Subcellular Localization
min:
: max
Winner_takes_all: extracellular
Predictor Summary:
Predictor Summary:
- cytosol 3
- mitochondrion 2
- plastid 2
- plasma membrane 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
| extracellular:
27664331
|
msms PMID:
27664331
doi
Departament de Biologia Vegetal, Facultat de Farmàcia, Universitat de València, Burjassot, Valencia, Spain., Grupo de Ciencias de la Alimentación Basada en la Evidencia y Experimentación (CiAlBEx), Instituto de Ciencias de los Materiales, Parque Científico, Universitat de València, Paterna, Spain; Unidad Mixta de Investigación en Endocrinología, Nutrición y Dietética Clínica, Instituto de Investigación Sanitaria La Fe-Universitat de València, Valencia, Spain., Unidad Mixta de Investigación en Endocrinología, Nutrición y Dietética Clínica, Instituto de Investigación Sanitaria La Fe-Universitat de València, Valencia, Spain; Àrea de Parasitologia, Departament de Farmàcia i Tecnologia Farmacèutica i Parasitologia, Universitat de València, Burjassot, Valencia, Spain. Electronic address: antonio.marcilla@uv.es.
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| VIT_06s0004g06860.t01 | Wine grape | cytosol, plastid | 95.07 | 95.01 |
| KXG22761 | Sorghum | plastid | 91.73 | 91.4 |
| EES07849 | Sorghum | plastid | 91.67 | 91.4 |
| TraesCS5D01G158800.1 | Wheat | plastid | 90.67 | 90.46 |
| TraesCS5B01G152300.1 | Wheat | unclear | 90.61 | 90.4 |
| TraesCS5A01G153500.1 | Wheat | golgi, unclear | 90.61 | 90.4 |
| TraesCS4A01G182300.1 | Wheat | extracellular, golgi | 90.9 | 90.32 |
| TraesCS4D01G130900.1 | Wheat | golgi, unclear | 90.9 | 90.32 |
| Os11t0104900-00 | Rice | plasma membrane | 36.97 | 90.13 |
| TraesCS4B01G136100.2 | Wheat | golgi, unclear | 90.79 | 89.32 |
| Os12t0104766-00 | Rice | plasma membrane | 29.46 | 86.85 |
| HORVU4Hr1G024710.4 | Barley | plastid | 90.73 | 86.81 |
| Os11t0104866-00 | Rice | plasma membrane | 29.28 | 86.33 |
| HORVU5Hr1G048010.1 | Barley | plastid | 90.43 | 85.47 |
| VIT_16s0115g00130.t01 | Wine grape | cytosol | 4.99 | 73.28 |
| Os12t0104800-01 | Rice | cytosol | 5.16 | 72.13 |
| VIT_03s0017g00210.t01 | Wine grape | cytosol, extracellular | 2.23 | 71.7 |
| VIT_19s0027g01340.t01 | Wine grape | cytosol | 9.57 | 53.09 |
Protein Annotations
| Gene3D:1.25.40.10 | Gene3D:1.25.40.730 | EntrezGene:100256972 | wikigene:100256972 | Gene3D:2.130.10.110 | MapMan:22.1.1.1 |
