Factsheet for Os12t0104766-00

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane

Predictor Summary:

nucleus 1
cytosol 4
mitochondrion 2
plastid 2

Predictors

GFP

MS/MS

Papers

plasma membrane: 18557835

msms PMID: 18557835 doi

SA Whiteman, TS Nühse, DA Ashford, D Sanders, FJ Maathuis

Department of Biology Area 9, University of York, York YO10 5DD, UK.

PPI

Inferred distinct locusB in Crop

locusB	locations
Os01t0328500-01
Os02t0478500-01
Os02t0629000-01
Os02t0793100-01
Os03t0151900-01
Os03t0234600-00
Os03t0701100-01
Os03t0806700-01
Os03t0849600-01
Os04t0520700-01
Os04t0644600-01
Os04t0679100-01
Os05t0358500-01
Os06t0731800-01
Os07t0571900-01
Os07t0572300-01
Os08t0196700-01
Os08t0553800-03
Os08t0560900-01
Os09t0261400-01
Os10t0441800-01
Os10t0481000-00
Os11t0104866-00
Os11t0104900-00
Os11t0175900-01
Os12t0104766-00
Os12t0104800-01
Os12t0613000-01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G08530.1	Os03t0701100-01	AT1G03140.1	21798944
AT3G08530.1	Os07t0571900-01	AT1G03140.1	21798944
AT3G08530.1	Os04t0644600-01	AT1G52510.1	21798944
AT3G08530.1	Os03t0234600-00	AT2G32840.1	21798944
AT3G08530.1	Os08t0196700-01	AT2G34720.1	21798944
AT3G08530.1	Os12t0613000-01	AT2G34720.1	21798944
AT3G08530.1	Os02t0793100-01	AT3G01780.1	21187379
AT3G08530.1	Os11t0175900-01	AT3G01780.1	21187379
AT3G08530.1	Os03t0806700-01	AT3G04860.1	21798944
AT3G08530.1	Os07t0572300-01	AT3G04860.1	21798944
AT3G08530.1	Os05t0358500-01	AT3G05640.1	21798944
AT3G08530.1	Os02t0478500-01	AT3G07440.1	21798944
AT3G08530.1	Os11t0104866-00	AT3G08530.1	21187379
AT3G08530.1	Os11t0104900-00	AT3G08530.1	21187379
AT3G08530.1	Os12t0104766-00	AT3G08530.1	21187379
AT3G08530.1	Os12t0104800-01	AT3G08530.1	21187379
AT3G08530.1	Os11t0104866-00	AT3G08530.1	21798944
AT3G08530.1	Os11t0104900-00	AT3G08530.1	21798944
AT3G08530.1	Os12t0104766-00	AT3G08530.1	21798944
AT3G08530.1	Os12t0104800-01	AT3G08530.1	21798944
AT3G08530.1	Os09t0261400-01	AT3G13222.1	21798944
AT3G08530.1	Os02t0629000-01	AT3G45210.1	21798944
AT3G08530.1	Os04t0520700-01	AT3G45210.1	21798944
AT3G08530.1	Os10t0481000-00	AT3G45210.1	21798944
AT3G08530.1	Os03t0151900-01	AT3G54840.1	21798944
AT3G08530.1	Os10t0441800-01	AT3G54840.1	21798944
AT3G08530.1	Os08t0560900-01	AT4G02770.1	21798944
AT3G08530.1	Os03t0849600-01	AT4G24840.1	21798944
AT3G08530.1	Os08t0553800-03	AT4G35250.1	21798944
AT3G08530.1	Os01t0328500-01	AT5G30490.1	21798944
AT3G11130.1	Os04t0679100-01	AT2G20760.1	24529374
AT3G11130.1	Os06t0731800-01	AT2G20760.1	24529374
AT3G11130.1	Os11t0104866-00	AT3G08530.1	24529374
AT3G11130.1	Os11t0104900-00	AT3G08530.1	24529374
AT3G11130.1	Os12t0104766-00	AT3G08530.1	24529374
AT3G11130.1	Os12t0104800-01	AT3G08530.1	24529374

