CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, peroxisome, cytosol

Predictor Summary:

nucleus 2
mitochondrion 3
peroxisome 1
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
KRH23291
KRH44115
KRH47095

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G05640.1	KRH23291	AT4G08520.1	21798944
AT3G05640.1	KRH44115	AT4G08520.1	21798944
AT3G05640.1	KRH47095	AT4G08520.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH68473	Soybean	cytosol, mitochondrion, peroxisome	96.75	96.23
KRH33864	Soybean	nucleus	81.3	81.52
KRG92929	Soybean	nucleus	81.03	81.47
VIT_14s0060g02070.t01	Wine grape	mitochondrion	78.05	78.69
Bra040530.1-P	Field mustard	cytosol, nucleus, peroxisome	71.54	75.86
CDY18810	Canola	cytosol, nucleus, peroxisome	71.54	75.86
AT3G05640.1	Thale cress	cytosol, mitochondrion, peroxisome	71.27	73.46
Solyc01g100040.2.1	Tomato	cytosol, mitochondrion, peroxisome	72.9	73.3
PGSC0003DMT400063747	Potato	cytosol, mitochondrion, peroxisome	72.63	73.02
GSMUA_Achr11P...	Banana	mitochondrion	67.48	72.81
GSMUA_Achr8P10330_001	Banana	mitochondrion, nucleus	67.21	70.86
CDY05554	Canola	nucleus	70.46	70.65
AT5G27930.1	Thale cress	nucleus	71.27	70.51
Bra020569.1-P	Field mustard	nucleus	71.54	70.4
Bra036606.1-P	Field mustard	nucleus	71.0	70.24
CDY19742	Canola	nucleus	70.73	69.97
CDY25013	Canola	nucleus	70.73	69.6
CDY53338	Canola	cytosol, mitochondrion, nucleus	69.92	69.17
TraesCS1B01G242400.1	Wheat	cytosol, peroxisome, plastid	59.62	64.71
KRH50799	Soybean	cytosol	63.41	63.76
TraesCS1A01G228100.1	Wheat	mitochondrion	58.27	63.61
TraesCS1B01G242200.1	Wheat	mitochondrion	58.27	63.42
EES19385	Sorghum	mitochondrion, nucleus, peroxisome, plastid	60.43	63.17
HORVU1Hr1G059090.7	Barley	cytosol, peroxisome, plastid	60.16	63.07
KRH02293	Soybean	cytosol	63.69	62.5
Zm00001d037949_P001	Maize	mitochondrion	59.62	62.32
TraesCS1B01G242300.1	Wheat	mitochondrion	57.18	62.24
TraesCS1B01G033400.1	Wheat	cytosol, peroxisome	36.86	59.91
Os05t0358500-01	Rice	mitochondrion	57.18	59.77
TraesCS1D01G230000.2	Wheat	cytosol, peroxisome, plastid	58.27	58.42
HORVU1Hr1G059130.3	Barley	mitochondrion	59.35	58.09
TraesCS1D01G229600.2	Wheat	mitochondrion	57.18	57.49
TraesCS1D01G229700.1	Wheat	mitochondrion	57.18	57.34
TraesCS1A01G228000.1	Wheat	mitochondrion, peroxisome, plastid	57.18	56.57
TraesCS1A01G228200.1	Wheat	mitochondrion	49.59	47.53
TraesCS7B01G361000.1	Wheat	mitochondrion, peroxisome, plastid	43.09	45.43
HORVU1Hr1G059140.2	Barley	mitochondrion, plastid	32.52	45.11
KRH36356	Soybean	cytosol	24.93	44.23
KRH65540	Soybean	cytosol	24.39	43.9
KRG93121	Soybean	plastid	42.82	43.29
KRH45221	Soybean	cytosol, mitochondrion, peroxisome	19.78	42.69
KRH52174	Soybean	cytoskeleton, cytosol, peroxisome	39.3	42.27
KRH76051	Soybean	cytoskeleton, cytosol, peroxisome	32.79	41.72
KRH05503	Soybean	cytoskeleton, cytosol, peroxisome	37.94	40.7
KRH45219	Soybean	vacuole	10.3	40.0
KRH65533	Soybean	cytosol	21.95	38.39
KRH01535	Soybean	cytosol	44.17	35.82
KRH15511	Soybean	cytosol, nucleus, peroxisome	23.04	35.71
KRH65575	Soybean	cytosol	10.57	35.45
KRH00931	Soybean	plastid	46.61	35.32
KRH40292	Soybean	plastid	46.61	35.17
KRH65545	Soybean	cytosol, peroxisome, plastid	21.14	35.14
KRH00350	Soybean	cytosol, peroxisome, plastid	40.11	34.91
KRH40835	Soybean	nucleus, peroxisome, plastid	40.65	34.56
KRH26917	Soybean	cytosol, plastid	40.11	31.22
KRH56012	Soybean	nucleus	39.3	30.79
KRH22416	Soybean	nucleus, plastid	39.57	30.74
KRH25524	Soybean	nucleus	39.02	30.57
KRH45222	Soybean	nucleus	15.99	25.43
KRH11326	Soybean	cytosol, mitochondrion, nucleus, plastid	25.75	22.04
KRH20951	Soybean	plastid	25.47	21.81
KRH02158	Soybean	cytosol	24.12	21.39
KRH50972	Soybean	cytosol	24.39	21.28
KRH39350	Soybean	cytosol	26.29	9.02
KRH76332	Soybean	cytosol	25.75	8.67

