Factsheet for TraesCS1B01G242300.1

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

peroxisome 1
mitochondrion 4
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	mitochondrion
Any Predictor:	mitochondrion, peroxisome, plastid
MultiLoc:	peroxisome
Predotar:	mitochondrion
PProwler:	mitochondrion
TargetP:	mitochondrion
WoLF PSORT:	plastid
YLoc:	mitochondrion

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS5A01G168700.2
TraesCS5B01G165500.2
TraesCS5D01G173000.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G05640.1	TraesCS5A01G168700.2	AT4G08520.1	21798944
AT3G05640.1	TraesCS5B01G165500.2	AT4G08520.1	21798944
AT3G05640.1	TraesCS5D01G173000.1	AT4G08520.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS1A01G228100.1	Wheat	mitochondrion	94.1	94.38
TraesCS1B01G242200.1	Wheat	mitochondrion	93.51	93.51
TraesCS1D01G229700.1	Wheat	mitochondrion	94.69	87.23
HORVU1Hr1G059130.3	Barley	mitochondrion	92.63	83.29
TraesCS1B01G242400.1	Wheat	cytosol, peroxisome, plastid	83.19	82.94
EES19385	Sorghum	mitochondrion, nucleus, peroxisome, plastid	80.83	77.62
TraesCS1B01G033400.1	Wheat	cytosol, peroxisome	50.74	75.77
Zm00001d037949_P001	Maize	mitochondrion	78.76	75.64
Os05t0358500-01	Rice	mitochondrion	77.88	74.79
GSMUA_Achr11P...	Banana	mitochondrion	68.73	68.13
GSMUA_Achr8P10330_001	Banana	mitochondrion, nucleus	66.67	64.57
TraesCS7B01G361000.1	Wheat	mitochondrion, peroxisome, plastid	63.42	61.43
HORVU1Hr1G059140.2	Barley	mitochondrion, plastid	46.61	59.4
CDY18810	Canola	cytosol, nucleus, peroxisome	60.18	58.62
Bra040530.1-P	Field mustard	cytosol, nucleus, peroxisome	60.18	58.62
AT3G05640.1	Thale cress	cytosol, mitochondrion, peroxisome	61.36	58.1
VIT_14s0060g02070.t01	Wine grape	mitochondrion	62.54	57.92
Solyc01g100040.2.1	Tomato	cytosol, mitochondrion, peroxisome	62.54	57.77
PGSC0003DMT400063747	Potato	cytosol, mitochondrion, peroxisome	62.24	57.49
KRH68473	Soybean	cytosol, mitochondrion, peroxisome	62.83	57.41
KRG96758	Soybean	cytosol, mitochondrion, peroxisome	62.24	57.18
KRG92929	Soybean	nucleus	61.36	56.68
KRH33864	Soybean	nucleus	61.36	56.52
Bra036606.1-P	Field mustard	nucleus	61.36	55.76
CDY19742	Canola	nucleus	60.77	55.23
CDY05554	Canola	nucleus	59.88	55.16
CDY53338	Canola	cytosol, mitochondrion, nucleus	60.47	54.96
AT5G27930.1	Thale cress	nucleus	59.88	54.42
CDY25013	Canola	nucleus	60.18	54.4
Bra020569.1-P	Field mustard	nucleus	59.88	54.13
PGSC0003DMT400015950	Potato	plastid	54.87	51.96
Solyc01g065700.2.1	Tomato	nucleus	54.87	51.52
AT3G16800.2	Thale cress	nucleus	52.51	50.71
KRH50799	Soybean	cytosol	54.87	50.68
KRH02293	Soybean	cytosol	55.46	50.0
Bra021202.1-P	Field mustard	nucleus	51.62	49.86
CDY50503	Canola	nucleus	51.62	49.86
CDY67911	Canola	nucleus	51.62	49.86
VIT_05s0077g01820.t01	Wine grape	cytosol, mitochondrion, peroxisome, plastid	58.7	49.5
Bra022179.1-P	Field mustard	nucleus	49.56	47.86
CDX92097	Canola	nucleus	49.26	47.58
CDX95903	Canola	nucleus	49.26	47.58
TraesCS6B01G216900.1	Wheat	nucleus, peroxisome, plastid	42.18	40.06
TraesCS2B01G229000.1	Wheat	cytosol, peroxisome, plastid	43.66	34.34
TraesCS4B01G162100.1	Wheat	cytosol, mitochondrion, peroxisome	43.95	34.02
TraesCS5B01G149300.1	Wheat	cytosol	42.48	33.72
TraesCS7B01G137400.2	Wheat	plastid	47.2	27.83
TraesCS6B01G229600.1	Wheat	mitochondrion	42.18	27.61
TraesCS2B01G291800.1	Wheat	mitochondrion	41.89	26.84
TraesCS2B01G166100.3	Wheat	cytosol	28.61	20.77
TraesCS6B01G231400.1	Wheat	plastid	27.14	8.47

