Factsheet for Bra040530.1-P

Subcellular Localization

min:

: max

Winner_takes_all: peroxisome, nucleus, cytosol

Predictor Summary:

nucleus 3
mitochondrion 2
peroxisome 1
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra037861.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G05640.1	Bra037861.1-P	AT4G08520.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY18810	Canola	cytosol, nucleus, peroxisome	100.0	100.0
AT3G05640.1	Thale cress	cytosol, mitochondrion, peroxisome	87.07	84.64
Bra036606.1-P	Field mustard	nucleus	81.03	75.6
Bra020569.1-P	Field mustard	nucleus	81.32	75.47
KRG96758	Soybean	cytosol, mitochondrion, peroxisome	75.86	71.54
KRH68473	Soybean	cytosol, mitochondrion, peroxisome	75.29	70.62
VIT_14s0060g02070.t01	Wine grape	mitochondrion	72.41	68.85
KRH33864	Soybean	nucleus	71.84	67.93
PGSC0003DMT400063747	Potato	cytosol, mitochondrion, peroxisome	71.55	67.85
KRG92929	Soybean	nucleus	71.55	67.85
Solyc01g100040.2.1	Tomato	cytosol, mitochondrion, peroxisome	70.98	67.3
GSMUA_Achr11P...	Banana	mitochondrion	64.37	65.5
GSMUA_Achr8P10330_001	Banana	mitochondrion, nucleus	65.23	64.86
TraesCS1B01G242400.1	Wheat	cytosol, peroxisome, plastid	59.77	61.18
TraesCS1B01G242200.1	Wheat	mitochondrion	58.62	60.18
TraesCS1B01G242300.1	Wheat	mitochondrion	58.62	60.18
TraesCS1A01G228100.1	Wheat	mitochondrion	58.05	59.76
EES19385	Sorghum	mitochondrion, nucleus, peroxisome, plastid	60.06	59.21
HORVU1Hr1G059090.7	Barley	cytosol, peroxisome, plastid	59.48	58.81
Os05t0358500-01	Rice	mitochondrion	58.62	57.79
Zm00001d037949_P001	Maize	mitochondrion	58.62	57.79
TraesCS1D01G230000.2	Wheat	cytosol, peroxisome, plastid	58.91	55.71
Bra021202.1-P	Field mustard	nucleus	55.75	55.27
TraesCS1B01G033400.1	Wheat	cytosol, peroxisome	35.92	55.07
TraesCS1A01G228000.1	Wheat	mitochondrion, peroxisome, plastid	58.62	54.69
TraesCS1D01G229700.1	Wheat	mitochondrion	57.76	54.62
TraesCS1D01G229600.2	Wheat	mitochondrion	57.47	54.5
HORVU1Hr1G059130.3	Barley	mitochondrion	58.33	53.85
Bra022179.1-P	Field mustard	nucleus	54.02	53.56
TraesCS1A01G228200.1	Wheat	mitochondrion	50.29	45.45
TraesCS7B01G361000.1	Wheat	mitochondrion, peroxisome, plastid	42.24	42.0
Bra034542.1-P	Field mustard	cytosol	38.22	40.8
Bra037033.1-P	Field mustard	cytosol	38.22	40.8
HORVU1Hr1G059140.2	Barley	mitochondrion, plastid	31.03	40.6
Bra009643.1-P	Field mustard	cytosol, peroxisome, plastid	40.52	39.06
Bra009875.1-P	Field mustard	cytosol	36.49	37.57
Bra040598.1-P	Field mustard	plastid	44.83	34.06
Bra021414.1-P	Field mustard	plastid	45.4	33.83
Bra035360.1-P	Field mustard	plastid	41.67	33.1
Bra033411.1-P	Field mustard	mitochondrion	39.66	32.62
Bra001060.1-P	Field mustard	plastid	44.25	32.29
Bra030536.1-P	Field mustard	cytosol, peroxisome, plastid	40.8	31.77
Bra026075.1-P	Field mustard	cytosol, peroxisome, plastid	43.39	31.33
Bra035131.1-P	Field mustard	nucleus	43.39	31.01
Bra034206.1-P	Field mustard	plastid	39.66	29.68
Bra001189.1-P	Field mustard	plastid	27.01	26.55
Bra040230.1-P	Field mustard	cytosol	22.99	24.54
Bra021332.1-P	Field mustard	endoplasmic reticulum, extracellular, golgi, mitochondrion, peroxisome, plasma membrane, plastid, vacuole	10.06	23.97
Bra040228.1-P	Field mustard	cytosol, peroxisome, plastid	8.05	20.29
Bra040822.1-P	Field mustard	cytosol	27.59	9.94

