CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum

Predictor Summary:

cytosol 3
mitochondrion 2
plastid 3
plasma membrane 1

Predictors

GFP

MS/MS

Papers

endoplasmic reticulum: 27224218

msms PMID: 27224218 doi

X Wang, S Komatsu

Graduate School of Life and Environmental Sciences, University of Tsukuba , Tsukuba 305-8572, Japan., National Institute of Crop Science, National Agriculture and Food Research Organization , Tsukuba 305-8518, Japan.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH28591	Soybean	endoplasmic reticulum	98.12	98.12
KRH17059	Soybean	endoplasmic reticulum, nucleus	94.65	94.6
KRH72708	Soybean	endoplasmic reticulum, mitochondrion	94.42	94.2
KRG97711	Soybean	endoplasmic reticulum, nucleus	92.07	92.18
KRH31163	Soybean	endoplasmic reticulum	92.01	92.12
KRH14933	Soybean	nucleus	91.07	91.18
KRH73205	Soybean	nucleus	91.25	90.98
KXG22761	Sorghum	plastid	90.42	90.0
EES07849	Sorghum	plastid	90.31	89.94
TraesCS5D01G158800.1	Wheat	plastid	89.25	88.93
TraesCS5A01G153500.1	Wheat	golgi, unclear	89.19	88.88
TraesCS5B01G152300.1	Wheat	unclear	89.13	88.82
TraesCS4A01G182300.1	Wheat	extracellular, golgi	89.37	88.69
TraesCS4D01G130900.1	Wheat	golgi, unclear	89.37	88.69
TraesCS4B01G136100.2	Wheat	golgi, unclear	89.25	87.7
Os11t0104900-00	Rice	plasma membrane	35.84	87.27
Os12t0104766-00	Rice	plasma membrane	29.02	85.47
HORVU4Hr1G024710.4	Barley	plastid	89.19	85.23
Os11t0104866-00	Rice	plasma membrane	28.91	85.12
HORVU5Hr1G048010.1	Barley	plastid	88.95	83.97
KRH12961	Soybean	cytosol	4.47	79.17
KRH25762	Soybean	cytosol	4.29	76.04
Os12t0104800-01	Rice	cytosol	4.99	69.67

Protein Annotations

Gene3D:1.25.40.10	Gene3D:1.25.40.730	EntrezGene:100784651	Gene3D:2.130.10.110	MapMan:22.1.1.1	EMBL:ACUP02000645
InterPro:ARM-type_fold	InterPro:Clathrin_H-chain/VPS_repeat	InterPro:Clathrin_H-chain_N	InterPro:Clathrin_H-chain_linker_core	InterPro:Clathrin_H-chain_propeller_rpt	InterPro:Clathrin_heavy_chain
ncoils:Coil	EnsemblPlantsGene:GLYMA_01G179300	GO:GO:0003674	GO:GO:0005198	GO:GO:0005488	GO:GO:0005515
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005794	GO:GO:0005886
GO:GO:0005905	GO:GO:0006810	GO:GO:0006886	GO:GO:0008150	GO:GO:0009987	GO:GO:0016020
GO:GO:0016043	GO:GO:0016192	GO:GO:0030130	GO:GO:0030132	GO:GO:0030659	GO:GO:0031410
GO:GO:0032051	GO:GO:0048268	GO:GO:0071439	UniProt:I1J8Z9	InterPro:IPR000547	InterPro:IPR011990
InterPro:IPR016025	EnsemblPlants:KRH76885	ProteinID:KRH76885	ProteinID:KRH76885.1	PFAM:PF00637	PFAM:PF01394
PFAM:PF09268	PFAM:PF13838	PIRSF:PIRSF002290	PFscan:PS50236	PANTHER:PTHR10292	PANTHER:PTHR10292:SF1
SMART:SM00299	SUPFAM:SSF48371	SUPFAM:SSF50989	InterPro:TPR-like_helical_dom_sf	UniParc:UPI00023376BC	SEG:seg

Description

hypothetical protein

Coordinates

chr1:+:51519044..51530150

Molecular Weight (calculated)

192755.0 Da

IEP (calculated)

5.038

GRAVY (calculated)

-0.157

Length

1702 amino acids

Sequence
(BLAST)