| UniProt:A5ACP0 | EMBL:AM423296 | InterPro:ARM-type_fold | ProteinID:CAN79917 | ProteinID:CAN79917.1 | ProteinID:CBI25457 |
| ProteinID:CBI25457.3 | InterPro:Clathrin_H-chain/VPS_repeat | InterPro:Clathrin_H-chain_N | InterPro:Clathrin_H-chain_linker_core | InterPro:Clathrin_H-chain_propeller_rpt | InterPro:Clathrin_heavy_chain |
| ncoils:Coil | EMBL:FN595514 | GO:GO:0003674 | GO:GO:0005198 | GO:GO:0005488 | GO:GO:0005515 |
| GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 | GO:GO:0005794 | GO:GO:0005886 |
| GO:GO:0005905 | GO:GO:0006810 | GO:GO:0006886 | GO:GO:0008150 | GO:GO:0009987 | GO:GO:0016020 |
| GO:GO:0016043 | GO:GO:0016192 | GO:GO:0030130 | GO:GO:0030132 | GO:GO:0030659 | GO:GO:0031410 |
| GO:GO:0032051 | GO:GO:0048268 | GO:GO:0071439 | InterPro:IPR000547 | InterPro:IPR011990 | InterPro:IPR016025 |
| EntrezGene:LOC100256972 | wikigene:LOC100256972 | PFAM:PF00637 | PFAM:PF01394 | PFAM:PF09268 | PFAM:PF13838 |
| PIRSF:PIRSF002290 | PFscan:PS50236 | PANTHER:PTHR10292 | PANTHER:PTHR10292:SF1 | SMART:SM00299 | SUPFAM:SSF48371 |
| SUPFAM:SSF50989 | TIGR:TC52347 | TIGR:TC64408 | InterPro:TPR-like_helical_dom_sf | UniParc:UPI000152395B | ArrayExpress:VIT_13s0067g01290 |
| EnsemblPlantsGene:VIT_13s0067g01290 | EnsemblPlants:VIT_13s0067g01290.t01 | unigene:Vvi.7581 | RefSeq:XP_002269905 | RefSeq:XP_002269905.1 | SEG:seg |
Description
Clathrin heavy chain [Source:UniProtKB/TrEMBL;Acc:A5ACP0]
Coordinates
chr13:+:733346..751127
Molecular Weight (calculated)
192979.0 Da
IEP (calculated)
5.128
GRAVY (calculated)
-0.135
Length
1704 amino acids
Sequence
(BLAST)
(BLAST)
0001: MAAANAPITM KEVLTLPSLG ISPQFITFTH VTMESDKYLC VRETAPQNSV VIIDMNMPMQ PLRRPITADS ALMNPNTRIL ALKAQLPGTT QDHLQIFNIE
0101: MKAKMKSYQM PEQIVFWKWI TPKMLGLVTQ TSVYHWSIEG DSEPVKMFER TANLVNNQII NYRCDPSEKW LVLIGIAPGS PERPQLVKGN MQLFSVEQHR
0201: SQALEAHAAS FATFKVPGND QPCTLIGFAT KSFNAGQIVS KLHVIELGSN PGKPGFTKKQ ADLFFPPDFA DDFPVAMQIS HKYGLIYVIT KLGLLFVYDL
0301: ESASAVYRNR ISPDPIFLTA EATSIGGFYA INRRGQVLLA TVNEAAIVPF VSGQLNNLEL AVNLAKRGNL PGAENLVVQR FQELFAQTKY KEAAELAAES
0401: PQGILRTPDT VAKFQSVPMQ SGQTPPLLQY FGTLLTRGKL NAFESLELSR LVVNQNKKNL LENWLAEDKL ECSEELGDLV KTVDTDLALK IYIKARATPK
0501: VVAAFAERRE FDKILIYSKQ VGYTPDYLFL LQTILRSDPQ GAVNFALMMS QMEGGCPIDF NTITDLFLQR NLIREATAFL LDVLKPNLPE HGFLQTKVLE
0601: INLVTYPNVA DAILANGMFS HYDRPRIAQL CEKAGLYVRA LQHYTELPDI KRVIVNTHAI EPQALVEFFG TLSREWALEC MKDLLLVNLR GNLQIIVQTA
