CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
plastid 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH25524	Soybean	nucleus	96.82	96.82
KRH22416	Soybean	nucleus, plastid	85.77	85.05
KRH26917	Soybean	cytosol, plastid	85.56	85.02
VIT_12s0059g01820.t01	Wine grape	plastid	83.44	83.09
PGSC0003DMT400047180	Potato	plastid	78.77	78.6
Solyc07g054300.2.1	Tomato	plastid	78.56	78.39
CDY48559	Canola	plastid	72.4	77.5
CDY21964	Canola	plastid	72.19	77.45
PGSC0003DMT400055813	Potato	plastid	75.58	75.74
Bra034206.1-P	Field mustard	plastid	74.31	75.27
AT4G03415.2	Thale cress	plastid	74.31	74.79
Solyc10g008490.2.1	Tomato	plastid	74.31	74.63
CDY69821	Canola	plastid	61.57	73.79
CDX89881	Canola	plastid	66.24	73.41
Bra033411.1-P	Field mustard	mitochondrion	65.39	72.81
AT1G03590.1	Thale cress	cytosol, nucleus, peroxisome, plastid	70.7	72.08
CDY15466	Canola	cytosol, peroxisome, plastid	64.33	71.46
CDY51389	Canola	cytosol, peroxisome, plastid	64.12	71.39
Bra030536.1-P	Field mustard	cytosol, peroxisome, plastid	67.09	70.69
EER99559	Sorghum	plastid	57.11	62.41
Zm00001d021817_P001	Maize	plastid	56.9	62.18
Os07t0566200-01	Rice	plasma membrane	56.26	62.06
Zm00001d006614_P001	Maize	plastid	56.9	62.04
TraesCS2D01G214200.1	Wheat	cytosol, peroxisome, plastid	56.26	61.48
TraesCS2A01G201900.1	Wheat	cytosol, peroxisome, plastid	55.84	61.45
HORVU2Hr1G039710.1	Barley	cytosol, peroxisome, plastid	56.05	61.25
TraesCS2B01G229000.1	Wheat	cytosol, peroxisome, plastid	55.84	61.02
GSMUA_Achr9P24510_001	Banana	plastid	53.72	60.24
HORVU2Hr1G084080.1	Barley	cytosol, plastid	18.9	57.05
KRH45221	Soybean	cytosol, mitochondrion, peroxisome	20.17	55.56
KRH36356	Soybean	cytosol	22.51	50.96
KRG93121	Soybean	plastid	38.64	49.86
KRH45219	Soybean	vacuole	9.77	48.42
KRH40292	Soybean	plastid	50.11	48.26
KRH00931	Soybean	plastid	49.89	48.25
KRH76051	Soybean	cytoskeleton, cytosol, peroxisome	29.3	47.59
KRH65540	Soybean	cytosol	20.17	46.34
KRH01535	Soybean	cytosol	43.74	45.27
KRH52174	Soybean	cytoskeleton, cytosol, peroxisome	32.06	44.02
KRH05503	Soybean	cytoskeleton, cytosol, peroxisome	31.63	43.31
KRH40835	Soybean	nucleus, peroxisome, plastid	39.49	42.86
KRH65533	Soybean	cytosol	19.11	42.65
KRH00350	Soybean	cytosol, peroxisome, plastid	37.79	41.98
KRH65575	Soybean	cytosol	9.77	41.82
KRH33864	Soybean	nucleus	31.85	40.76
KRG92929	Soybean	nucleus	31.63	40.6
KRH65545	Soybean	cytosol, peroxisome, plastid	18.68	39.64
KRH68473	Soybean	cytosol, mitochondrion, peroxisome	31.21	39.62
KRG96758	Soybean	cytosol, mitochondrion, peroxisome	30.79	39.3
KRH50799	Soybean	cytosol	29.94	38.42
KRH02293	Soybean	cytosol	30.15	37.77
KRH15511	Soybean	cytosol, nucleus, peroxisome	18.47	36.55
KRH45222	Soybean	nucleus	15.92	32.33
KRH02158	Soybean	cytosol	21.23	24.04
KRH11326	Soybean	cytosol, mitochondrion, nucleus, plastid	21.66	23.67
KRH20951	Soybean	plastid	21.66	23.67
KRH50972	Soybean	cytosol	20.38	22.7
KRH39350	Soybean	cytosol	26.33	11.53
KRH76332	Soybean	cytosol	25.48	10.95

