CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
mitochondrion 2
plastid 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
KRH23291
KRH44115
KRH47095

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G05640.1	KRH23291	AT4G08520.1	21798944
AT3G05640.1	KRH44115	AT4G08520.1	21798944
AT3G05640.1	KRH47095	AT4G08520.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRG92929	Soybean	nucleus	95.92	96.19
KRG96758	Soybean	cytosol, mitochondrion, peroxisome	81.52	81.3
KRH68473	Soybean	cytosol, mitochondrion, peroxisome	81.79	81.13
VIT_14s0060g02070.t01	Wine grape	mitochondrion	76.63	77.05
Solyc01g100040.2.1	Tomato	cytosol, mitochondrion, peroxisome	72.01	72.21
PGSC0003DMT400063747	Potato	cytosol, mitochondrion, peroxisome	71.74	71.93
Bra040530.1-P	Field mustard	cytosol, nucleus, peroxisome	67.93	71.84
CDY18810	Canola	cytosol, nucleus, peroxisome	67.93	71.84
GSMUA_Achr11P...	Banana	mitochondrion	65.76	70.76
AT3G05640.1	Thale cress	cytosol, mitochondrion, peroxisome	68.75	70.67
GSMUA_Achr8P10330_001	Banana	mitochondrion, nucleus	66.03	69.43
AT5G27930.1	Thale cress	nucleus	68.75	67.83
Bra036606.1-P	Field mustard	nucleus	68.48	67.56
CDY05554	Canola	nucleus	67.39	67.39
CDY19742	Canola	nucleus	67.93	67.02
Bra020569.1-P	Field mustard	nucleus	68.21	66.93
CDY53338	Canola	cytosol, mitochondrion, nucleus	67.66	66.76
CDY25013	Canola	nucleus	67.39	66.13
TraesCS1A01G228100.1	Wheat	mitochondrion	57.07	62.13
TraesCS1B01G242400.1	Wheat	cytosol, peroxisome, plastid	57.34	62.06
TraesCS1B01G242300.1	Wheat	mitochondrion	56.52	61.36
KRH50799	Soybean	cytosol	61.14	61.31
Zm00001d037949_P001	Maize	mitochondrion	58.42	60.91
EES19385	Sorghum	mitochondrion, nucleus, peroxisome, plastid	58.15	60.62
TraesCS1B01G242200.1	Wheat	mitochondrion	55.71	60.47
HORVU1Hr1G059090.7	Barley	cytosol, peroxisome, plastid	57.61	60.23
KRH02293	Soybean	cytosol	61.41	60.11
Os05t0358500-01	Rice	mitochondrion	55.71	58.07
TraesCS1B01G033400.1	Wheat	cytosol, peroxisome	35.6	57.71
TraesCS1D01G229600.2	Wheat	mitochondrion	56.52	56.68
TraesCS1D01G230000.2	Wheat	cytosol, peroxisome, plastid	55.98	55.98
TraesCS1D01G229700.1	Wheat	mitochondrion	55.98	55.98
HORVU1Hr1G059130.3	Barley	mitochondrion	57.34	55.97
TraesCS1A01G228000.1	Wheat	mitochondrion, peroxisome, plastid	55.98	55.23
TraesCS1A01G228200.1	Wheat	mitochondrion	47.55	45.45
HORVU1Hr1G059140.2	Barley	mitochondrion, plastid	32.61	45.11
KRH65540	Soybean	cytosol	24.73	44.39
KRH36356	Soybean	cytosol	25.0	44.23
KRH45219	Soybean	vacuole	11.41	44.21
KRH45221	Soybean	cytosol, mitochondrion, peroxisome	20.11	43.27
TraesCS7B01G361000.1	Wheat	mitochondrion, peroxisome, plastid	41.03	43.14
KRG93121	Soybean	plastid	41.58	41.92
KRH76051	Soybean	cytoskeleton, cytosol, peroxisome	32.88	41.72
KRH52174	Soybean	cytoskeleton, cytosol, peroxisome	37.23	39.94
KRH65533	Soybean	cytosol	22.83	39.81
KRH05503	Soybean	cytoskeleton, cytosol, peroxisome	36.96	39.53
KRH65545	Soybean	cytosol, peroxisome, plastid	22.01	36.49
KRH00931	Soybean	plastid	47.01	35.52
KRH65575	Soybean	cytosol	10.6	35.45
KRH40292	Soybean	plastid	47.01	35.38
KRH01535	Soybean	cytosol	43.48	35.16
KRH00350	Soybean	cytosol, peroxisome, plastid	40.22	34.91
KRH15511	Soybean	cytosol, nucleus, peroxisome	22.28	34.45
KRH40835	Soybean	nucleus, peroxisome, plastid	40.49	34.33
KRH56012	Soybean	nucleus	40.76	31.85
KRH25524	Soybean	nucleus	40.76	31.85
KRH26917	Soybean	cytosol, plastid	40.49	31.43
KRH22416	Soybean	nucleus, plastid	40.49	31.37
KRH45222	Soybean	nucleus	14.95	23.71
KRH11326	Soybean	cytosol, mitochondrion, nucleus, plastid	26.36	22.51
KRH20951	Soybean	plastid	26.09	22.27
KRH50972	Soybean	cytosol	25.0	21.75
KRH02158	Soybean	cytosol	24.18	21.39
KRH39350	Soybean	cytosol	25.54	8.74
KRH76332	Soybean	cytosol	25.27	8.49

