Skip to main content
crop-pal logo
Wine grape
Subcellular Localization
min:
: max

 
Winner_takes_all: extracellular, cytosol

Predictor Summary:
  • extracellular 3
  • endoplasmic reticulum 2
  • vacuole 2
  • plasma membrane 3
  • golgi 2
  • cytosol 3
  • plastid 1
  • mitochondrion 1
PPI

Inferred from Arabidopsis experimental PPI

Ath locusAlocusBAth locusBPaper
AT3G08530.1 VIT_07s0151g01010.t01 AT1G03140.1 21798944
AT3G08530.1 VIT_09s0002g07500.t01 AT1G52510.1 21798944
AT3G08530.1 VIT_19s0014g00220.t01 AT1G53510.1 21798944
AT3G08530.1 VIT_13s0156g00270.t01 AT2G32840.1 21798944
AT3G08530.1 VIT_10s0003g04650.t01 AT2G34720.1 21798944
AT3G08530.1 VIT_08s0058g00250.t01 AT2G38300.1 21798944
AT3G08530.1 VIT_08s0007g07790.t01 AT2G42260.1 21798944
AT3G08530.1 VIT_14s0171g00280.t01 AT3G01780.1 21187379
AT3G08530.1 VIT_14s0030g01760.t01 AT3G04860.1 21798944
AT3G08530.1 VIT_14s0060g02070.t01 AT3G05640.1 21798944
AT3G08530.1 VIT_00s0337g00070.t01 AT3G07440.1 21798944
AT3G08530.1 VIT_03s0017g00210.t01 AT3G08530.1 21187379
AT3G08530.1 VIT_16s0115g00130.t01 AT3G08530.1 21187379
AT3G08530.1 VIT_19s0027g01340.t01 AT3G08530.1 21187379
AT3G08530.1 VIT_03s0017g00210.t01 AT3G08530.1 21798944
AT3G08530.1 VIT_16s0115g00130.t01 AT3G08530.1 21798944
AT3G08530.1 VIT_19s0027g01340.t01 AT3G08530.1 21798944
AT3G08530.1 VIT_13s0019g04680.t01 AT3G54840.1 21798944
AT3G08530.1 VIT_05s0020g03180.t01 AT4G02770.1 21798944
AT3G08530.1 VIT_07s0151g01000.t01 AT4G02770.1 21798944
AT3G08530.1 VIT_17s0000g01560.t01 AT4G24840.1 21798944
AT3G08530.1 VIT_03s0038g03250.t01 AT4G35250.1 21798944
AT3G08530.1 VIT_13s0067g03220.t01 AT5G05190.1 21798944
AT3G08530.1 VIT_05s0020g00360.t01 AT5G30490.1 21798944
AT3G11130.1 VIT_13s0067g00550.t01 AT2G40060.1 24529374
AT3G11130.1 VIT_03s0017g00210.t01 AT3G08530.1 24529374
AT3G11130.1 VIT_16s0115g00130.t01 AT3G08530.1 24529374
AT3G11130.1 VIT_19s0027g01340.t01 AT3G08530.1 24529374
AT3G11130.1 VIT_08s0007g02140.t01 AT3G51890.1 24529374
AT3G11130.1 VIT_08s0058g01360.t01 AT3G52850.1 16905657
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
Os12t0104766-00 Rice plasma membrane 58.49 5.36
