Subcellular Localization
min:
: max
Winner_takes_all: mitochondrion, peroxisome, plastid
Predictor Summary:
Predictor Summary:
- plastid 2
- peroxisome 1
- mitochondrion 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| TraesCS5A01G168700.2 | |
| TraesCS5B01G165500.2 | |
| TraesCS5D01G173000.1 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT3G05640.1 | TraesCS5A01G168700.2 | AT4G08520.1 | 21798944 |
| AT3G05640.1 | TraesCS5B01G165500.2 | AT4G08520.1 | 21798944 |
| AT3G05640.1 | TraesCS5D01G173000.1 | AT4G08520.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS1B01G033400.1 | Wheat | cytosol, peroxisome | 48.0 | 74.01 |
| TraesCS1B01G242400.1 | Wheat | cytosol, peroxisome, plastid | 69.14 | 71.18 |
| HORVU1Hr1G059090.7 | Barley | cytosol, peroxisome, plastid | 67.14 | 66.76 |
| TraesCS1B01G242200.1 | Wheat | mitochondrion | 62.86 | 64.9 |
| TraesCS1B01G242300.1 | Wheat | mitochondrion | 61.43 | 63.42 |
| EES19385 | Sorghum | mitochondrion, nucleus, peroxisome, plastid | 60.57 | 60.06 |
| Os05t0358500-01 | Rice | mitochondrion | 58.57 | 58.07 |
| Zm00001d037949_P001 | Maize | mitochondrion | 58.29 | 57.79 |
| GSMUA_Achr11P... | Banana | mitochondrion | 47.71 | 48.83 |
| GSMUA_Achr8P10330_001 | Banana | mitochondrion, nucleus | 46.29 | 46.29 |
| VIT_14s0060g02070.t01 | Wine grape | mitochondrion | 46.0 | 43.99 |
| KRG96758 | Soybean | cytosol, mitochondrion, peroxisome | 45.43 | 43.09 |
| PGSC0003DMT400063747 | Potato | cytosol, mitochondrion, peroxisome | 45.14 | 43.05 |
| KRH68473 | Soybean | cytosol, mitochondrion, peroxisome | 45.43 | 42.86 |
| Solyc01g100040.2.1 | Tomato | cytosol, mitochondrion, peroxisome | 44.86 | 42.78 |
| Bra040530.1-P | Field mustard | cytosol, nucleus, peroxisome | 42.0 | 42.24 |
| CDY18810 | Canola | cytosol, nucleus, peroxisome | 42.0 | 42.24 |
| AT3G05640.1 | Thale cress | cytosol, mitochondrion, peroxisome | 42.57 | 41.62 |
| KRG92929 | Soybean | nucleus | 43.43 | 41.42 |
| KRH33864 | Soybean | nucleus | 43.14 | 41.03 |
| CDY53338 | Canola | cytosol, mitochondrion, nucleus | 42.0 | 39.41 |
| CDY19742 | Canola | nucleus | 42.0 | 39.41 |
| Bra036606.1-P | Field mustard | nucleus | 41.71 | 39.14 |
| CDY05554 | Canola | nucleus | 41.14 | 39.13 |
| AT5G27930.1 | Thale cress | nucleus | 41.14 | 38.61 |
| Bra020569.1-P | Field mustard | nucleus | 41.14 | 38.4 |
| CDY25013 | Canola | nucleus | 40.86 | 38.13 |
| KRH50799 | Soybean | cytosol | 38.86 | 37.06 |
| AT3G16800.2 | Thale cress | nucleus | 36.86 | 36.75 |
| CDY67911 | Canola | nucleus | 36.86 | 36.75 |
| Bra021202.1-P | Field mustard | nucleus | 36.86 | 36.75 |
| CDY50503 | Canola | nucleus | 36.86 | 36.75 |
| Solyc01g065700.2.1 | Tomato | nucleus | 37.71 | 36.57 |
| PGSC0003DMT400015950 | Potato | plastid | 37.14 | 36.31 |
| Bra022179.1-P | Field mustard | nucleus | 36.29 | 36.18 |
| CDX95903 | Canola | nucleus | 36.29 | 36.18 |
| CDX92097 | Canola | nucleus | 36.29 | 36.18 |
| KRH02293 | Soybean | cytosol | 38.86 | 36.17 |
| VIT_05s0077g01820.t01 | Wine grape | cytosol, mitochondrion, peroxisome, plastid | 40.57 | 35.32 |
| TraesCS6B01G216900.1 | Wheat | nucleus, peroxisome, plastid | 30.0 | 29.41 |
| TraesCS4B01G162100.1 | Wheat | cytosol, mitochondrion, peroxisome | 32.0 | 25.57 |
| TraesCS2B01G229000.1 | Wheat | cytosol, peroxisome, plastid | 30.86 | 25.06 |
| TraesCS5B01G149300.1 | Wheat | cytosol | 30.29 | 24.82 |
| TraesCS7B01G137400.2 | Wheat | plastid | 34.29 | 20.87 |
| TraesCS2B01G291800.1 | Wheat | mitochondrion | 31.14 | 20.6 |
| TraesCS6B01G229600.1 | Wheat | mitochondrion | 29.71 | 20.08 |
| TraesCS2B01G166100.3 | Wheat | cytosol | 21.71 | 16.27 |
| TraesCS6B01G231400.1 | Wheat | plastid | 20.29 | 6.54 |
Protein Annotations
| KEGG:04658+3.1.3.16 | KEGG:04660+3.1.3.16 | MapMan:18.4.24.2.5 | Gene3D:3.60.40.10 | GO:GO:0003674 | GO:GO:0003824 |
| GO:GO:0004722 | GO:GO:0006464 | GO:GO:0006470 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009987 |
| GO:GO:0016787 | GO:GO:0019538 | InterPro:IPR001932 | InterPro:IPR036457 | PFAM:PF00481 | InterPro:PP2C |
| InterPro:PPM-type_dom_sf | InterPro:PPM-type_phosphatase_dom | PFscan:PS51746 | PANTHER:PTHR13832 | PANTHER:PTHR13832:SF198 | SMART:SM00332 |
| SUPFAM:SSF81606 | EnsemblPlantsGene:TraesCS7B01G361000 | EnsemblPlants:TraesCS7B01G361000.1 | TIGR:cd00143 | SEG:seg | : |
Description
No Description!
