CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

nucleus 1
plastid 3
mitochondrion 2
peroxisome 1
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX89881	Canola	plastid	93.13	86.12
Bra033411.1-P	Field mustard	mitochondrion	90.33	83.92
CDY51389	Canola	cytosol, peroxisome, plastid	86.26	80.14
CDY15466	Canola	cytosol, peroxisome, plastid	83.72	77.59
AT1G03590.1	Thale cress	cytosol, nucleus, peroxisome, plastid	85.24	72.51
CDY48559	Canola	plastid	74.81	66.82
CDY21964	Canola	plastid	74.3	66.51
KRH25524	Soybean	nucleus	74.3	62.0
KRH56012	Soybean	nucleus	73.79	61.57
VIT_12s0059g01820.t01	Wine grape	plastid	74.05	61.52
KRH22416	Soybean	nucleus, plastid	73.79	61.05
PGSC0003DMT400047180	Potato	plastid	72.77	60.59
KRH26917	Soybean	cytosol, plastid	73.03	60.55
Solyc07g054300.2.1	Tomato	plastid	71.5	59.53
PGSC0003DMT400055813	Potato	plastid	70.48	58.94
CDY72270	Canola	cytosol	31.3	58.29
Solyc10g008490.2.1	Tomato	plastid	69.47	58.21
EER99559	Sorghum	plastid	55.98	51.04
Zm00001d006614_P001	Maize	plastid	55.98	50.93
Os07t0566200-01	Rice	plasma membrane	55.22	50.82
TraesCS2D01G214200.1	Wheat	cytosol, peroxisome, plastid	55.47	50.58
TraesCS2A01G201900.1	Wheat	cytosol, peroxisome, plastid	54.96	50.47
HORVU2Hr1G039710.1	Barley	cytosol, peroxisome, plastid	55.22	50.35
Zm00001d021817_P001	Maize	plastid	55.22	50.35
CDX91383	Canola	cytosol	40.97	50.31
TraesCS2B01G229000.1	Wheat	cytosol, peroxisome, plastid	54.96	50.12
GSMUA_Achr9P24510_001	Banana	plastid	52.93	49.52
CDY46975	Canola	cytosol, mitochondrion, peroxisome	38.68	48.87
CDY40298	Canola	cytosol, peroxisome, plastid	42.24	45.98
CDY70364	Canola	cytosol, peroxisome	41.98	45.58
CDY00978	Canola	cytosol	40.2	45.01
CDY53743	Canola	plastid	51.4	43.16
CDY53741	Canola	plastid	51.15	43.04
CDY37649	Canola	mitochondrion, plastid	47.07	43.02
CDY63003	Canola	mitochondrion, plastid	47.58	42.69
CDY56581	Canola	cytosol	36.9	42.65
CDX80553	Canola	cytosol	36.39	42.31
CDX92009	Canola	plastid	50.89	42.28
CDX72381	Canola	cytosol	34.86	42.02
CDX88210	Canola	cytosol	35.62	41.42
CDY45023	Canola	cytosol	34.35	41.41
CDY28276	Canola	cytosol	34.35	41.41
CDY33350	Canola	cytosol, nucleus, plastid	49.87	40.83
CDY18810	Canola	cytosol, nucleus, peroxisome	36.13	40.8
CDY13509	Canola	cytosol	33.84	40.8
CDX74239	Canola	plastid	50.38	40.74
CDY35072	Canola	cytosol, peroxisome, plastid	49.87	40.66
CDX88554	Canola	nucleus	49.36	40.59
CDX97493	Canola	cytosol	34.1	40.36
CDY53338	Canola	cytosol, mitochondrion, nucleus	37.66	39.68
CDY19742	Canola	nucleus	37.4	39.41
CDY05554	Canola	nucleus	36.9	39.4
CDX87369	Canola	nucleus	48.6	38.82
CDY62635	Canola	cytosol, mitochondrion, peroxisome, plastid	37.66	38.44
CDY25013	Canola	nucleus	36.64	38.4
CDY28706	Canola	cytosol, peroxisome, plastid	50.38	37.36
CDY51537	Canola	cytosol, peroxisome, plastid	50.64	37.34
CDY67911	Canola	nucleus	33.33	37.32
CDY50503	Canola	nucleus	33.33	37.32
CDX95903	Canola	nucleus	33.08	37.04
CDX92097	Canola	nucleus	32.82	36.75
CDY34568	Canola	cytosol	12.72	35.71
HORVU2Hr1G084080.1	Barley	cytosol, plastid	13.74	34.62
CDX74112	Canola	plastid	22.9	25.42
CDY08060	Canola	plastid	22.65	25.14
CDY18847	Canola	cytosol	20.61	24.85
CDX82702	Canola	nucleus	18.58	16.22
CDY05716	Canola	cytosol	28.24	10.31
CDY35922	Canola	cytosol	28.24	10.27

