPRI AQLCEKAGLY IRALQHYTEL PDIKRVIVNT HAIEPQALVE FFGTLSSEWA LECMKDLLLV NLRGNLQIIV
0701: QTAKEYSEQL GVDACIQLFE QFKSYEGLYF FLGSYLSSSE DPDIHFKYIE AAAKTGQIKE VERVTRESNF YDPEKTKNFL MEAKLPDARP LINVCDRFGF
0801: VPDLTHFLYT NNMLRYIEGY VQKVNPGNAP MVVGQLLDDE CPEDFIKGLI LSVRSLLPVE PLVAECEKRN RLRLLTQFLE HLVSEGSQDV HVHNALGMII
0901: IDSNNNPEHF LTTNPYYDSR VVGKYCEKRD PTLAVVAYRR GQCDDELINV TNKNSLFKLQ ARYVVERMDA DLWEKVLVPE NDYRRQLIDQ VVSTALPESK
1001: SPEQVSAAVK AFMTADLPHE LIELLEKIVL QNSAFSGNFN LQNLLILTAI KADPSRVMDY VNRLDNFDGP AVGEVAVEAQ LYEEAFAIFK KFNLNVQAVN
1101: VLLDNIQSIE RAVEFAFRVE EDDVWSQVAK AQLREGLVSD AVESFIRADD ATQFLDVIRA AEDANIYHDL VKYLLMVRQK IKEPKVDSEL IYAYAKIDRL
1201: GEIEEFILMP NVANLQNVGD RLFDDALYEA AKIIFTFISN WAKLASTLVK LRQFQGAVDA ARKANSSKTW KEVCFACVDA EEFRLAQICG LNIIIQVDDL
1301: EEVSDYYQNR GCFNELISLM ESGLGLERVH MGIFTELGVL YARYRPDKLM EHIKLFSTQL NIPKLIRVCD EQQHWKELTY LYIQYDEFDN AATTIMNHSP
1401: DAWDHMQFKD VVVKVANVEL YYKAVHFYLQ EHPDLINDLL HVLALRVDHT RVVDIMRKAG HLHLVKPYMV AVQSNNVAAV NEALNKIYVE EEDYDRLRES
1501: VDMHDNFDQI GLAQRIEKHE LLEMRRIAAY IYKKAGRWKQ SIALSKKDNL YKDAMETCSQ SGDRELSEEL LVYFIEQGKK ECFASCLFIC YDLIRPDVAV
1601: ELAWTNNMLD FAFPYLLQFI REYTSKVDEL IKDKIEAQNE VKVKENEEKD LVAQQACWTH SFLTILFFLF FQVSFCCLTM TLISFCRICM LSCYPWRCQL
1701: HQCLVWEVQA WVDLFHLRHP WLVWGCPRCR HLECLLWQRT EMI

Best Arabidopsis Sequence Match ( AT3G11130.1 )
(BLAST)

0001: MAAANAPIIM KEVLTLPSVG IGQQFITFTN VTMESDKYIC VRETAPQNSV VIIDMNMPMQ PLRRPITADS ALMNPNSRIL ALKAQVPGTT QDHLQIFNIE
0101: AKAKLKSHQM PEQVAFWKWI TPKMLGLVTQ TSVYHWSIEG DSEPVKMFDR TANLANNQII NYKCSPNEKW LVLIGIAPGS PERPQLVKGN MQLFSVDQQR
0201: SQALEAHAAS FAQFKVPGNE NPSILISFAS KSFNAGQITS KLHVIELGAQ PGKPSFTKKQ ADLFFPPDFA DDFPVAMQVS HKFNLIYVIT KLGLLFVYDL
0301: ETASAIYRNR ISPDPIFLTS EASSVGGFYA INRRGQVLLA TVNEATIIPF ISGQLNNLEL AVNLAKRGNL PGAENLVVQR FQELFAQTKY KEAAELAAES
0401: PQGILRTPDT VAKFQSVPVQ AGQTPPLLQY FGTLLTRGKL NSYESLELSR LVVNQNKKNL LENWLAEDKL ECSEELGDLV KTVDNDLALK IYIKARATPK
0501: VVAAFAERRE FDKILIYSKQ VGYTPDYMFL LQTILRTDPQ GAVNFALMMS QMEGGCPVDY NTITDLFLQR NLIREATAFL LDVLKPNLPE HAFLQTKVLE
0601: INLVTFPNVA DAILANGMFS HYDRPRVAQL CEKAGLYIQS LKHYSELPDI KRVIVNTHAI EPQALVEFFG TLSSEWAMEC MKDLLLVNLR GNLQIIVQAC
0701: KEYCEQLGVD ACIKLFEQFK SYEGLYFFLG SYLSMSEDPE IHFKYIEAAA KTGQIKEVER VTRESNFYDA EKTKNFLMEA KLPDARPLIN VCDRFGFVPD
0801: LTHYLYTNNM LRYIEGYVQK VNPGNAPLVV GQLLDDECPE DFIKGLILSV RSLLPVEPLV AECEKRNRLR LLTQFLEHLV SEGSQDVHVH NALGKIIIDS
0901: NNNPEHFLTT NPYYDSKVVG KYCEKRDPTL AVVAYRRGQC DEELINVTNK NSLFKLQARY VVERMDGDLW EKVLTEENEY RRQLIDQVVS TALPESKSPE
1001: QVSAAVKAFM TADLPHELIE LLEKIVLQNS AFSGNFNLQN LLILTAIKAD PSRVMDYINR LDNFDGPAVG EVAVDAQLYE EAFAIFKKFN LNVQAVNVLL
1101: DNVRSIERAV EFAFRVEEDA VWSQVAKAQL REGLVSDAIE SFIRADDTTQ FLEVIRASED TNVYDDLVRY LLMVRQKVKE PKVDSELIYA YAKIERLGEI
1201: EEFILMPNVA NLQHVGDRLY DEALYEAAKI IYAFISNWAK LAVTLVKLQQ FQGAVDAARK ANSAKTWKEV CFACVDAEEF RLAQICGLNI IIQVDDLEEV
1301: SEYYQNRGCF NELISLMESG LGLERAHMGI FTELGVLYAR YRYEKLMEHI KLFSTRLNIP KLIRACDEQQ HWQELTYLYI QYDEFDNAAT TVMNHSPEAW
1401: EHMQFKDIVA KVANVELYYK AVHFYLQEHP DIINDLLNVL ALRLDHTRVV DIMRKAGHLR LIKPYMVAVQ SNNVSAVNEA LNEIYAEEED YDRLRESIDL
1501: HDSFDQIGLA QKIEKHELVE MRRVAAYIYK KAGRWKQSIA LSKKDNMYKD CMETASQSGD HDLAEQLLVY FIEQGKKECF ATCLFVCYDL IRPDVALELA
1601: WINNMIDFAF PYLLQFIREY SGKVDELIKD KLEAQKEVKA KEQEEKDVMS QQNMYAQLLP LALPAPPMPG MGGGGYGPPP QMGGMPGMSG MPPMPPYGMP
1701: PMGGY

Arabidopsis Description

CHC1Clathrin heavy chain 1 [Source:UniProtKB/Swiss-Prot;Acc:Q0WNJ6]
SUBAcon: [plasma membrane,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.