0701: KEYSEQLGVD QCVKLFEQFK SYEGLYFFLG SYLSSSEDPD IHFKYIEAAA KTGQIKEVER VTRESNFYDA EKTKNFLMEA KLPDARPLIN VCDRFGFVPD
0801: LTHYLYTNNM LRYIEGYVQK VNPSNAPLVV GQLLDDECPE DFIKGLILSV RSLLPVEPLV DECEKRNRLR LLTQFLEHLV SEGSQDVHVH NALGKIIIDS
0901: NNNPEHFLTT NPYYDSRVVG KYCEKRDPTL AVVAYRRGQC DEELINVTNK NSLFKLQARY VVERMDSDLW EKVLDPDNDY RRQLIDQVVS TALPESKSPE
1001: QVSAAVKAFM TADLPHELIE LLEKIVLQNS AFSGNFNLQN LLILTAIKAD PSRVMDYINR LDNFDGPAVG EVAVEAQLFE EAFAIFKKFN LNVQAVNVLL
1101: DNIQSIERAV EFAFRVEEDA VWSQVAKAQL REGLVSDAIE SFIRADDATQ FLDVIRAAED ANVYHDLVRY LLMVRQKAKE PKVDSELIYA YAKIDRLGEI
1201: EEFILMPNVA NLQNVGDRLY DEALYEAAKI IFAFISNWAK LACTLVKLRQ FQGAVDAARK ANSSKTWKEV CFACVDAEEF RLAQICGLNI IIQVDDLEEV
1301: SDYYQNRGCF NELISLMESG LGLERAHMGI FTELGVLYAR YRPEKLMEHI KLFSTRLNIP KLIRACDEQQ HWKELTYLYI QYDEFDNAAT TIMNHSPDAW
1401: DHMQFKDVAV KVANVELYYK AVHFYLQEHP DLINDLLNVL ALRVDHTRVV DIMRKAGHLH LVKPYMVAVQ SNNVSAVNEA LNGIYVEEED YDRLRESIDM
1501: HDNFDQIGLA QKIEKHELLE MRRVAAYIYK KAGRWKQSIA LSKKDNLYKD AMETASQSGD RELAEELLVY FIEKGKKECF ASCLFVCYDL IRPDIALELA
1601: WINNMVDFAL PYLLQFIREY AGKVDELVKD KLEALNEVKA KEKEEKDVIA QQNMYAQLLP LALPAPPMPG MGGAGMAGGF VPPPMGSMGM PPMPPFGMPP
1701: MGTY
0101: MKAKMKSYQM PEQIVFWKWI TPKMLGLVTQ TSVYHWSIEG DSEPVKMFER TANLVNNQII NYRCDPSEKW LVLIGIAPGS PERPQLVKGN MQLFSVEQHR
0201: SQALEAHAAS FATFKVPGND QPCTLIGFAT KSFNAGQIVS KLHVIELGSN PGKPGFTKKQ ADLFFPPDFA DDFPVAMQIS HKYGLIYVIT KLGLLFVYDL
0301: ESASAVYRNR ISPDPIFLTA EATSIGGFYA INRRGQVLLA TVNEAAIVPF VSGQLNNLEL AVNLAKRGNL PGAENLVVQR FQELFAQTKY KEAAELAAES
0401: PQGILRTPDT VAKFQSVPMQ SGQTPPLLQY FGTLLTRGKL NAFESLELSR LVVNQNKKNL LENWLAEDKL ECSEELGDLV KTVDTDLALK IYIKARATPK
0501: VVAAFAERRE FDKILIYSKQ VGYTPDYLFL LQTILRSDPQ GAVNFALMMS QMEGGCPIDF NTITDLFLQR NLIREATAFL LDVLKPNLPE HGFLQTKVLE
0601: INLVTYPNVA DAILANGMFS HYDRPRIAQL CEKAGLYVRA LQHYTELPDI KRVIVNTHAI EPQALVEFFG TLSREWALEC MKDLLLVNLR GNLQIIVQTA
0701: KEYSEQLGVD QCVKLFEQFK SYEGLYFFLG SYLSSSEDPD IHFKYIEAAA KTGQIKEVER VTRESNFYDA EKTKNFLMEA KLPDARPLIN VCDRFGFVPD
0801: LTHYLYTNNM LRYIEGYVQK VNPSNAPLVV GQLLDDECPE DFIKGLILSV RSLLPVEPLV DECEKRNRLR LLTQFLEHLV SEGSQDVHVH NALGKIIIDS
0901: NNNPEHFLTT NPYYDSRVVG KYCEKRDPTL AVVAYRRGQC DEELINVTNK NSLFKLQARY VVERMDSDLW EKVLDPDNDY RRQLIDQVVS TALPESKSPE
1001: QVSAAVKAFM TADLPHELIE LLEKIVLQNS AFSGNFNLQN LLILTAIKAD PSRVMDYINR LDNFDGPAVG EVAVEAQLFE EAFAIFKKFN LNVQAVNVLL