Protein Annotations

KEGG:04658+3.1.3.16	KEGG:04660+3.1.3.16	EntrezGene:100808955	MapMan:18.4.24.2.5	Gene3D:3.60.40.10	EMBL:ACUP02012162
EnsemblPlantsGene:GLYMA_19G230600	GO:GO:0003674	GO:GO:0003824	GO:GO:0004722	GO:GO:0006464	GO:GO:0006470
GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016787	GO:GO:0019538	UniProt:I1NBU1
InterPro:IPR001932	InterPro:IPR036457	ProteinID:KRG96756.1	ProteinID:KRG96757.1	EnsemblPlants:KRG96758	ProteinID:KRG96758
ProteinID:KRG96758.1	PFAM:PF00481	InterPro:PP2C	InterPro:PPM-type_dom_sf	InterPro:PPM-type_phosphatase_dom	PFscan:PS51746
PANTHER:PTHR13832	PANTHER:PTHR13832:SF514	SMART:SM00332	SUPFAM:SSF81606	UniParc:UPI000233E777	SEG:seg

Description

hypothetical protein

Coordinates

chr19:-:48139689..48143671

Molecular Weight (calculated)

40814.6 Da

IEP (calculated)

6.502

GRAVY (calculated)

-0.243

Length

369 amino acids

Sequence
(BLAST)

001: MGHFSSMFNG LARSFSMKKG GKNGKCGGRE TADAMAKEAK KNDMMLCSSG IVHVDGSNNF ASVFSKRGQK GVNQDCCIVW EEFGCQEDMI FCGIFDGHGP
101: WGHFVAKRVR ESMPPSLLCN WQETLAQTSI DQAIDVEEEK SKQYRFNIWK HSYLKTCAAI DQELEQYRKI DSFYSGTTAL SIVRQGELIV IANVGDSRAV
201: LATTSDDGSL VPVQLTIDFK PNLPQEAERI IQCQGRVFCL EDEPGVHRVW LPDEESPGLA MSRAFGDYCI KGHGLISVPE VTHRNISSRD QFVVLATDGV
301: WDVISNKEAV DIVSSTADKA KAAKRLVECA VHAWKRKRQG IAVDDISAIC LFFHSSLSTE QVSQVATLK

Best Arabidopsis Sequence Match ( AT5G27930.1 )
(BLAST)

001: MGHFSSMFNG LARSFSIKKV KNNNGNCDAK EAADEMASEA KKKELILKSS GYVNVQGSNN LASLFSKRGE KGVNQDCALV WEGFGCQEDM IFCGIFDGHG
101: PWGHYVAKQV RNSMPLSLLC NWQKILAQAT LEPELDLEGS NKKISRFDIW KQSYLKTCAT VDQELEHHRK IDSYYSGTTA LTIVRQGEVI YVANVGDSRA
201: VLAMESDEGS LVAVQLTLDF KPNLPQEKER IIGCKGRVFC LDDEPGVHRV WQPDAETPGL AMSRAFGDYC IKEYGLVSVP EVTQRHISTK DHFIILASDG
301: IWDVISNQEA IEIVSSTAER PKAAKRLVEQ AVRAWKKKRR GYSMDDMSVV CLFLHSSSSS SLSQHHHAMT ILK

Arabidopsis Description

PPC6-7Probable protein phosphatase 2C 73 [Source:UniProtKB/Swiss-Prot;Acc:Q0WRB2]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.