Os11t0104866-00 Rice plasma membrane 58.49 5.36
CDY36318 Canola cytosol 66.04 4.76
Bra034166.1-P Field mustard cytosol 66.04 2.42
Bra001391.1-P Field mustard cytosol 66.04 2.41
Bra001286.1-P Field mustard cytosol 66.04 2.36
Bra034864.1-P Field mustard cytosol 66.04 2.35
VIT_13s0067g01290.t01 Wine grape extracellular 71.7 2.23
Bra029698.1-P Field mustard cytosol 58.49 2.1
KRH14933 Soybean nucleus 66.04 2.06
AT3G08530.1 Thale cress cytosol, plasma membrane, plastid 66.04 2.06
KRH73205 Soybean nucleus 66.04 2.05
KRG97711 Soybean endoplasmic reticulum, nucleus 64.15 2.0
KRH31163 Soybean endoplasmic reticulum 62.26 1.94
Solyc06g051310.2.1 Tomato nucleus 62.26 1.94
AT3G11130.1 Thale cress cytosol, plasma membrane 62.26 1.94
Solyc05g052510.2.1 Tomato nucleus, plastid 62.26 1.93
VIT_06s0004g06860.t01 Wine grape cytosol, plastid 60.38 1.88
TraesCS5D01G158800.1 Wheat plastid 60.38 1.87
TraesCS5B01G152300.1 Wheat unclear 60.38 1.87
TraesCS5A01G153500.1 Wheat golgi, unclear 60.38 1.87
EES07849 Sorghum plastid 58.49 1.81
KXG22761 Sorghum plastid 58.49 1.81
TraesCS4A01G182300.1 Wheat extracellular, golgi 58.49 1.81
TraesCS4D01G130900.1 Wheat golgi, unclear 58.49 1.81
TraesCS4B01G136100.2 Wheat golgi, unclear 58.49 1.79
HORVU5Hr1G048010.1 Barley plastid 60.38 1.77
HORVU4Hr1G024710.4 Barley plastid 58.49 1.74
Solyc03g096000.2.1 Tomato nucleus 54.72 1.7
CDY36317 Canola cytosol 1.89 0.4
Zm00001d021067_P001 Maize cytosol, mitochondrion 1.89 0.23
Os12t0104800-01 Rice cytosol 0.0 0.0
Os11t0104900-00 Rice plasma membrane 0.0 0.0
VIT_16s0115g00130.t01 Wine grape cytosol 0.0 0.0
VIT_19s0027g01340.t01 Wine grape cytosol 0.0 0.0
Protein Annotations
Gene3D:2.130.10.110MapMan:35.2ProteinID:CCB57971ProteinID:CCB57971.1InterPro:Clathrin_H-chain_NUniProt:F6HTG1
EMBL:FN596248GO:GO:0003674GO:GO:0005198GO:GO:0005575GO:GO:0005622GO:GO:0005623
GO:GO:0005737GO:GO:0005794GO:GO:0005886GO:GO:0006810GO:GO:0006886GO:GO:0008150
GO:GO:0016020GO:GO:0016192GO:GO:0030130GO:GO:0030132InterPro:IPR016025SUPFAM:SSF50989
UniParc:UPI00021088A4ArrayExpress:VIT_03s0017g00210EnsemblPlantsGene:VIT_03s0017g00210EnsemblPlants:VIT_03s0017g00210.t01::
Description
No Description!
