Subcellular Localization
min:
: max
Winner_takes_all: mitochondrion
Predictor Summary:
Predictor Summary:
- peroxisome 1
- mitochondrion 4
- plastid 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| TraesCS5A01G168700.2 | |
| TraesCS5B01G165500.2 | |
| TraesCS5D01G173000.1 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT3G05640.1 | TraesCS5A01G168700.2 | AT4G08520.1 | 21798944 |
| AT3G05640.1 | TraesCS5B01G165500.2 | AT4G08520.1 | 21798944 |
| AT3G05640.1 | TraesCS5D01G173000.1 | AT4G08520.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS1B01G242300.1 | Wheat | mitochondrion | 94.38 | 94.1 |
| TraesCS1D01G229700.1 | Wheat | mitochondrion | 95.27 | 87.5 |
| TraesCS1A01G228000.1 | Wheat | mitochondrion, peroxisome, plastid | 92.9 | 84.18 |
| HORVU1Hr1G059130.3 | Barley | mitochondrion | 93.2 | 83.55 |
| EES19385 | Sorghum | mitochondrion, nucleus, peroxisome, plastid | 82.25 | 78.75 |
| Zm00001d037949_P001 | Maize | mitochondrion | 80.47 | 77.05 |
| Os05t0358500-01 | Rice | mitochondrion | 78.7 | 75.35 |
| GSMUA_Achr11P... | Banana | mitochondrion | 69.23 | 68.42 |
| TraesCS1A01G228200.1 | Wheat | mitochondrion | 75.74 | 66.49 |
| GSMUA_Achr8P10330_001 | Banana | mitochondrion, nucleus | 67.16 | 64.86 |
| HORVU1Hr1G059140.2 | Barley | mitochondrion, plastid | 48.22 | 61.28 |
| VIT_14s0060g02070.t01 | Wine grape | mitochondrion | 63.61 | 58.74 |
| AT3G05640.1 | Thale cress | cytosol, mitochondrion, peroxisome | 61.83 | 58.38 |
| PGSC0003DMT400063747 | Potato | cytosol, mitochondrion, peroxisome | 63.31 | 58.31 |
| Solyc01g100040.2.1 | Tomato | cytosol, mitochondrion, peroxisome | 63.31 | 58.31 |
| KRG96758 | Soybean | cytosol, mitochondrion, peroxisome | 63.61 | 58.27 |
| CDY18810 | Canola | cytosol, nucleus, peroxisome | 59.76 | 58.05 |
| Bra040530.1-P | Field mustard | cytosol, nucleus, peroxisome | 59.76 | 58.05 |
| KRH68473 | Soybean | cytosol, mitochondrion, peroxisome | 63.31 | 57.68 |
| KRH33864 | Soybean | nucleus | 62.13 | 57.07 |
| KRG92929 | Soybean | nucleus | 61.54 | 56.68 |
| Bra036606.1-P | Field mustard | nucleus | 61.54 | 55.76 |
| AT5G27930.1 | Thale cress | nucleus | 61.24 | 55.5 |
| CDY05554 | Canola | nucleus | 60.35 | 55.43 |
| CDY19742 | Canola | nucleus | 60.95 | 55.23 |
| CDY53338 | Canola | cytosol, mitochondrion, nucleus | 60.65 | 54.96 |
| Bra020569.1-P | Field mustard | nucleus | 60.35 | 54.4 |
| CDY25013 | Canola | nucleus | 60.06 | 54.13 |
| PGSC0003DMT400015950 | Potato | plastid | 56.21 | 53.07 |
| Solyc01g065700.2.1 | Tomato | nucleus | 56.21 | 52.63 |
| AT3G16800.2 | Thale cress | nucleus | 52.96 | 51.0 |
| VIT_05s0077g01820.t01 | Wine grape | cytosol, mitochondrion, peroxisome, plastid | 60.65 | 50.99 |
| CDY67911 | Canola | nucleus | 52.66 | 50.71 |
| CDY50503 | Canola | nucleus | 52.66 | 50.71 |
| Bra021202.1-P | Field mustard | nucleus | 52.66 | 50.71 |
| KRH50799 | Soybean | cytosol | 55.03 | 50.68 |
| KRH02293 | Soybean | cytosol | 55.62 | 50.0 |
| Bra022179.1-P | Field mustard | nucleus | 50.89 | 49.0 |
| CDX92097 | Canola | nucleus | 50.59 | 48.72 |
| CDX95903 | Canola | nucleus | 50.59 | 48.72 |
| TraesCS6A01G187700.1 | Wheat | cytosol, nucleus, peroxisome | 43.49 | 40.72 |
| TraesCS2A01G201900.1 | Wheat | cytosol, peroxisome, plastid | 44.08 | 34.81 |
| TraesCS5A01G150700.1 | Wheat | cytosol | 43.2 | 34.19 |
| TraesCS7A01G241800.1 | Wheat | nucleus | 47.34 | 30.53 |
| TraesCS6A01G193100.1 | Wheat | mitochondrion | 43.2 | 28.19 |
| TraesCS2A01G274100.1 | Wheat | mitochondrion | 42.31 | 27.08 |
| TraesCS2A01G141100.2 | Wheat | cytosol | 28.4 | 20.47 |
| TraesCS6A01G191000.1 | Wheat | plastid | 27.81 | 8.66 |
Protein Annotations
| KEGG:04658+3.1.3.16 | KEGG:04660+3.1.3.16 | MapMan:18.4.24.2.5 | Gene3D:3.60.40.10 | GO:GO:0003674 | GO:GO:0003824 |
| GO:GO:0004722 | GO:GO:0006464 | GO:GO:0006470 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009987 |
| GO:GO:0016787 | GO:GO:0019538 | InterPro:IPR001932 | InterPro:IPR036457 | PFAM:PF00481 | InterPro:PP2C |
| InterPro:PPM-type_dom_sf | InterPro:PPM-type_phosphatase_dom | PFscan:PS51746 | PANTHER:PTHR13832 | PANTHER:PTHR13832:SF198 | SMART:SM00332 |
| SUPFAM:SSF81606 | EnsemblPlantsGene:TraesCS1A01G228100 | EnsemblPlants:TraesCS1A01G228100.1 | TIGR:cd00143 | : | : |
Description
No Description!
