Factsheet for TraesCS1D01G230000.2

Subcellular Localization

min:

: max

Winner_takes_all: peroxisome, plastid, cytosol

Predictor Summary:

peroxisome 1
mitochondrion 1
plastid 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, peroxisome, plastid
Any Predictor:	cytosol, mitochondrion, peroxisome, plastid
MultiLoc:	peroxisome
PProwler:	mitochondrion
WoLF PSORT:	plastid
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS5A01G168700.2
TraesCS5B01G165500.2
TraesCS5D01G173000.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G05640.1	TraesCS5A01G168700.2	AT4G08520.1	21798944
AT3G05640.1	TraesCS5B01G165500.2	AT4G08520.1	21798944
AT3G05640.1	TraesCS5D01G173000.1	AT4G08520.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS1B01G242400.1	Wheat	cytosol, peroxisome, plastid	89.67	97.06
HORVU1Hr1G059090.7	Barley	cytosol, peroxisome, plastid	88.59	92.61
TraesCS1D01G229700.1	Wheat	mitochondrion	80.71	80.71
TraesCS1D01G229600.2	Wheat	mitochondrion	78.8	79.02
EES19385	Sorghum	mitochondrion, nucleus, peroxisome, plastid	75.54	78.75
Zm00001d037949_P001	Maize	mitochondrion	72.83	75.92
Os05t0358500-01	Rice	mitochondrion	71.74	74.79
GSMUA_Achr11P...	Banana	mitochondrion	61.96	66.67
GSMUA_Achr8P10330_001	Banana	mitochondrion, nucleus	60.05	63.14
VIT_14s0060g02070.t01	Wine grape	mitochondrion	59.24	59.56
CDY18810	Canola	cytosol, nucleus, peroxisome	55.71	58.91
Bra040530.1-P	Field mustard	cytosol, nucleus, peroxisome	55.71	58.91
PGSC0003DMT400063747	Potato	cytosol, mitochondrion, peroxisome	58.15	58.31
KRG96758	Soybean	cytosol, mitochondrion, peroxisome	58.42	58.27
KRH68473	Soybean	cytosol, mitochondrion, peroxisome	58.7	58.22
AT3G05640.1	Thale cress	cytosol, mitochondrion, peroxisome	56.25	57.82
Solyc01g100040.2.1	Tomato	cytosol, mitochondrion, peroxisome	57.61	57.77
KRG92929	Soybean	nucleus	56.25	56.4
KRH33864	Soybean	nucleus	55.98	55.98
CDY05554	Canola	nucleus	55.43	55.43
Bra036606.1-P	Field mustard	nucleus	55.16	54.42
Bra020569.1-P	Field mustard	nucleus	55.43	54.4
CDY25013	Canola	nucleus	55.16	54.13
AT5G27930.1	Thale cress	nucleus	54.62	53.89
CDY19742	Canola	nucleus	54.62	53.89
CDY53338	Canola	cytosol, mitochondrion, nucleus	54.35	53.62
PGSC0003DMT400015950	Potato	plastid	51.09	52.51
AT3G16800.2	Thale cress	nucleus	50.0	52.42
CDY67911	Canola	nucleus	49.73	52.14
CDY50503	Canola	nucleus	49.73	52.14
Bra021202.1-P	Field mustard	nucleus	49.73	52.14
KRH50799	Soybean	cytosol	51.9	52.04
Solyc01g065700.2.1	Tomato	nucleus	50.82	51.8
KRH02293	Soybean	cytosol	52.17	51.06
Bra022179.1-P	Field mustard	nucleus	48.37	50.71
CDX92097	Canola	nucleus	48.1	50.43
CDX95903	Canola	nucleus	48.1	50.43
VIT_05s0077g01820.t01	Wine grape	cytosol, mitochondrion, peroxisome, plastid	54.89	50.25
TraesCS6D01G178400.1	Wheat	cytosol, nucleus, peroxisome	40.49	41.5
TraesCS2D01G214200.1	Wheat	cytosol, peroxisome, plastid	40.49	34.57
TraesCS5D01G155800.1	Wheat	cytosol	39.13	33.72
TraesCS4D01G159700.1	Wheat	cytosol	39.13	32.88
TraesCS7D01G240800.1	Wheat	mitochondrion	45.38	29.04
TraesCS6D01G181000.1	Wheat	mitochondrion	39.4	27.99
TraesCS2D01G273100.1	Wheat	mitochondrion	38.86	27.03
TraesCS2D01G144500.3	Wheat	cytosol	25.0	19.96
TraesCS6D01G174700.1	Wheat	plastid	25.0	8.47