1101: DNIQSIERAV EFAFRVEEDA VWSQVAKAQL REGLVSDAIE SFIRADDATQ FLDVIRAAED ANVYHDLVRY LLMVRQKAKE PKVDSELIYA YAKIDRLGEI
1201: EEFILMPNVA NLQNVGDRLY DEALYEAAKI IFAFISNWAK LACTLVKLRQ FQGAVDAARK ANSSKTWKEV CFACVDAEEF RLAQICGLNI IIQVDDLEEV
1301: SDYYQNRGCF NELISLMESG LGLERAHMGI FTELGVLYAR YRPEKLMEHI KLFSTRLNIP KLIRACDEQQ HWKELTYLYI QYDEFDNAAT TIMNHSPDAW
1401: DHMQFKDVAV KVANVELYYK AVHFYLQEHP DLINDLLNVL ALRVDHTRVV DIMRKAGHLH LVKPYMVAVQ SNNVSAVNEA LNGIYVEEED YDRLRESIDM
1501: HDNFDQIGLA QKIEKHELLE MRRVAAYIYK KAGRWKQSIA LSKKDNLYKD AMETASQSGD RELAEELLVY FIEKGKKECF ASCLFVCYDL IRPDIALELA
1601: WINNMVDFAL PYLLQFIREY AGKVDELVKD KLEALNEVKA KEKEEKDVIA QQNMYAQLLP LALPAPPMPG MGGAGMAGGF VPPPMGSMGM PPMPPFGMPP
1701: MGTY
0001: MAAANAPIIM KEVLTLPSVG IGQQFITFTN VTMESDKYIC VRETAPQNSV VIIDMNMPMQ PLRRPITADS ALMNPNSRIL ALKAQVPGTT QDHLQIFNIE
0101: AKAKLKSHQM PEQVAFWKWI TPKMLGLVTQ TSVYHWSIEG DSEPVKMFDR TANLANNQII NYKCSPNEKW LVLIGIAPGS PERPQLVKGN MQLFSVDQQR
0201: SQALEAHAAS FAQFKVPGNE NPSILISFAS KSFNAGQITS KLHVIELGAQ PGKPSFTKKQ ADLFFPPDFA DDFPVAMQVS HKFNLIYVIT KLGLLFVYDL
0301: ETASAIYRNR ISPDPIFLTS EASSVGGFYA INRRGQVLLA TVNEATIIPF ISGQLNNLEL AVNLAKRGNL PGAENLVVQR FQELFAQTKY KEAAELAAES
0401: PQGILRTPDT VAKFQSVPVQ AGQTPPLLQY FGTLLTRGKL NSYESLELSR LVVNQNKKNL LENWLAEDKL ECSEELGDLV KTVDNDLALK IYIKARATPK
0501: VVAAFAERRE FDKILIYSKQ VGYTPDYMFL LQTILRTDPQ GAVNFALMMS QMEGGCPVDY NTITDLFLQR NLIREATAFL LDVLKPNLPE HAFLQTKVLE
0601: INLVTFPNVA DAILANGMFS HYDRPRVAQL CEKAGLYIQS LKHYSELPDI KRVIVNTHAI EPQALVEFFG TLSSEWAMEC MKDLLLVNLR GNLQIIVQAC
0701: KEYCEQLGVD ACIKLFEQFK SYEGLYFFLG SYLSMSEDPE IHFKYIEAAA KTGQIKEVER VTRESNFYDA EKTKNFLMEA KLPDARPLIN VCDRFGFVPD
0801: LTHYLYTNNM LRYIEGYVQK VNPGNAPLVV GQLLDDECPE DFIKGLILSV RSLLPVEPLV AECEKRNRLR LLTQFLEHLV SEGSQDVHVH NALGKIIIDS
0901: NNNPEHFLTT NPYYDSKVVG KYCEKRDPTL AVVAYRRGQC DEELINVTNK NSLFKLQARY VVERMDGDLW EKVLTEENEY RRQLIDQVVS TALPESKSPE
1001: QVSAAVKAFM TADLPHELIE LLEKIVLQNS AFSGNFNLQN LLILTAIKAD PSRVMDYINR LDNFDGPAVG EVAVDAQLYE EAFAIFKKFN LNVQAVNVLL
1101: DNVRSIERAV EFAFRVEEDA VWSQVAKAQL REGLVSDAIE SFIRADDTTQ FLEVIRASED TNVYDDLVRY LLMVRQKVKE PKVDSELIYA YAKIERLGEI
1201: EEFILMPNVA NLQHVGDRLY DEALYEAAKI IYAFISNWAK LAVTLVKLQQ FQGAVDAARK ANSAKTWKEV CFACVDAEEF RLAQICGLNI IIQVDDLEEV
1301: SEYYQNRGCF NELISLMESG LGLERAHMGI FTELGVLYAR YRYEKLMEHI KLFSTRLNIP KLIRACDEQQ HWQELTYLYI QYDEFDNAAT TVMNHSPEAW