Protein Annotations

KEGG:04658+3.1.3.16	KEGG:04660+3.1.3.16	MapMan:18.4.24.2.5	Gene3D:3.60.40.10	GO:GO:0003674	GO:GO:0003824
GO:GO:0004722	GO:GO:0006464	GO:GO:0006470	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987
GO:GO:0016787	GO:GO:0019538	InterPro:IPR001932	InterPro:IPR036457	PFAM:PF00481	InterPro:PP2C
InterPro:PPM-type_dom_sf	InterPro:PPM-type_phosphatase_dom	PFscan:PS51746	PANTHER:PTHR13832	PANTHER:PTHR13832:SF198	SMART:SM00332
SUPFAM:SSF81606	EnsemblPlantsGene:TraesCS1B01G242300	EnsemblPlants:TraesCS1B01G242300.1	TIGR:cd00143	:	:

Description

No Description!

Coordinates

chr1B:-:429899328..429901930

Molecular Weight (calculated)

37195.2 Da

IEP (calculated)

7.878

GRAVY (calculated)

-0.325

Length

339 amino acids

Sequence
(BLAST)

001: MRQLSSLLQG LARSMAGKER KEEDPQGTVL RTSGTLRGEG SGTLAAVWSR RGEKGTNQDC SVVWEGFGCQ EDTIFCGIFD GHGQWGHYVS KAVRDSLPPS
101: LLCRWQEAVT LASLVDGEKK LGHCQFDLWK QSYLAAAAAV DEELRRSRRL DAVNSGSTAL SVVKKGDTMV IANVGDSRAV LGTTSDDGSI AAIQLTVDFK
201: PNLLQEKARI LQCKGRVHCH EDEPGVHRVW LPDREAPGLA MSRAFGDYCV KDYGVISAPE VTQRRITARD QFVILATDGV WDVVSNGEAV QIVADTPERE
301: KAAKRLVQCA VRAWRRKRRG YAVDDCSAIC LFLHHSPPS

Best Arabidopsis Sequence Match ( AT3G05640.3 )
(BLAST)

001: MGHFSSMFNG IARSFSIKKA KNINSSKSYA KEATDEMARE AKKKELILRS SGCINADGSN NLASVFSRRG EKGVNQDCAI VWEGYGCQED MIFCGIFDGH
101: GPWGHFVSKQ VRNSMPISLL CNWKETLSQT TIAEPDKELQ RFAIWKYSFL KTCEAVDLEL EHHRKIDSFN SGTTALTIVR QGDVIYIANV GDSRAVLATV
201: SDEGSLVAVQ LTVDFKPNLP QEEERIIGCN GRVFCLQDEP GVHRVWQPVD ESPGLAMSRA FGDYCIKDYG LVSVPEVTQR HISIRDQFII LATDGVWDVI
301: SNQEAIDIVS STAERAKAAK RLVQQAVRAW NRKRRGIAMD DISAVCLFFH SSSSSPSL

Arabidopsis Description

Probable protein phosphatase 2C 34 [Source:UniProtKB/Swiss-Prot;Acc:Q9M9W9]
SUBAcon: [mitochondrion,peroxisome,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.