0001: MAANAPIIMR EALTLASVGI NPQFITFTHV TMESDKYICV RETAPQNSVV MIDMTMPMQP LRRPITADSA LMNPNTRILA LKAHVPGSTQ DHLQVFNIES
0101: KAKMKSYQMG QQVVFWKWIT PKTLGIVTQS SVYHWSIEGD GEPVKVFDRT ANLANNQIIN YRCDPTEKWL VLIGIAPGSS DRPQLVKGNM QLFSVDQQRS
0201: QALEAHAASF ATFRVAGNDK DSTLICFASK SINAGQVTSK MHAIELGAQP GKPSFSKKQA DLFFPPDFAD DFPVSMQISN KYGLIYVITK LGLLFVYDLE
0301: TATAVYRNRI SPDPIFLTTE ASSEGGFYAI NRRGQVLLAT VNEATIVPFV SGQLNNLELA VSLAKRGNLP GAEELVVKRF QELFAQTKYK EAAELAAQSP
0401: QGVLRTPDTV AKFQSVPVQA GQTPPLLQYF GTLLTMGKLN AFESLELSRL VVNQNKKNLL ENWLAEDKLE CSEELGDLVK TVDNDLALKI YIKARATPKV
0501: VAAFAERREF DKILIYSKQV GYTPDYMFLL QTILRTDPQG AVNFALMMSQ MEGGCPIDYN TITDLFLQRN LIREATAFLL DVLKPNLPEH GYLQTKVLEI
0601: NLVTFPNVAD AILANGMFSH YDRPRIGQLC EKAGLFIRAL QHYTELPDIK RVIVNTHAIE PQGLVEFFGT LSREWALECM KDLLLVNLRG NLQIIVQTAK
0701: EYSEQLGVDA CIKLFEQFKS YEGLYFFLGA YLSSSEDPDI HFKYIEAAAK TGQIKEVERV TRESNFYDAE KTKNFLMEAK LPDARPLINV CDRFGFVPDL
0801: THYLYTSNML RYIEGYVQKV NPGNAPLVVG QLLDDECPED FIKGLILSVR SLLPVEPLVE ECEKRNRLRL LTQFLEHLVS EGSQDVHVHN ALGKIIIDSN
0901: NNPEHFLTTN PYYDSRVVGK YCEKRDPTLA VVAYRRGQCD DELVNVTNKN SLFKLQARYV VERMDSDLWE KVLNPENEFR RLLIDQVVST ALPESKSPDQ
1001: VSAAVKAFMT ADLPHELIEL LEKIVLQNSA FSGNFNLQNL LILTAVKADP SRVMDYINRL DNFDGPAVGE VAVEAQLYEE AFSIFKKFNL NVQAVNVLLD
1101: NLQTIDRAVE FAFRVEEDAV WSQVAKAQLR EGLVSDAIES FIRADDSTHF LEVIKAAEDA DVYHDLVKYL LMVRQNTKEP KVDSELIYAY AKIEHLGEIE
1201: EFILMPNVAN LPNVGDRLYD EALYEAAKII FAFISNWAKL AVTLVKLKQF QGAVDAARKA NSSKTWKEVC FACVDAEEFR LAQICGLNVI IQVDDLEEVS
1301: EYYQNRGCFN ELISLMESGL GLERAHMGIF TELGVLYARY RPEKLMEHIK LFSTRLNIPK LIRACDEQQH WKELTYLYIQ YDEFDNAATT VMNHSPEAWD
1401: HMQFKDVIVK VASVELYYKA VHFYFKEHPD VINDMLNVIA LRVDHTRVVD IMRKAGHLRL VKPYMVAVQS NNVSAVNEAL NEIYVEEEDY DRLRESIDLH
1501: DNFDQIGLAQ KIEKHELLEM RRVAAYIYKK AGRWKQSIAL SKKDNLYKDC METCSQSGDR ELSEDLLIYF IEQGKKECFA SCLFVCYDII RPDVALELSW
1601: MNNMIDFAFP YLLQFIREYT GKVDELIKDK IEAQNEEKAK EKEEKEVLAQ QNMYAQLLPL ALPAPPMQGM GGGYAPSPPL PMGGMGMPPM PPFGMPPMDG
1701: GY

Best Arabidopsis Sequence Match ( AT3G08530.1 )
(BLAST)

