CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, peroxisome, plastid, nucleus

Predictor Summary:

nucleus 3
peroxisome 1
mitochondrion 2
plastid 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
KXG35813

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G05640.1	KXG35813	AT4G08520.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d037949_P001	Maize	mitochondrion	88.1	88.1
TraesCS1B01G242400.1	Wheat	cytosol, peroxisome, plastid	80.17	83.24
TraesCS1A01G228100.1	Wheat	mitochondrion	78.75	82.25
TraesCS1B01G242300.1	Wheat	mitochondrion	77.62	80.83
TraesCS1B01G242200.1	Wheat	mitochondrion	77.05	80.24
HORVU1Hr1G059090.7	Barley	cytosol, peroxisome, plastid	79.32	79.55
Os05t0358500-01	Rice	mitochondrion	78.47	78.47
TraesCS1D01G230000.2	Wheat	cytosol, peroxisome, plastid	78.75	75.54
HORVU1Hr1G059130.3	Barley	mitochondrion	80.17	75.07
TraesCS1D01G229600.2	Wheat	mitochondrion	77.62	74.66
TraesCS1B01G033400.1	Wheat	cytosol, peroxisome	47.59	74.01
TraesCS1D01G229700.1	Wheat	mitochondrion	77.05	73.91
TraesCS1A01G228000.1	Wheat	mitochondrion, peroxisome, plastid	77.62	73.46
GSMUA_Achr11P...	Banana	mitochondrion	66.01	68.13
GSMUA_Achr8P10330_001	Banana	mitochondrion, nucleus	64.31	64.86
TraesCS1A01G228200.1	Wheat	mitochondrion	69.69	63.9
TraesCS7B01G361000.1	Wheat	mitochondrion, peroxisome, plastid	60.06	60.57
KRG96758	Soybean	cytosol, mitochondrion, peroxisome	63.17	60.43
Bra040530.1-P	Field mustard	cytosol, nucleus, peroxisome	59.21	60.06
CDY18810	Canola	cytosol, nucleus, peroxisome	59.21	60.06
KRH68473	Soybean	cytosol, mitochondrion, peroxisome	62.89	59.84
AT3G05640.1	Thale cress	cytosol, mitochondrion, peroxisome	60.34	59.5
VIT_14s0060g02070.t01	Wine grape	mitochondrion	61.47	59.29
PGSC0003DMT400063747	Potato	cytosol, mitochondrion, peroxisome	61.47	59.13
Solyc01g100040.2.1	Tomato	cytosol, mitochondrion, peroxisome	61.19	58.86
KRH33864	Soybean	nucleus	60.62	58.15
KRG92929	Soybean	nucleus	60.34	58.04
CDY05554	Canola	nucleus	59.21	56.79
Bra036606.1-P	Field mustard	nucleus	59.77	56.57
CDY19742	Canola	nucleus	59.49	56.3
AT5G27930.1	Thale cress	nucleus	59.21	56.03
CDY53338	Canola	cytosol, mitochondrion, nucleus	58.92	55.76
Bra020569.1-P	Field mustard	nucleus	59.21	55.73
CDY25013	Canola	nucleus	58.92	55.47
HORVU1Hr1G059140.2	Barley	mitochondrion, plastid	41.08	54.51
AT3G16800.2	Thale cress	nucleus	53.54	53.85
CDY67911	Canola	nucleus	53.26	53.56
CDY50503	Canola	nucleus	53.26	53.56
Bra021202.1-P	Field mustard	nucleus	52.97	53.28
KRH50799	Soybean	cytosol	54.96	52.86
Solyc01g065700.2.1	Tomato	nucleus	53.82	52.63
PGSC0003DMT400015950	Potato	plastid	53.26	52.51
Bra022179.1-P	Field mustard	nucleus	51.84	52.14
KRH02293	Soybean	cytosol	55.52	52.13
VIT_05s0077g01820.t01	Wine grape	cytosol, mitochondrion, peroxisome, plastid	59.21	51.99
CDX95903	Canola	nucleus	51.56	51.85
CDX92097	Canola	nucleus	51.27	51.57
EES04776	Sorghum	cytosol, peroxisome, plastid	43.91	40.68
EER99559	Sorghum	plastid	43.06	35.27
KXG30134	Sorghum	nucleus	41.64	31.82
EES03167	Sorghum	mitochondrion	41.08	31.39
EES07864	Sorghum	cytosol, nucleus, peroxisome	39.38	29.26
EES06783	Sorghum	mitochondrion	42.21	28.54
KXG25674	Sorghum	mitochondrion	46.18	28.5
KXG22794	Sorghum	cytosol, nucleus, peroxisome	40.23	28.23
EER99809	Sorghum	plastid	25.5	19.74
EES04932	Sorghum	cytosol, plastid	24.93	8.13

