Factsheet for VIT_14s0060g02070.t01

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

nucleus 3
mitochondrion 4
plastid 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
VIT_09s0002g01710.t01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G05640.1	VIT_09s0002g01710.t01	AT4G08520.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRG96758	Soybean	cytosol, mitochondrion, peroxisome	78.69	78.05
KRH68473	Soybean	cytosol, mitochondrion, peroxisome	78.96	77.9
PGSC0003DMT400063747	Potato	cytosol, mitochondrion, peroxisome	77.6	77.38
Solyc01g100040.2.1	Tomato	cytosol, mitochondrion, peroxisome	77.32	77.11
KRH33864	Soybean	nucleus	77.05	76.63
KRG92929	Soybean	nucleus	76.23	76.02
GSMUA_Achr11P...	Banana	mitochondrion	69.4	74.27
Bra040530.1-P	Field mustard	cytosol, nucleus, peroxisome	68.85	72.41
CDY18810	Canola	cytosol, nucleus, peroxisome	68.85	72.41
AT3G05640.1	Thale cress	cytosol, mitochondrion, peroxisome	70.49	72.07
GSMUA_Achr8P10330_001	Banana	mitochondrion, nucleus	67.76	70.86
AT5G27930.1	Thale cress	nucleus	71.86	70.51
Bra036606.1-P	Field mustard	nucleus	70.77	69.44
CDY19742	Canola	nucleus	70.22	68.9
CDY53338	Canola	cytosol, mitochondrion, nucleus	69.95	68.63
CDY05554	Canola	nucleus	68.31	67.93
CDY25013	Canola	nucleus	69.4	67.73
Bra020569.1-P	Field mustard	nucleus	69.4	67.73
TraesCS1B01G242400.1	Wheat	cytosol, peroxisome, plastid	60.38	65.0
TraesCS1A01G228100.1	Wheat	mitochondrion	58.74	63.61
HORVU1Hr1G059090.7	Barley	cytosol, peroxisome, plastid	60.93	63.35
TraesCS1B01G242300.1	Wheat	mitochondrion	57.92	62.54
TraesCS1B01G242200.1	Wheat	mitochondrion	57.38	61.95
EES19385	Sorghum	mitochondrion, nucleus, peroxisome, plastid	59.29	61.47
VIT_05s0077g01820.t01	Wine grape	cytosol, mitochondrion, peroxisome, plastid	67.49	61.44
Zm00001d037949_P001	Maize	mitochondrion	59.02	61.19
TraesCS1B01G033400.1	Wheat	cytosol, peroxisome	37.43	60.35
Os05t0358500-01	Rice	mitochondrion	57.38	59.49
TraesCS1D01G230000.2	Wheat	cytosol, peroxisome, plastid	59.56	59.24
TraesCS1D01G229600.2	Wheat	mitochondrion	58.47	58.31
TraesCS1D01G229700.1	Wheat	mitochondrion	58.47	58.15
HORVU1Hr1G059130.3	Barley	mitochondrion	59.02	57.29
TraesCS1A01G228000.1	Wheat	mitochondrion, peroxisome, plastid	57.65	56.57
TraesCS1A01G228200.1	Wheat	mitochondrion	50.55	48.05
HORVU1Hr1G059140.2	Barley	mitochondrion, plastid	33.88	46.62
TraesCS7B01G361000.1	Wheat	mitochondrion, peroxisome, plastid	43.99	46.0
VIT_04s0008g00740.t01	Wine grape	cytosol	38.8	40.69
VIT_08s0058g00660.t01	Wine grape	cytosol	40.16	37.31
VIT_04s0023g00690.t01	Wine grape	plastid	48.91	36.83
VIT_12s0059g01820.t01	Wine grape	plastid	42.35	32.77
VIT_19s0015g01920.t01	Wine grape	mitochondrion, nucleus, peroxisome	45.63	32.68
VIT_05s0020g02360.t01	Wine grape	cytosol	27.05	25.45
VIT_11s0016g03430.t01	Wine grape	cytosol	27.32	9.23