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Os11t0104866-00	Rice	plasma membrane	96.54	96.54
KRH12961	Soybean	cytosol	12.46	75.0
KRH25762	Soybean	cytosol	12.11	72.92
CDY36318	Canola	cytosol	87.2	68.48
VIT_03s0017g00210.t01	Wine grape	cytosol, extracellular	5.36	58.49
VIT_16s0115g00130.t01	Wine grape	cytosol	11.25	56.03
VIT_19s0027g01340.t01	Wine grape	cytosol	24.39	45.93
Bra034166.1-P	Field mustard	cytosol	87.72	35.01
Bra001391.1-P	Field mustard	cytosol	86.85	34.57
Bra034864.1-P	Field mustard	cytosol	88.06	34.21
Bra001286.1-P	Field mustard	cytosol	86.16	33.56
CDY08549	Canola	cytosol	88.06	32.95
EES07849	Sorghum	plastid	95.16	32.18
KXG22761	Sorghum	plastid	95.16	32.16
TraesCS5B01G152300.1	Wheat	unclear	93.43	31.62
TraesCS4D01G130900.1	Wheat	golgi, unclear	93.77	31.6
TraesCS4A01G182300.1	Wheat	extracellular, golgi	93.77	31.6
TraesCS5D01G158800.1	Wheat	plastid	93.25	31.56
TraesCS5A01G153500.1	Wheat	golgi, unclear	93.25	31.56
TraesCS4B01G136100.2	Wheat	golgi, unclear	93.6	31.24
VIT_06s0004g06860.t01	Wine grape	cytosol, plastid	90.14	30.56
HORVU4Hr1G024710.4	Barley	plastid	93.77	30.43
CDY36301	Canola	cytosol	87.72	30.18
CDY00724	Canola	cytosol	87.72	30.18
CDX73889	Canola	cytosol	87.54	30.07
KRG97711	Soybean	endoplasmic reticulum, nucleus	88.41	30.06
GSMUA_Achr5P08520_001	Banana	plastid	88.75	30.04
GSMUA_Achr4P16770_001	Banana	cytosol	89.1	29.96
Solyc05g052510.2.1	Tomato	nucleus, plastid	88.41	29.95
Solyc06g051310.2.1	Tomato	nucleus	88.06	29.92
HORVU5Hr1G048010.1	Barley	plastid	93.25	29.89
KRH31163	Soybean	endoplasmic reticulum	87.72	29.82
AT3G11130.1	Thale cress	cytosol, plasma membrane	87.89	29.79
CDX74011	Canola	cytosol	86.33	29.74
CDY07954	Canola	cytosol	86.16	29.73
AT3G08530.1	Thale cress	cytosol, plasma membrane, plastid	87.54	29.71
CDY00997	Canola	extracellular	87.72	29.7
Bra029698.1-P	Field mustard	cytosol	75.95	29.68
KRH14933	Soybean	nucleus	86.85	29.53
VIT_13s0067g01290.t01	Wine grape	extracellular	86.85	29.46
KRH73205	Soybean	nucleus	86.85	29.41
CDY27997	Canola	cytosol	81.14	29.31
Solyc03g096000.2.1	Tomato	nucleus	85.99	29.2
GSMUA_Achr5P14240_001	Banana	cytosol, plasma membrane, plastid	87.89	29.15
KRH28591	Soybean	endoplasmic reticulum	85.64	29.08
KRH76885	Soybean	endoplasmic reticulum	85.47	29.02
CDY35984	Canola	cytosol	80.45	28.95
KRH17059	Soybean	endoplasmic reticulum, nucleus	84.78	28.77
CDY06504	Canola	extracellular, mitochondrion	4.67	28.72
KRH72708	Soybean	endoplasmic reticulum, mitochondrion	84.78	28.72
GSMUA_Achr4P18860_001	Banana	cytosol	75.95	27.12
GSMUA_AchrUn_...	Banana	plasma membrane	77.51	26.28
CDY22157	Canola	cytosol	3.46	25.64
GSMUA_AchrUn_...	Banana	plasma membrane	32.18	13.69
CDY36317	Canola	cytosol	1.38	3.16
CDY22158	Canola	cytosol	0.52	1.58
Os11t0104900-00	Rice	plasma membrane	0.69	0.57
Os12t0104800-01	Rice	cytosol	0.0	0.0
Zm00001d043584_P001	Maize	cytosol	0.0	0.0