Protein Annotations

KEGG:04658+3.1.3.16	KEGG:04660+3.1.3.16	EntrezGene:100794039	MapMan:18.4.24.2.5	Gene3D:3.60.40.10	EMBL:ACUP02006561
EnsemblPlantsGene:GLYMA_10G150100	GO:GO:0003674	GO:GO:0003824	GO:GO:0004722	GO:GO:0006464	GO:GO:0006470
GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016787	GO:GO:0019538	UniProt:I1LB78
InterPro:IPR001932	InterPro:IPR036457	EnsemblPlants:KRH33864	ProteinID:KRH33864	ProteinID:KRH33864.1	PFAM:PF00481
InterPro:PP2C	InterPro:PPM-type_dom_sf	InterPro:PPM-type_phosphatase_dom	PFscan:PS51746	PANTHER:PTHR13832	PANTHER:PTHR13832:SF514
SMART:SM00332	SUPFAM:SSF81606	UniParc:UPI000233C93E	:	:	:

Description

hypothetical protein

Coordinates

chr10:-:38541140..38544102

Molecular Weight (calculated)

41128.6 Da

IEP (calculated)

6.061

GRAVY (calculated)

-0.360

Length

368 amino acids

Sequence
(BLAST)

001: MGHFSSAFNR LAKSFATKKG RSSDECNGRE AAVAMAKEAK RNHFMLHSSG TVNVDGSNNF ASVFSKKGQK GVNQDCCIVW EEFGCQEDMI FCGIFDGHGP
101: WGHFVAKRVR KSMPTSLLCN WQETLSQSPL DSDVDFDVET EKKQHRFNMW KHSYLKTCAA IDRELEQNRK IDSFYSGTTA LSIVRQGELI IIANVGDSRA
201: VLATTSDDGS LVPVQLTVDF KPNLPQEAER ILESNGRVFC LDDEPGVHRV WLPDEEFPGL AMSRAFGDYC VKKYGLISVP EVTQRNITSK DQFVVLATDG
301: VWDVISNQEA VDIVSSTPDR TDSSKRLVEC AMRAWKRKRR GIAMDDISAI CLFFHSSPSL DQVATLEE

Best Arabidopsis Sequence Match ( AT5G27930.1 )
(BLAST)

001: MGHFSSMFNG LARSFSIKKV KNNNGNCDAK EAADEMASEA KKKELILKSS GYVNVQGSNN LASLFSKRGE KGVNQDCALV WEGFGCQEDM IFCGIFDGHG
101: PWGHYVAKQV RNSMPLSLLC NWQKILAQAT LEPELDLEGS NKKISRFDIW KQSYLKTCAT VDQELEHHRK IDSYYSGTTA LTIVRQGEVI YVANVGDSRA
201: VLAMESDEGS LVAVQLTLDF KPNLPQEKER IIGCKGRVFC LDDEPGVHRV WQPDAETPGL AMSRAFGDYC IKEYGLVSVP EVTQRHISTK DHFIILASDG
301: IWDVISNQEA IEIVSSTAER PKAAKRLVEQ AVRAWKKKRR GYSMDDMSVV CLFLHSSSSS SLSQHHHAMT ILK

Arabidopsis Description

PPC6-7Probable protein phosphatase 2C 73 [Source:UniProtKB/Swiss-Prot;Acc:Q0WRB2]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.