Coordinates
chr7B:+:623109145..623125957
Molecular Weight (calculated)
38635.6 Da
IEP (calculated)
7.782
GRAVY (calculated)
-0.158
Length
350 amino acids
Sequence
(BLAST)
(BLAST)
001: MRQISSMLQG LARSMSLGKE RKVEEEHQGT VMRLSGTLWG KGSETFAAAC SRRGEKGTNQ DTSIVSEAIH SPDYVLPLGT ILDHVAHKFL GYGACLLRIR
101: VPGRRHLLRH LRLARPVGPL RPKAVRESLP QSLLCRWQEA VTLASLIDGE KRLIDCQFDL VRKSYLAAAA AVDEELRRSR RLDAINNGCT ALSIMKQSDL
201: MVVANVSDSR AVLATTSDDG DITTVQLTVD FKPDLPQEKA RILQCEGRVH CLNDNPGVHR VWVPHREAPG LAMSRAFGDY CVKDYGVILV PEVTWRRITA
301: QDQFVILATD GSDLMVVANV SDSRAILATM SDDGDITTVQ LTVDFKPDLP
101: VPGRRHLLRH LRLARPVGPL RPKAVRESLP QSLLCRWQEA VTLASLIDGE KRLIDCQFDL VRKSYLAAAA AVDEELRRSR RLDAINNGCT ALSIMKQSDL
201: MVVANVSDSR AVLATTSDDG DITTVQLTVD FKPDLPQEKA RILQCEGRVH CLNDNPGVHR VWVPHREAPG LAMSRAFGDY CVKDYGVILV PEVTWRRITA
301: QDQFVILATD GSDLMVVANV SDSRAILATM SDDGDITTVQ LTVDFKPDLP
001: MGHFSSMFNG IARSFSIKKA KNINSSKSYA KEATDEMARE AKKKELILRS SGCINADGSN NLASVFSRRG EKGVNQDCAI VWEGYGCQED MIFCGIFDGH
101: GPWGHFVSKQ VRNSMPISLL CNWKETLSQT TIAEPDKELQ RFAIWKYSFL KTCEAVDLEL EHHRKIDSFN SGTTALTIVR QGDVIYIANV GDSRAVLATV
201: SDEGSLVAVQ LTVDFKPNLP QEEERIIGCN GRVFCLQDEP GVHRVWQPVD ESPGLAMSRA FGDYCIKDYG LVSVPEVTQR HISIRDQFII LATDGVWDVI
301: SNQEAIDIVS STAERAKAAK RLVQQAVRAW NRKRRGIAMD DISAVCLFFH SSSSSPSL
101: GPWGHFVSKQ VRNSMPISLL CNWKETLSQT TIAEPDKELQ RFAIWKYSFL KTCEAVDLEL EHHRKIDSFN SGTTALTIVR QGDVIYIANV GDSRAVLATV
201: SDEGSLVAVQ LTVDFKPNLP QEEERIIGCN GRVFCLQDEP GVHRVWQPVD ESPGLAMSRA FGDYCIKDYG LVSVPEVTQR HISIRDQFII LATDGVWDVI
301: SNQEAIDIVS STAERAKAAK RLVQQAVRAW NRKRRGIAMD DISAVCLFFH SSSSSPSL
Arabidopsis Description
Probable protein phosphatase 2C 34 [Source:UniProtKB/Swiss-Prot;Acc:Q9M9W9]
SUBAcon: [mitochondrion,peroxisome,cytosol]
SUBAcon: [mitochondrion,peroxisome,cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.