Protein Annotations

KEGG:04658+3.1.3.16	KEGG:04660+3.1.3.16	MapMan:18.4.24.2.5	Gene3D:3.60.40.10	EntrezGene:8084727	UniProt:C5YWS1
EnsemblPlants:EES19385	ProteinID:EES19385	ProteinID:EES19385.1	GO:GO:0003674	GO:GO:0003824	GO:GO:0004722
GO:GO:0006464	GO:GO:0006470	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016787
GO:GO:0019538	InterPro:IPR001932	InterPro:IPR036457	PFAM:PF00481	InterPro:PP2C	InterPro:PPM-type_dom_sf
InterPro:PPM-type_phosphatase_dom	PFscan:PS51746	PANTHER:PTHR13832	PANTHER:PTHR13832:SF198	SMART:SM00332	EnsemblPlantsGene:SORBI_3009G109700
SUPFAM:SSF81606	UniParc:UPI0001A8889B	RefSeq:XP_002440955.1	SEG:seg	:	:

Description

hypothetical protein

Coordinates

chr9:-:44187459..44191281

Molecular Weight (calculated)

38325.4 Da

IEP (calculated)

7.007

GRAVY (calculated)

-0.248

Length

353 amino acids

Sequence
(BLAST)

001: MRQISSLLQG LARSLSVGRE KDRKGDGGAG GDGGKTAMPA VLRTSGTLWG EGSETFAAVC SRRGEKGINQ DCSIVWEGFG CQEDTIFCGI FDGHGPWGHY
101: VAKAVRDSLP PSLLCHWQEA LALASLIDGE KKRLSDCQLD LWKQSYVAAC AAVDDELRRS RRFDAVQSGC TALSIVKQGD LMVVANVGDS RAVLGTTSDD
201: GGGAIAAVQL TVDFKPNLPQ EKERIRRCNG QVYCLADEPG VHRVWQPNRE SPGLAMSRAF GDYCVKDYGV ISVPEVTQRR ITTGDQFVIL ATDGVWDVLS
301: NDEAVRIVAG TPDREKAAKR LVECAVHAWR RRRRGFAVDD CSAICLFFHS PSS

Best Arabidopsis Sequence Match ( AT5G27930.1 )
(BLAST)

001: MGHFSSMFNG LARSFSIKKV KNNNGNCDAK EAADEMASEA KKKELILKSS GYVNVQGSNN LASLFSKRGE KGVNQDCALV WEGFGCQEDM IFCGIFDGHG
101: PWGHYVAKQV RNSMPLSLLC NWQKILAQAT LEPELDLEGS NKKISRFDIW KQSYLKTCAT VDQELEHHRK IDSYYSGTTA LTIVRQGEVI YVANVGDSRA
201: VLAMESDEGS LVAVQLTLDF KPNLPQEKER IIGCKGRVFC LDDEPGVHRV WQPDAETPGL AMSRAFGDYC IKEYGLVSVP EVTQRHISTK DHFIILASDG
301: IWDVISNQEA IEIVSSTAER PKAAKRLVEQ AVRAWKKKRR GYSMDDMSVV CLFLHSSSSS SLSQHHHAMT ILK

Arabidopsis Description

PPC6-7Probable protein phosphatase 2C 73 [Source:UniProtKB/Swiss-Prot;Acc:Q0WRB2]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.