Coordinates
chr3:+:14402801..14403093
Molecular Weight (calculated)
5812.1 Da
IEP (calculated)
4.657
GRAVY (calculated)
0.130
Length
53 amino acids
Sequence
(BLAST)
1: MAAANALITM KEVPMLPSLG INPQFITLTH VTMESDKYLC VWGDGSTEQC CNH
Best Arabidopsis Sequence Match ( AT3G08530.1 )
(BLAST)
0001: MAAANAPITM KEVLTLPSIG INQQFITFTN VTMESDKYIC VRETSPQNSV VIIDMNMPMQ PLRRPITADS ALMNPNSKIL ALKAQVPGTT QDHLQIFNIE
0101: AKAKLKSHQM PEQVVFWKWI TPKMLGLVTQ NSVYHWSIEG DSEPVKMFDR TANLANNQII NYKCSPNEKW LVLIGIAPGS PERQQLVKGN MQLFSVDQQR
0201: SQALEAHAAS FAQFKVPGNE NPSILISFAS KSFNAGQITS KLHVIELGAQ PGKPSFTKKQ ADLFFPPDFA DDFPVAMQVS HKFNLIYVIT KLGLLFVYDL
0301: ETASAIYRNR ISPDPIFLTS EASSVGGFYA INRRGQVLLA TVNEATIIPF ISGQLNNLEL AVNLAKRGNL PGAENLVVQR FQELFAQTKY KEAAELAAES
0401: PQGILRTPDT VAKFQSVPVQ AGQTPPLLQY FGTLLTRGKL NSYESLELSR LVVNQNKKNL LENWLAEDKL ECSEELGDLV KTVDNDLALK IYIKARATPK
0501: VVAAFAERRE FDKILIYSKQ VGYTPDYLFL LQTILRTDPQ GAVNFALMMS QMEGGSPVDY NTITDLFLQR NLIREATSFL LDVLKPNLPE HAFLQTKVLE
0601: INLVTFPNVA DAVLANGMFT HYDRPRIAQL CEKAGLYIQS LKHYSELPDI KRVIVNTHAI EPQALVEFFG TLSSEWAMEC MKDLLLVNLR GNLQIIVQAC
0701: KEYCEQLGVD ACIKLFEQFK SYEGLYFFLG SYLSMSEDPE IHFKYIEAAA KTGQIKEVER VTRESNFYDA EKTKNFLMEA KLPDARPLIN VCDRFSFVPD
0801: LTHYLYTNNM LRYIEGYVQK VNPGNAPLVV GQLLDDECPE DFIKGLILSV RSLLPVEPLV EECEKRNRLR LLTQFLEHLV SEGSQDVHVH NALGKIIIDS
0901: NNNPEHFLTT NPYYDSKVVG KYCEKRDPTL AVVAYRRGQC DEELINVTNK NSLFKLQARY VVERMDGDLW DKVLDENNDY RRQLIDQVVS TALPESKSPE
1001: QVSAAVKAFM TADLPHELIE LLEKIVLQNS AFSGNFNLQN LLILTAIKAD PSRVMDYINR LDNFDGPAVG EVAVEAQLYE EAFAIFKKFN LNVQAVNVLL
1101: DNVRSIERAV EFAFRVEEDS VWSQVAKAQL REGLVSDAIE SFIRADDATH FLEVIRVSED TDVYDDLVKY LLMVRQKVKE PKVDSELIYA YAKIDRLGEI
1201: EEFILMPNVA NLQHVGDRLY DEALYEAAKI IYAFISNWGK LAVTLVKLQQ FQGAVDAARK ANSAKTWKEV CFACVDAEEF RLAQICGLNI IIQVDDLEEV
1301: SEYYQNRGCF NELISLMESG LGLERAHMGI FTELGVLYAR YRYEKLMEHI KLFSTRLNIP KLIRACDEQQ HWQELTYLYI QYDEFDNAAT TVMNHSPEAW
1401: EHMQFKDIVA KVANVELYYK AVHFYLQEHP DIINDLLNVL ALRLDHTRVV DIMRKAGHLR LIKPYMIAVQ SNNVSAVNEA LNEIYVEEED YDRLRESIDL
1501: HDSFDQIGLA QKIEKHELVE MRRVAAYIYK KAGRWKQSIA LSKKDNMYKD CMETASQSGE HELAEQLLVY FIEQGKKECF ATCLFVCYDL IRPDVALELA
1601: WINNMMDFAF PYLLQFIREY SGKVDELIKD KLEAQKEVKA KEQEEKDVIS QQNMYAQMLP LALPAPPMPG MGGGGGYGPP PQMGGMPGMP PMPPYGMPPM
1701: GGY
Arabidopsis Description
CHC2Clathrin heavy chain 2 [Source:UniProtKB/Swiss-Prot;Acc:Q0WLB5]
SUBAcon: [plasma membrane,plastid,cytosol]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.