0001: MAAANAPITM KEVLTLPSIG INQQFITFTN VTMESDKYIC VRETSPQNSV VIIDMNMPMQ PLRRPITADS ALMNPNSKIL ALKAQVPGTT QDHLQIFNIE
0101: AKAKLKSHQM PEQVVFWKWI TPKMLGLVTQ NSVYHWSIEG DSEPVKMFDR TANLANNQII NYKCSPNEKW LVLIGIAPGS PERQQLVKGN MQLFSVDQQR
0201: SQALEAHAAS FAQFKVPGNE NPSILISFAS KSFNAGQITS KLHVIELGAQ PGKPSFTKKQ ADLFFPPDFA DDFPVAMQVS HKFNLIYVIT KLGLLFVYDL
0301: ETASAIYRNR ISPDPIFLTS EASSVGGFYA INRRGQVLLA TVNEATIIPF ISGQLNNLEL AVNLAKRGNL PGAENLVVQR FQELFAQTKY KEAAELAAES
0401: PQGILRTPDT VAKFQSVPVQ AGQTPPLLQY FGTLLTRGKL NSYESLELSR LVVNQNKKNL LENWLAEDKL ECSEELGDLV KTVDNDLALK IYIKARATPK
0501: VVAAFAERRE FDKILIYSKQ VGYTPDYLFL LQTILRTDPQ GAVNFALMMS QMEGGSPVDY NTITDLFLQR NLIREATSFL LDVLKPNLPE HAFLQTKVLE
0601: INLVTFPNVA DAVLANGMFT HYDRPRIAQL CEKAGLYIQS LKHYSELPDI KRVIVNTHAI EPQALVEFFG TLSSEWAMEC MKDLLLVNLR GNLQIIVQAC
0701: KEYCEQLGVD ACIKLFEQFK SYEGLYFFLG SYLSMSEDPE IHFKYIEAAA KTGQIKEVER VTRESNFYDA EKTKNFLMEA KLPDARPLIN VCDRFSFVPD
0801: LTHYLYTNNM LRYIEGYVQK VNPGNAPLVV GQLLDDECPE DFIKGLILSV RSLLPVEPLV EECEKRNRLR LLTQFLEHLV SEGSQDVHVH NALGKIIIDS
0901: NNNPEHFLTT NPYYDSKVVG KYCEKRDPTL AVVAYRRGQC DEELINVTNK NSLFKLQARY VVERMDGDLW DKVLDENNDY RRQLIDQVVS TALPESKSPE
1001: QVSAAVKAFM TADLPHELIE LLEKIVLQNS AFSGNFNLQN LLILTAIKAD PSRVMDYINR LDNFDGPAVG EVAVEAQLYE EAFAIFKKFN LNVQAVNVLL
1101: DNVRSIERAV EFAFRVEEDS VWSQVAKAQL REGLVSDAIE SFIRADDATH FLEVIRVSED TDVYDDLVKY LLMVRQKVKE PKVDSELIYA YAKIDRLGEI
1201: EEFILMPNVA NLQHVGDRLY DEALYEAAKI IYAFISNWGK LAVTLVKLQQ FQGAVDAARK ANSAKTWKEV CFACVDAEEF RLAQICGLNI IIQVDDLEEV
1301: SEYYQNRGCF NELISLMESG LGLERAHMGI FTELGVLYAR YRYEKLMEHI KLFSTRLNIP KLIRACDEQQ HWQELTYLYI QYDEFDNAAT TVMNHSPEAW
1401: EHMQFKDIVA KVANVELYYK AVHFYLQEHP DIINDLLNVL ALRLDHTRVV DIMRKAGHLR LIKPYMIAVQ SNNVSAVNEA LNEIYVEEED YDRLRESIDL
1501: HDSFDQIGLA QKIEKHELVE MRRVAAYIYK KAGRWKQSIA LSKKDNMYKD CMETASQSGE HELAEQLLVY FIEQGKKECF ATCLFVCYDL IRPDVALELA
1601: WINNMMDFAF PYLLQFIREY SGKVDELIKD KLEAQKEVKA KEQEEKDVIS QQNMYAQMLP LALPAPPMPG MGGGGGYGPP PQMGGMPGMP PMPPYGMPPM
1701: GGY

Arabidopsis Description

CHC2Clathrin heavy chain 2 [Source:UniProtKB/Swiss-Prot;Acc:Q0WLB5]
SUBAcon: [plasma membrane,plastid,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.