Factsheet for TraesCS1A01G228200.1

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

mitochondrion 4
plastid 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	mitochondrion
Any Predictor:	cytosol, mitochondrion, plastid
MultiLoc:	mitochondrion
Predotar:	mitochondrion
PProwler:	mitochondrion
TargetP:	mitochondrion
WoLF PSORT:	plastid
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS5A01G168700.2
TraesCS5B01G165500.2
TraesCS5D01G173000.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G05640.1	TraesCS5A01G168700.2	AT4G08520.1	21798944
AT3G05640.1	TraesCS5B01G165500.2	AT4G08520.1	21798944
AT3G05640.1	TraesCS5D01G173000.1	AT4G08520.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS1B01G033400.1	Wheat	cytosol, peroxisome	52.21	88.55
HORVU1Hr1G059090.7	Barley	cytosol, peroxisome, plastid	70.91	77.56
TraesCS1A01G228100.1	Wheat	mitochondrion	66.49	75.74
EES19385	Sorghum	mitochondrion, nucleus, peroxisome, plastid	63.9	69.69
Zm00001d037949_P001	Maize	mitochondrion	61.82	67.42
TraesCS1A01G228000.1	Wheat	mitochondrion, peroxisome, plastid	64.42	66.49
Os05t0358500-01	Rice	mitochondrion	60.78	66.29
GSMUA_Achr11P...	Banana	mitochondrion	51.17	57.6
GSMUA_Achr8P10330_001	Banana	mitochondrion, nucleus	50.65	55.71
VIT_14s0060g02070.t01	Wine grape	mitochondrion	48.05	50.55
Bra040530.1-P	Field mustard	cytosol, nucleus, peroxisome	45.45	50.29
CDY18810	Canola	cytosol, nucleus, peroxisome	45.45	50.29
AT3G05640.1	Thale cress	cytosol, mitochondrion, peroxisome	46.23	49.72
KRH68473	Soybean	cytosol, mitochondrion, peroxisome	47.79	49.6
KRG96758	Soybean	cytosol, mitochondrion, peroxisome	47.53	49.59
PGSC0003DMT400063747	Potato	cytosol, mitochondrion, peroxisome	47.27	49.59
Solyc01g100040.2.1	Tomato	cytosol, mitochondrion, peroxisome	47.01	49.32
CDY05554	Canola	nucleus	45.71	47.83
KRG92929	Soybean	nucleus	45.45	47.68
KRH33864	Soybean	nucleus	45.45	47.55
CDY19742	Canola	nucleus	45.71	47.19
Bra036606.1-P	Field mustard	nucleus	45.71	47.19
AT5G27930.1	Thale cress	nucleus	45.71	47.19
Bra020569.1-P	Field mustard	nucleus	45.71	46.93
CDY25013	Canola	nucleus	45.45	46.67
CDY53338	Canola	cytosol, mitochondrion, nucleus	45.19	46.65
AT3G16800.2	Thale cress	nucleus	42.08	46.15
Bra021202.1-P	Field mustard	nucleus	41.56	45.58
CDY50503	Canola	nucleus	41.56	45.58
CDY67911	Canola	nucleus	41.56	45.58
Solyc01g065700.2.1	Tomato	nucleus	42.34	45.15
PGSC0003DMT400015950	Potato	plastid	41.56	44.69
CDX95903	Canola	nucleus	40.26	44.16
Bra022179.1-P	Field mustard	nucleus	40.0	43.87
KRH50799	Soybean	cytosol	41.56	43.6
CDX92097	Canola	nucleus	39.74	43.59
KRH02293	Soybean	cytosol	41.82	42.82
VIT_05s0077g01820.t01	Wine grape	cytosol, mitochondrion, peroxisome, plastid	44.68	42.79
TraesCS6A01G187700.1	Wheat	cytosol, nucleus, peroxisome	31.43	33.52
TraesCS2A01G201900.1	Wheat	cytosol, peroxisome, plastid	31.43	28.27
TraesCS5A01G150700.1	Wheat	cytosol	29.87	26.93
TraesCS7A01G241800.1	Wheat	nucleus	36.62	26.91
TraesCS6A01G193100.1	Wheat	mitochondrion	32.21	23.94
TraesCS2A01G274100.1	Wheat	mitochondrion	32.21	23.48
TraesCS2A01G141100.2	Wheat	cytosol	21.04	17.27
TraesCS6A01G191000.1	Wheat	plastid	22.08	7.83

Protein Annotations

KEGG:04658+3.1.3.16	KEGG:04660+3.1.3.16	MapMan:18.4.24.2.5	Gene3D:3.60.40.10	GO:GO:0003674	GO:GO:0003824
GO:GO:0004722	GO:GO:0006464	GO:GO:0006470	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987
GO:GO:0016787	GO:GO:0019538	InterPro:IPR001932	InterPro:IPR036457	PFAM:PF00481	InterPro:PP2C
InterPro:PPM-type_dom_sf	InterPro:PPM-type_phosphatase_dom	PFscan:PS51746	PANTHER:PTHR13832	PANTHER:PTHR13832:SF198	SMART:SM00332
SUPFAM:SSF81606	EnsemblPlantsGene:TraesCS1A01G228200	EnsemblPlants:TraesCS1A01G228200.1	TIGR:cd00143	SEG:seg	:

Description

No Description!

Coordinates

chr1A:-:399471611..399473938

Molecular Weight (calculated)

42216.1 Da

IEP (calculated)

8.713

GRAVY (calculated)

-0.446

Length

385 amino acids

Sequence
(BLAST)

001: MRQISSMLQG LARSMSLGKE RKQAEEAQGT VLRSSGTLWG EGSETLAAAC SRRGEKGTNQ DTSIVWEGYG CQDDTIFCGV FDGHGQWGHY VAKAVRESLP
101: QRLLCRWQEA VALASLIDGE KRLGDCQFDL LRQSYLAAAA AVDDELRRSR RLDAVNSGCT ALSIVKQGDL MVVANVGDSR AVLATTSDDG DVTAVQLTVD
201: FKPDLPQEKA RITQCEGRVH CLDDEPGVHR VWVPHREAPG LAMSRAFGDY CVKDYGVISA PEVTQRRITA QDQFVILATD GVSDRFLHSR KLFLFSVQRT
301: DHAWRTSWAG LGRALQRGGR ADRGGDAGQG EGREAARRVR RPRVEAQAAG RRRRRLLGGL PLLPHAGALN EPPRDRDCIA VRARG

Best Arabidopsis Sequence Match ( AT3G05640.1 )
(BLAST)

001: MGHFSSMFNG IARSFSIKKA KNINSSKSYA KEATDEMARE AKKKELILRS SGCINADGSN NLASVFSRRG EKGVNQDCAI VWEGYGCQED MIFCGIFDGH
101: GPWGHFVSKQ VRNSMPISLL CNWKETLSQT TIAEPDKELQ RFAIWKYSFL KTCEAVDLEL EHHRKIDSFN SGTTALTIVR QGDVIYIANV GDSRAVLATV
201: SDEGSLVAVQ LTVDFKPNLP QEEERIIGCN GRVFCLQDEP GVHRVWQPVD ESPGLAMSRA FGDYCIKDYG LVSVPEVTQR HISIRDQFII LATDGVWDVI
301: SNQEAIDIVS STAERAKAAK RLVQQAVRAW NRKRRGIAMD DISAVCLFFH SSSSSPSL

Arabidopsis Description

Probable protein phosphatase 2C 34 [Source:UniProtKB/Swiss-Prot;Acc:Q9M9W9]
SUBAcon: [mitochondrion,peroxisome,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.