Protein Annotations

KEGG:04658+3.1.3.16	KEGG:04660+3.1.3.16	EntrezGene:100251160	wikigene:100251160	MapMan:18.4.24.2.5	Gene3D:3.60.40.10
ProteinID:CBI39528	ProteinID:CBI39528.3	UniProt:D7U9W4	EMBL:FN596746	GO:GO:0003674	GO:GO:0003824
GO:GO:0004722	GO:GO:0006464	GO:GO:0006470	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987
GO:GO:0016787	GO:GO:0019538	InterPro:IPR001932	InterPro:IPR036457	EntrezGene:LOC100251160	wikigene:LOC100251160
PFAM:PF00481	InterPro:PP2C	InterPro:PPM-type_dom_sf	InterPro:PPM-type_phosphatase_dom	PFscan:PS51746	PANTHER:PTHR13832
PANTHER:PTHR13832:SF514	SMART:SM00332	SUPFAM:SSF81606	TIGR:TC58443	UniParc:UPI00015C94D1	ArrayExpress:VIT_14s0060g02070
EnsemblPlantsGene:VIT_14s0060g02070	EnsemblPlants:VIT_14s0060g02070.t01	RefSeq:XP_002283583	RefSeq:XP_002283583.1	RefSeq:XP_010659641.1	RefSeq:XP_010659642.1
SEG:seg	:	:	:	:	:

Description

No Description!

Coordinates

chr14:+:1654895..1659342

Molecular Weight (calculated)

40766.3 Da

IEP (calculated)

6.883

GRAVY (calculated)

-0.311

Length

366 amino acids

Sequence
(BLAST)

001: MGHFSSMFNG WARSFSIKKA SSSGNCGGRE AVEVMAKEAK KNDLILHSSG FVNVNGSNNF TSLYSKRGEK GVNQDCFIVW EEFGGQEDML FCGVFDGHGP
101: WGHYVAKRVR ESMPSSLLCN WQETLAEASL DPDFDLQAEK KLHRFNIWKH SYLKTCAAID QELEHHRRID SFNSGTTALT IVRQGESIFV ANVGDSRAVL
201: ATMSDDGNLE PVQLTIDFKP NLPQEAERII QCKGRVFCLG DEPGVHRVWL PHEESPGLAM SRAFGDYCVK DFGLISVPEV TQRNITSRDQ FVVLATDGVW
301: DVVSNQEAVQ IVSSTPNRAK SAKRLVECAA RAWKRKRRGI AVDDISAVCL FFHPCSIQQV TVPKES

Best Arabidopsis Sequence Match ( AT5G27930.1 )
(BLAST)

001: MGHFSSMFNG LARSFSIKKV KNNNGNCDAK EAADEMASEA KKKELILKSS GYVNVQGSNN LASLFSKRGE KGVNQDCALV WEGFGCQEDM IFCGIFDGHG
101: PWGHYVAKQV RNSMPLSLLC NWQKILAQAT LEPELDLEGS NKKISRFDIW KQSYLKTCAT VDQELEHHRK IDSYYSGTTA LTIVRQGEVI YVANVGDSRA
201: VLAMESDEGS LVAVQLTLDF KPNLPQEKER IIGCKGRVFC LDDEPGVHRV WQPDAETPGL AMSRAFGDYC IKEYGLVSVP EVTQRHISTK DHFIILASDG
301: IWDVISNQEA IEIVSSTAER PKAAKRLVEQ AVRAWKKKRR GYSMDDMSVV CLFLHSSSSS SLSQHHHAMT ILK

Arabidopsis Description

PPC6-7Probable protein phosphatase 2C 73 [Source:UniProtKB/Swiss-Prot;Acc:Q0WRB2]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.