CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 4
mitochondrion 6

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d011195_P001	Maize	mitochondrion	87.01	81.87
Os04t0321800-02	Rice	peroxisome	62.77	63.04
TraesCS2B01G291800.1	Wheat	mitochondrion	69.05	60.3
TraesCS2D01G273100.1	Wheat	mitochondrion	69.05	60.3
TraesCS2A01G274100.1	Wheat	mitochondrion	68.83	60.23
EES06783	Sorghum	mitochondrion	65.58	58.05
EER99559	Sorghum	plastid	39.39	42.23
EES19385	Sorghum	mitochondrion, nucleus, peroxisome, plastid	31.39	41.08
KXG30134	Sorghum	nucleus	40.69	40.69
EES04776	Sorghum	cytosol, peroxisome, plastid	32.68	39.63
KXG25674	Sorghum	mitochondrion	44.81	36.19
EES07864	Sorghum	cytosol, nucleus, peroxisome	35.28	34.32
KXG22794	Sorghum	cytosol, nucleus, peroxisome	35.71	32.8
EER99809	Sorghum	plastid	21.86	22.15
EES04932	Sorghum	cytosol, plastid	21.43	9.15

Protein Annotations

KEGG:04658+3.1.3.16	KEGG:04660+3.1.3.16	MapMan:18.4.24.2.5	Gene3D:3.60.40.10	EntrezGene:8078220	UniProt:C5XPD9
EnsemblPlants:EES03167	ProteinID:EES03167	ProteinID:EES03167.1	GO:GO:0003674	GO:GO:0003824	GO:GO:0004722
GO:GO:0006464	GO:GO:0006470	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016787
GO:GO:0019538	InterPro:IPR001932	InterPro:IPR036457	PFAM:PF00481	InterPro:PP2C	InterPro:PPM-type_dom_sf
InterPro:PPM-type_phosphatase_dom	PFscan:PS51746	PANTHER:PTHR13832	PANTHER:PTHR13832:SF539	SMART:SM00332	EnsemblPlantsGene:SORBI_3003G198900
SUPFAM:SSF81606	unigene:Sbi.20505	UniParc:UPI0001A84DD1	RefSeq:XP_002458047.1	SEG:seg	:

Description

hypothetical protein

Coordinates

chr3:-:52483909..52488967

Molecular Weight (calculated)

48885.7 Da

IEP (calculated)

8.101

GRAVY (calculated)

-0.175

Length

462 amino acids

Sequence
(BLAST)

001: MVTVAAGRRA GAAGGVGGRR RSGCGGAGQA AQQNSPLQQK LLAVAVAARF AEAGPPPSTE ASGAGAGGCC VELLDCLLGA LNVSVATVTP APAQYGWAVR
101: EIRPRGEGSA EDRHADAPSG RIAGNGASAN AAASLYTMQG RKGVNQDAMV VWENFGSKDD TVFCGVFDGH GPNGHLVAKR VRDLLPVKLS ANLGKGECKE
201: ISTSNVKSGT TKRVATEHRV QDTDASTGNE ENGEYPEFFT ALRASFLKAF YVMDRDLKAH RNIDCAFSGT TAVTVIKQGQ NLIIGNLGDS RAVLGTRDEH
301: NHLVALQLTV DLKPSIPSEA ARIRQRRGRV FSLPDEPDVA RVWLPTFNSP GLAMARSFGD FCLKNYGIIS MPDVSYHRIT DKDEFVVLAT DGVWDVLSNA
401: EVVSIISSAP SQASAARFLV ESAQRAWRTR YPTSKTDDCA VVCLFLNTEA ASASSSSVTK VW

Best Arabidopsis Sequence Match ( AT5G36250.1 )
(BLAST)

001: MGSCLSSSGG GGSRRSLHGS PHVPGPGRRK RPPKRRPGSC SSSFDNTEEP LLHRIPGRMF LNGSTDTVSL FSQQGKKGPN QDAMIVWENF GSMEDTVFCG
101: VFDGHGPYGH IVAKRVRDLL PLKLGSHLES YVSPEEVLKE ISLNTDDRKI SEDLVHISAN GESRVYNKDY VKDQDMIQML IGSIVKAYRF MDKELKMQVD
201: VDCFCSGTTA VTMVKQGQHL VIGNIGDSRA VLGVRNKDNK LVPFQLTEDL KPDVPAEAER IKRCRGRIFA LRDEPGVARL WLPNHNSPGL AMARAFGDFC
301: LKDFGLISVP DVSYRRLTEK DEFVVLATDG IWDALTNEEV VKIVAKAPTR SSAGRALVEA AVRNWRWKFP TSKVDDCAVV CLFLDSEPNR LSTASFSKEK
401: HINNGVTEPE PDTASSSTPD SGTGSPELNG VNRIDTLVNL PVYVPTKE

Arabidopsis Description

Protein phosphatase 2C family protein [Source:TAIR;Acc:AT5G36250]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.