Protein Annotations

KEGG:04658+3.1.3.16	KEGG:04660+3.1.3.16	MapMan:18.4.24.2.5	Gene3D:3.60.40.10	EnsemblPlantsGene:Bra040530	EnsemblPlants:Bra040530.1
EnsemblPlants:Bra040530.1-P	GO:GO:0003674	GO:GO:0003824	GO:GO:0004722	GO:GO:0005575	GO:GO:0005623
GO:GO:0005886	GO:GO:0006464	GO:GO:0006470	GO:GO:0006950	GO:GO:0008150	GO:GO:0008152
GO:GO:0009414	GO:GO:0009628	GO:GO:0009987	GO:GO:0016020	GO:GO:0016787	GO:GO:0019538
GO:GO:0040007	GO:GO:0045926	GO:GO:1904526	InterPro:IPR001932	InterPro:IPR036457	UniProt:M4FHF2
PFAM:PF00481	InterPro:PP2C	InterPro:PPM-type_dom_sf	InterPro:PPM-type_phosphatase_dom	PFscan:PS51746	PANTHER:PTHR13832
PANTHER:PTHR13832:SF198	SMART:SM00332	SUPFAM:SSF81606	UniParc:UPI000253ED9C	SEG:seg	:

Description

AT3G05640 (E=2e-173) | protein phosphatase 2C, putative / PP2C, putative

Coordinates

chrScaffold000215:+:35214..37203

Molecular Weight (calculated)

38728.8 Da

IEP (calculated)

5.857

GRAVY (calculated)

-0.345

Length

348 amino acids

Sequence
(BLAST)

001: MGHFSSMFNS LARSFSNKKD NNNGKSNAKE AADEMAREAK KKAMILKSSG CVNADGSNNL ASVFSRRGEK GVNQDCAIVW EGFGCQEEMI FCGIFDGHGP
101: WGHFVSKQVR NSMPISLLCN WQETLSQTTL VEPETDQRFA IWKHLYLKTC ADVDQELQHH RKIDTFNSGT TALTVVRQGE VIYVANVGDS RAVLATVSEE
201: GSLTAVQLTV DFKPNIPQEE ERIIGCNGRV FCLEDEPGVH RVWQPEEESP GLAMSRAFGD YCIKEYGLVS VPEVTQRHIS TRDQFVILAT DGVWDVISNE
301: EAIDIVSSTA ERPKAAKRLV EQAVKAWNKK RRGIAMDDIS AVCLFFHS

Best Arabidopsis Sequence Match ( AT3G05640.3 )
(BLAST)

001: MGHFSSMFNG IARSFSIKKA KNINSSKSYA KEATDEMARE AKKKELILRS SGCINADGSN NLASVFSRRG EKGVNQDCAI VWEGYGCQED MIFCGIFDGH
101: GPWGHFVSKQ VRNSMPISLL CNWKETLSQT TIAEPDKELQ RFAIWKYSFL KTCEAVDLEL EHHRKIDSFN SGTTALTIVR QGDVIYIANV GDSRAVLATV
201: SDEGSLVAVQ LTVDFKPNLP QEEERIIGCN GRVFCLQDEP GVHRVWQPVD ESPGLAMSRA FGDYCIKDYG LVSVPEVTQR HISIRDQFII LATDGVWDVI
301: SNQEAIDIVS STAERAKAAK RLVQQAVRAW NRKRRGIAMD DISAVCLFFH SSSSSPSL

Arabidopsis Description

Probable protein phosphatase 2C 34 [Source:UniProtKB/Swiss-Prot;Acc:Q9M9W9]
SUBAcon: [mitochondrion,peroxisome,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.