Protein Annotations

KEGG:04658+3.1.3.16	KEGG:04660+3.1.3.16	MapMan:18.4.24.2.5	Gene3D:3.60.40.10	GO:A0A078JWF6	UniProt:A0A078JWF6
EnsemblPlants:CDY69821	ProteinID:CDY69821	ProteinID:CDY69821.1	ncoils:Coil	GO:GO:0003674	GO:GO:0003824
GO:GO:0004722	GO:GO:0006464	GO:GO:0006470	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987
GO:GO:0016787	GO:GO:0019538	EnsemblPlantsGene:GSBRNA2T00092798001	InterPro:IPR001932	InterPro:IPR036457	PFAM:PF00481
InterPro:PP2C	InterPro:PPM-type_dom_sf	InterPro:PPM-type_phosphatase_dom	PFscan:PS51746	PANTHER:PTHR13832	PANTHER:PTHR13832:SF193
SMART:SM00332	SUPFAM:SSF81606	UniParc:UPI0004EE4019	SEG:seg	:	:

Description

BnaCnng65520DBnaCnng65520D protein (Fragment) [Source:UniProtKB/TrEMBL;Acc:A0A078JWF6]

Coordinates

chrLK040432:-:1..2753

Molecular Weight (calculated)

43489.2 Da

IEP (calculated)

4.690

GRAVY (calculated)

-0.427

Length

393 amino acids

Sequence
(BLAST)

001: MGGCVSKSNE EPMYRPCLGM GCCGSKMGRR TSSGRIVSLN NLVSIPNRIT SNGKSKSSCI FTQQGRKGVN QDSMIVWEDF MSKDVTFCGV FDGHGPHGHL
101: VSRKVRESLP VRILSFLQSK PSKSDSQEAD KEEEEEEASE EDKLKLLWEE AFLKAFSAMD KELRSHPNVE CFCSGSTAVT VIKQGSNLFM GNIGDSRAIL
201: GSKDSNDSLV ATQLTVDLKP DLPREAERIK QCKGRVFALE DEPEVPRVWL PYDNAPGLAM ARAFGDFCLK DYGVISVPEF SHRVLTDRDQ FIVLASDGVW
301: DVLSNEEVVE VVASAPRRAS AARLVVDAAA REWKLKYPTS KMDDCAVVCL FLDEKMDSDP SDYEEQGYYS SATNAVEESD ESQVNAEPCL QRN

Best Arabidopsis Sequence Match ( AT1G03590.1 )
(BLAST)

001: MGGCISKTSW SNEEPMHRPC LGMGCCGSKM GKRGFSDRMV SLHNLVSIPN RIIGNGKSRS SCIFTQQGRK GINQDAMIVW EDFMSKDVTF CGVFDGHGPH
101: GHLVARKVRD SLPVKLLSLL NSIKSKQNGP IGTRASKSDS LEAEKEESTE EDKLNFLWEE AFLKSFNAMD KELRSHPNLE CFCSGCTAVT IIKQGSNLYM
201: GNIGDSRAIL GSKDSNDSMI AVQLTVDLKP DLPREAERIK QCKGRVFALQ DEPEVSRVWL PFDNAPGLAM ARAFGDFCLK DYGVISIPEF SHRVLTDRDQ
301: FIVLASDGVW DVLSNEEVVE VVASATSRAS AARLVVDSAV REWKLKYPTS KMDDCAVVCL FLDGRMDSET SDNEEQCFSS ATNAVESDES QGAEPCLQRN
401: VTVRSLSTDQ ENNSYGKVIA EADNAEKEKT REGEQNWSGL EGVTRVNSLV QLPRFPGEEP KT

Arabidopsis Description

PPC6-6Probable protein phosphatase 2C 1 [Source:UniProtKB/Swiss-Prot;Acc:Q9LR65]
SUBAcon: [peroxisome,plastid,nucleus,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.