Coordinates
chr1A:-:399243176..399245922
Molecular Weight (calculated)
37180.0 Da
IEP (calculated)
7.105
GRAVY (calculated)
-0.372
Length
338 amino acids
Sequence
(BLAST)
(BLAST)
001: MRQLSSLLQG LARSMAGKER KEDDPQGTVL RSSGTLRGEG SETLAAVWSR RGEKGTNQDC SLVWEGFGCQ DDTIFCGIFD GHGQWGHYVS KAVRDSLPPS
101: LLRHWQEAVA LASLIDGEKK LGDCQFDLWR QSYLAAAAAV DEELRRSRRL DAVNSGSTAL SIVKKGDTMV IANVGDSRAV LGTTSDDGSI AAVQLTVDFK
201: PNLPQEKARI VQCKGRVHCH DDEPGVHRVW LPDREAPGLA MSRAFGDYCV KDYGVISAPE VTQRRITSRD QFVILATDGV WDVVSNEEAV QIVADTPERE
301: KAAKRLVQCA VRAWRRKRRG YAVDDCSAIC LFLHPPPS
101: LLRHWQEAVA LASLIDGEKK LGDCQFDLWR QSYLAAAAAV DEELRRSRRL DAVNSGSTAL SIVKKGDTMV IANVGDSRAV LGTTSDDGSI AAVQLTVDFK
201: PNLPQEKARI VQCKGRVHCH DDEPGVHRVW LPDREAPGLA MSRAFGDYCV KDYGVISAPE VTQRRITSRD QFVILATDGV WDVVSNEEAV QIVADTPERE
301: KAAKRLVQCA VRAWRRKRRG YAVDDCSAIC LFLHPPPS
001: MGHFSSMFNG LARSFSIKKV KNNNGNCDAK EAADEMASEA KKKELILKSS GYVNVQGSNN LASLFSKRGE KGVNQDCALV WEGFGCQEDM IFCGIFDGHG
101: PWGHYVAKQV RNSMPLSLLC NWQKILAQAT LEPELDLEGS NKKISRFDIW KQSYLKTCAT VDQELEHHRK IDSYYSGTTA LTIVRQGEVI YVANVGDSRA
201: VLAMESDEGS LVAVQLTLDF KPNLPQEKER IIGCKGRVFC LDDEPGVHRV WQPDAETPGL AMSRAFGDYC IKEYGLVSVP EVTQRHISTK DHFIILASDG
301: IWDVISNQEA IEIVSSTAER PKAAKRLVEQ AVRAWKKKRR GYSMDDMSVV CLFLHSSSSS SLSQHHHAMT ILK
101: PWGHYVAKQV RNSMPLSLLC NWQKILAQAT LEPELDLEGS NKKISRFDIW KQSYLKTCAT VDQELEHHRK IDSYYSGTTA LTIVRQGEVI YVANVGDSRA
201: VLAMESDEGS LVAVQLTLDF KPNLPQEKER IIGCKGRVFC LDDEPGVHRV WQPDAETPGL AMSRAFGDYC IKEYGLVSVP EVTQRHISTK DHFIILASDG
301: IWDVISNQEA IEIVSSTAER PKAAKRLVEQ AVRAWKKKRR GYSMDDMSVV CLFLHSSSSS SLSQHHHAMT ILK
Arabidopsis Description
PPC6-7Probable protein phosphatase 2C 73 [Source:UniProtKB/Swiss-Prot;Acc:Q0WRB2]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.