1401: EHMQFKDIVA KVANVELYYK AVHFYLQEHP DIINDLLNVL ALRLDHTRVV DIMRKAGHLR LIKPYMVAVQ SNNVSAVNEA LNEIYAEEED YDRLRESIDL
1501: HDSFDQIGLA QKIEKHELVE MRRVAAYIYK KAGRWKQSIA LSKKDNMYKD CMETASQSGD HDLAEQLLVY FIEQGKKECF ATCLFVCYDL IRPDVALELA
1601: WINNMIDFAF PYLLQFIREY SGKVDELIKD KLEAQKEVKA KEQEEKDVMS QQNMYAQLLP LALPAPPMPG MGGGGYGPPP QMGGMPGMSG MPPMPPYGMP
1701: PMGGY
0101: AKAKLKSHQM PEQVAFWKWI TPKMLGLVTQ TSVYHWSIEG DSEPVKMFDR TANLANNQII NYKCSPNEKW LVLIGIAPGS PERPQLVKGN MQLFSVDQQR
0201: SQALEAHAAS FAQFKVPGNE NPSILISFAS KSFNAGQITS KLHVIELGAQ PGKPSFTKKQ ADLFFPPDFA DDFPVAMQVS HKFNLIYVIT KLGLLFVYDL
0301: ETASAIYRNR ISPDPIFLTS EASSVGGFYA INRRGQVLLA TVNEATIIPF ISGQLNNLEL AVNLAKRGNL PGAENLVVQR FQELFAQTKY KEAAELAAES
0401: PQGILRTPDT VAKFQSVPVQ AGQTPPLLQY FGTLLTRGKL NSYESLELSR LVVNQNKKNL LENWLAEDKL ECSEELGDLV KTVDNDLALK IYIKARATPK
0501: VVAAFAERRE FDKILIYSKQ VGYTPDYMFL LQTILRTDPQ GAVNFALMMS QMEGGCPVDY NTITDLFLQR NLIREATAFL LDVLKPNLPE HAFLQTKVLE
0601: INLVTFPNVA DAILANGMFS HYDRPRVAQL CEKAGLYIQS LKHYSELPDI KRVIVNTHAI EPQALVEFFG TLSSEWAMEC MKDLLLVNLR GNLQIIVQAC
0701: KEYCEQLGVD ACIKLFEQFK SYEGLYFFLG SYLSMSEDPE IHFKYIEAAA KTGQIKEVER VTRESNFYDA EKTKNFLMEA KLPDARPLIN VCDRFGFVPD
0801: LTHYLYTNNM LRYIEGYVQK VNPGNAPLVV GQLLDDECPE DFIKGLILSV RSLLPVEPLV AECEKRNRLR LLTQFLEHLV SEGSQDVHVH NALGKIIIDS
0901: NNNPEHFLTT NPYYDSKVVG KYCEKRDPTL AVVAYRRGQC DEELINVTNK NSLFKLQARY VVERMDGDLW EKVLTEENEY RRQLIDQVVS TALPESKSPE
1001: QVSAAVKAFM TADLPHELIE LLEKIVLQNS AFSGNFNLQN LLILTAIKAD PSRVMDYINR LDNFDGPAVG EVAVDAQLYE EAFAIFKKFN LNVQAVNVLL
1101: DNVRSIERAV EFAFRVEEDA VWSQVAKAQL REGLVSDAIE SFIRADDTTQ FLEVIRASED TNVYDDLVRY LLMVRQKVKE PKVDSELIYA YAKIERLGEI
1201: EEFILMPNVA NLQHVGDRLY DEALYEAAKI IYAFISNWAK LAVTLVKLQQ FQGAVDAARK ANSAKTWKEV CFACVDAEEF RLAQICGLNI IIQVDDLEEV
1301: SEYYQNRGCF NELISLMESG LGLERAHMGI FTELGVLYAR YRYEKLMEHI KLFSTRLNIP KLIRACDEQQ HWQELTYLYI QYDEFDNAAT TVMNHSPEAW
1401: EHMQFKDIVA KVANVELYYK AVHFYLQEHP DIINDLLNVL ALRLDHTRVV DIMRKAGHLR LIKPYMVAVQ SNNVSAVNEA LNEIYAEEED YDRLRESIDL
1501: HDSFDQIGLA QKIEKHELVE MRRVAAYIYK KAGRWKQSIA LSKKDNMYKD CMETASQSGD HDLAEQLLVY FIEQGKKECF ATCLFVCYDL IRPDVALELA
1601: WINNMIDFAF PYLLQFIREY SGKVDELIKD KLEAQKEVKA KEQEEKDVMS QQNMYAQLLP LALPAPPMPG MGGGGYGPPP QMGGMPGMSG MPPMPPYGMP
1701: PMGGY
Arabidopsis Description
CHC1Clathrin heavy chain 1 [Source:UniProtKB/Swiss-Prot;Acc:Q0WNJ6]
SUBAcon: [plasma membrane,cytosol]
SUBAcon: [plasma membrane,cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.