Protein Annotations

KEGG:04658+3.1.3.16	KEGG:04660+3.1.3.16	EntrezGene:100813306	MapMan:18.4.24.2.5	Gene3D:3.60.40.10	EMBL:ACUP02004079
EnsemblPlantsGene:GLYMA_06G296200	GO:GO:0003674	GO:GO:0003824	GO:GO:0004722	GO:GO:0006464	GO:GO:0006470
GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016787	GO:GO:0019538	UniProt:I1KF44
InterPro:IPR001932	InterPro:IPR036457	ProteinID:KRH56011.1	EnsemblPlants:KRH56012	ProteinID:KRH56012	ProteinID:KRH56012.1
ProteinID:KRH56013.1	PFAM:PF00481	InterPro:PP2C	InterPro:PPM-type_dom_sf	InterPro:PPM-type_phosphatase_dom	PFscan:PS51746
PANTHER:PTHR13832	PANTHER:PTHR13832:SF193	SMART:SM00332	SUPFAM:SSF81606	UniParc:UPI000233A5F7	SEG:seg

Description

hypothetical protein

Coordinates

chr6:+:48521145..48526897

Molecular Weight (calculated)

51862.7 Da

IEP (calculated)

5.513

GRAVY (calculated)

-0.504

Length

471 amino acids

Sequence
(BLAST)

001: MGSCISTSSR STCSSKSNGD MVSPSCLEIG CCGQKRTRRT FSDHVISLHH LPSLPSRIFS NGKSRGSCIF TQQGRKGINQ DAMIVWEDFM SEDTIFCGVF
101: DGHGPHGHLV ARKVRDALPI KLISSLHSNE SKRNGSGKTC FKGNVKPDSG ESEKDCSAED KLNSTWREAF MKAYKAMDKE LRSHPNLDCF CSGSTAVTIV
201: KQGSNLFMGY IGDSRAIMGS KDSNDSMVAI QLTVDLKPDL PREAERIKKC RGRVFALQDE PEVPRVWLPF DDAPGLAMAR AFGDFCLKEY GVISIPEFSH
301: RQLTDRDQFI VLASDGVWDV LSNEEVVEIV SSAPTRSSAA RILVDSAARE WKHKYPTSKM DDCAVVCLFL DGKMDSESDY EEQGFSSATI QSNHSGNPIE
401: SDDGQKSEPS LQRNFTVRSS EENETNGALS VDVVEDATSS ADDQNWSGLE GVTRVNSLVQ LPRFSEERPK S

Best Arabidopsis Sequence Match ( AT4G03415.2 )
(BLAST)

001: MGGCVSTSSK STCSSWSNGE KPVRRPYLGI GCCVSKRAKR TFSDHIVSLQ NLTSIPNRIT SSSKSRSSCI FTQQGRKGIN QDAMIVWEDF MSEDVTFCGV
101: FDGHGPYGHL VARKVRDTLP VKLQFFFQTL QSKQNCSKGT RFRRNSSKSA VQEAVKEGSD EDKLKGLWGE AFLKSFKAMD KELRSHPNLD CFCSGSTGVT
201: ILKQGSNLFM GNIGDSRAIL GSKDSNDSMV ATQLTVDLKP DLPREAERIK RCKGRVFAME DEPEVPRVWL PYDDAPGLAM ARAFGDFCLK EYGVISVPEF
301: THRVLTDRDQ FIVLASDGVW DVLSNEEVVD IVASATSRAS AARTLVNSAA REWKLKYPTS KMDDCAVVCL FLDGKMDSES DYDEQGFSSA TNAVESDDGQ
401: RSEPCLQRNF TVRSSSDQEN ETYGNVNTET DAEDEKTVGD QNWLGLQGVT RVNSLVQLPR FSEEKSKT

Arabidopsis Description

PP2C52 [Source:UniProtKB/TrEMBL;Acc:A0A178UVG7]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.