Protein Annotations

KEGG:04658+3.1.3.16	KEGG:04660+3.1.3.16	MapMan:18.4.24.2.5	Gene3D:3.60.40.10	GO:GO:0003674	GO:GO:0003824
GO:GO:0004722	GO:GO:0006464	GO:GO:0006470	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987
GO:GO:0016787	GO:GO:0019538	InterPro:IPR001932	InterPro:IPR036457	PFAM:PF00481	InterPro:PP2C
InterPro:PPM-type_dom_sf	InterPro:PPM-type_phosphatase_dom	PFscan:PS51746	PANTHER:PTHR13832	PANTHER:PTHR13832:SF198	SMART:SM00332
SUPFAM:SSF81606	EnsemblPlantsGene:TraesCS1D01G230000	EnsemblPlants:TraesCS1D01G230000.2	TIGR:cd00143	:	:

Description

No Description!

Coordinates

chr1D:-:318161493..318164138

Molecular Weight (calculated)

40638.1 Da

IEP (calculated)

6.504

GRAVY (calculated)

-0.311

Length

368 amino acids

Sequence
(BLAST)

001: MRQISSMLQG LARSMSLGKE RKEAEEPQGT VLRSSGTLWG EGSETFAAAC SRRGEKGTNQ DTSIVWEGYG CQDDTIFCGV FDGHGQWGHY VAKAVRESLP
101: QQLLCRWQEA VALTSLIDGE KRLGDCQFDL LRQSYLAAAA AVDEELRRSR RLDAVNSGCT ALSIVKQGDL MVVANVGDSR AVLATTSDDG DVTAVQLTVD
201: FKPDLPQEKA RIIQCEGRVH CLDDEPGVHR VWVPHRDAPG LAMSRAFGDY CVKDYGVISA PEVTQRRITA RDQFVILATD GVSDRFLHSH KVFLLPAQQT
301: DHSWQHLGQV WDVLSNEEAV RIVAATPDRE KAAKRLVECA VRGWRRKRRG VAVDDCSAVC LFFHSPAP

Best Arabidopsis Sequence Match ( AT3G05640.1 )
(BLAST)

001: MGHFSSMFNG IARSFSIKKA KNINSSKSYA KEATDEMARE AKKKELILRS SGCINADGSN NLASVFSRRG EKGVNQDCAI VWEGYGCQED MIFCGIFDGH
101: GPWGHFVSKQ VRNSMPISLL CNWKETLSQT TIAEPDKELQ RFAIWKYSFL KTCEAVDLEL EHHRKIDSFN SGTTALTIVR QGDVIYIANV GDSRAVLATV
201: SDEGSLVAVQ LTVDFKPNLP QEEERIIGCN GRVFCLQDEP GVHRVWQPVD ESPGLAMSRA FGDYCIKDYG LVSVPEVTQR HISIRDQFII LATDGVWDVI
301: SNQEAIDIVS STAERAKAAK RLVQQAVRAW NRKRRGIAMD DISAVCLFFH SSSSSPSL

Arabidopsis Description

Probable protein phosphatase 2C 34 [Source:UniProtKB/Swiss-Prot;Acc:Q9M9W9]
SUBAcon: [mitochondrion,peroxisome,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.