Protein Annotations

Gene3D:2.130.10.110	MapMan:35.1	UniProt:A0A0P0Y653	InterPro:ARM-type_fold	ProteinID:BAT15480.1	InterPro:Clathrin_H-chain/VPS_repeat
InterPro:Clathrin_H-chain_N	InterPro:Clathrin_H-chain_linker_core	InterPro:Clathrin_H-chain_propeller_rpt	GO:GO:0003674	GO:GO:0005198	GO:GO:0005488
GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005794
GO:GO:0005886	GO:GO:0005905	GO:GO:0006810	GO:GO:0006886	GO:GO:0008150	GO:GO:0009987
GO:GO:0016020	GO:GO:0016043	GO:GO:0016192	GO:GO:0030130	GO:GO:0030132	GO:GO:0030659
GO:GO:0031410	GO:GO:0032051	GO:GO:0048268	GO:GO:0071439	InterPro:IPR000547	InterPro:IPR016025
EnsemblPlantsGene:Os12g0104766	EnsemblPlants:Os12t0104766-00	PFAM:PF01394	PFAM:PF09268	PFAM:PF13838	PFscan:PS50236
PANTHER:PTHR10292	PANTHER:PTHR10292:SF1	SUPFAM:SSF48371	SUPFAM:SSF50989	UniParc:UPI000393AE80	SEG:seg

Description

Similar to Clathrin heavy chain. (Os12t0104766-00)

Coordinates

chr12:+:249725..254663

Molecular Weight (calculated)

64055.4 Da

IEP (calculated)

6.605

GRAVY (calculated)

-0.058

Length

578 amino acids

Sequence
(BLAST)

001: MAAANAPIAM REALTLTSLG IAPQFVTFTH VTMESEKYIC VRETSPQNSV VIVDMAMPAQ PLRRPITADS ALMNPNTRIL ALKAQIPGTT QDHLQIFNIE
101: AKTKIKSHQM PEQVVFWKWI TPKLLGLVTQ TSVYHWSIEG DSEPAKMFDR TANLANNQII NYRCDPSEKW LVLIGIAPGA PERPQLVKGN MQLFSVDQQR
201: SQALEAHAAS FASFKVVGNE NPSTLICFAS KTTNAGQITS KLHVIELGAQ PGKPGFSKKQ ADLFFPPDFQ DDFPVAMQIS QKYGLIYVIT KLGLLFVYDL
301: ETAAAVYRNR ISPDPIFLTA ESSASGGFYA INRRGQVLHA TVNDATIVPF VSSQLNNLEL AVNLAKRANL PGAENLVVQR FQELFAQTKY KEAAELAAES
401: PQGLLRTPDT VAKFQSVPVQ AGQTPPLLQY FGTLLTRGKL NAYESLELSR LVVNQNKKNL LENWLAEDKL ECSEELGDLV KVGYTPDYLF LLQTILRTDP
501: QGAVNFALMM SQMEGGCPVD YNTITDLFLQ RNMIREATAF LLDVLKPNLP EHAFLQTKFL FELIVGFGDQ LGHLPKCC

Best Arabidopsis Sequence Match ( AT3G11130.1 )
(BLAST)

0001: MAAANAPIIM KEVLTLPSVG IGQQFITFTN VTMESDKYIC VRETAPQNSV VIIDMNMPMQ PLRRPITADS ALMNPNSRIL ALKAQVPGTT QDHLQIFNIE
0101: AKAKLKSHQM PEQVAFWKWI TPKMLGLVTQ TSVYHWSIEG DSEPVKMFDR TANLANNQII NYKCSPNEKW LVLIGIAPGS PERPQLVKGN MQLFSVDQQR
0201: SQALEAHAAS FAQFKVPGNE NPSILISFAS KSFNAGQITS KLHVIELGAQ PGKPSFTKKQ ADLFFPPDFA DDFPVAMQVS HKFNLIYVIT KLGLLFVYDL
0301: ETASAIYRNR ISPDPIFLTS EASSVGGFYA INRRGQVLLA TVNEATIIPF ISGQLNNLEL AVNLAKRGNL PGAENLVVQR FQELFAQTKY KEAAELAAES
0401: PQGILRTPDT VAKFQSVPVQ AGQTPPLLQY FGTLLTRGKL NSYESLELSR LVVNQNKKNL LENWLAEDKL ECSEELGDLV KTVDNDLALK IYIKARATPK
0501: VVAAFAERRE FDKILIYSKQ VGYTPDYMFL LQTILRTDPQ GAVNFALMMS QMEGGCPVDY NTITDLFLQR NLIREATAFL LDVLKPNLPE HAFLQTKVLE
0601: INLVTFPNVA DAILANGMFS HYDRPRVAQL CEKAGLYIQS LKHYSELPDI KRVIVNTHAI EPQALVEFFG TLSSEWAMEC MKDLLLVNLR GNLQIIVQAC
0701: KEYCEQLGVD ACIKLFEQFK SYEGLYFFLG SYLSMSEDPE IHFKYIEAAA KTGQIKEVER VTRESNFYDA EKTKNFLMEA KLPDARPLIN VCDRFGFVPD
0801: LTHYLYTNNM LRYIEGYVQK VNPGNAPLVV GQLLDDECPE DFIKGLILSV RSLLPVEPLV AECEKRNRLR LLTQFLEHLV SEGSQDVHVH NALGKIIIDS
0901: NNNPEHFLTT NPYYDSKVVG KYCEKRDPTL AVVAYRRGQC DEELINVTNK NSLFKLQARY VVERMDGDLW EKVLTEENEY RRQLIDQVVS TALPESKSPE
1001: QVSAAVKAFM TADLPHELIE LLEKIVLQNS AFSGNFNLQN LLILTAIKAD PSRVMDYINR LDNFDGPAVG EVAVDAQLYE EAFAIFKKFN LNVQAVNVLL
1101: DNVRSIERAV EFAFRVEEDA VWSQVAKAQL REGLVSDAIE SFIRADDTTQ FLEVIRASED TNVYDDLVRY LLMVRQKVKE PKVDSELIYA YAKIERLGEI
1201: EEFILMPNVA NLQHVGDRLY DEALYEAAKI IYAFISNWAK LAVTLVKLQQ FQGAVDAARK ANSAKTWKEV CFACVDAEEF RLAQICGLNI IIQVDDLEEV
1301: SEYYQNRGCF NELISLMESG LGLERAHMGI FTELGVLYAR YRYEKLMEHI KLFSTRLNIP KLIRACDEQQ HWQELTYLYI QYDEFDNAAT TVMNHSPEAW
1401: EHMQFKDIVA KVANVELYYK AVHFYLQEHP DIINDLLNVL ALRLDHTRVV DIMRKAGHLR LIKPYMVAVQ SNNVSAVNEA LNEIYAEEED YDRLRESIDL
1501: HDSFDQIGLA QKIEKHELVE MRRVAAYIYK KAGRWKQSIA LSKKDNMYKD CMETASQSGD HDLAEQLLVY FIEQGKKECF ATCLFVCYDL IRPDVALELA
1601: WINNMIDFAF PYLLQFIREY SGKVDELIKD KLEAQKEVKA KEQEEKDVMS QQNMYAQLLP LALPAPPMPG MGGGGYGPPP QMGGMPGMSG MPPMPPYGMP
1701: PMGGY

Arabidopsis Description

CHC1Clathrin heavy chain 1 [Source:UniProtKB/Swiss-Prot;Acc:Q0WNJ6]
SUBAcon: [plasma membrane,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.