CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, plastid

Predictor Summary:

plastid 3
mitochondrion 4
nucleus 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY72270	Canola	cytosol	47.44	96.68
Bra035360.1-P	Field mustard	plastid	96.98	95.21
CDY63003	Canola	mitochondrion, plastid	96.74	94.98
CDX91383	Canola	cytosol	69.77	93.75
CDY70364	Canola	cytosol, peroxisome	78.84	93.65
CDY00978	Canola	cytosol	74.65	91.45
CDY46975	Canola	cytosol, mitochondrion, peroxisome	65.12	90.03
CDY34568	Canola	cytosol	27.67	85.0
CDX97493	Canola	cytosol	65.35	84.64
AT5G36250.2	Thale cress	plastid	88.6	82.47
CDY56581	Canola	cytosol	63.26	80.0
KRH45221	Soybean	cytosol, mitochondrion, peroxisome	22.79	57.31
CDY53743	Canola	plastid	59.77	54.91
CDY53741	Canola	plastid	59.3	54.6
CDX92009	Canola	plastid	57.91	52.64
KRG93121	Soybean	plastid	44.19	52.05
CDX74239	Canola	plastid	57.21	50.62
KRH36356	Soybean	cytosol	23.26	48.08
CDY51537	Canola	cytosol, peroxisome, plastid	59.07	47.65
CDY28706	Canola	cytosol, peroxisome, plastid	58.6	47.55
KRH01535	Soybean	cytosol	50.23	47.47
CDY69821	Canola	plastid	43.02	47.07
CDY40298	Canola	cytosol, peroxisome, plastid	38.84	46.26
CDX89881	Canola	plastid	43.26	43.76
CDY15466	Canola	cytosol, peroxisome, plastid	43.02	43.63
CDY21964	Canola	plastid	44.42	43.51
CDY48559	Canola	plastid	44.42	43.41
CDY51389	Canola	cytosol, peroxisome, plastid	42.56	43.26
CDY33350	Canola	cytosol, nucleus, plastid	47.91	42.92
CDX88554	Canola	nucleus	47.67	42.89
CDY35072	Canola	cytosol, peroxisome, plastid	47.91	42.74
CDY50503	Canola	nucleus	34.65	42.45
CDY67911	Canola	nucleus	34.65	42.45
CDY18810	Canola	cytosol, nucleus, peroxisome	33.72	41.67
CDX87369	Canola	nucleus	47.67	41.67
CDY28276	Canola	cytosol	31.4	41.41
CDX80553	Canola	cytosol	32.33	41.12
CDY45023	Canola	cytosol	31.16	41.1
CDX72381	Canola	cytosol	31.16	41.1
CDY05554	Canola	nucleus	35.12	41.03
CDX88210	Canola	cytosol	32.09	40.83
CDY13509	Canola	cytosol	30.93	40.8
CDY53338	Canola	cytosol, mitochondrion, nucleus	35.35	40.75
CDX95903	Canola	nucleus	33.26	40.74
CDY19742	Canola	nucleus	35.12	40.48
CDY25013	Canola	nucleus	34.88	40.0
CDX92097	Canola	nucleus	32.56	39.89
CDY62635	Canola	cytosol, mitochondrion, peroxisome, plastid	35.58	39.74
KRH45222	Soybean	nucleus	19.3	35.78
CDY08060	Canola	plastid	19.53	23.73
CDX74112	Canola	plastid	19.53	23.73
CDY18847	Canola	cytosol	17.67	23.31
CDX82702	Canola	nucleus	19.07	18.22
CDY05716	Canola	cytosol	23.95	9.56
CDY35922	Canola	cytosol	23.95	9.53

Protein Annotations

KEGG:04658+3.1.3.16	KEGG:04660+3.1.3.16	MapMan:18.4.24.2.5	Gene3D:3.60.40.10	GO:A0A078HK34	UniProt:A0A078HK34
EnsemblPlants:CDY37649	ProteinID:CDY37649	ProteinID:CDY37649.1	GO:GO:0003674	GO:GO:0003824	GO:GO:0004722
GO:GO:0006464	GO:GO:0006470	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016787
GO:GO:0019538	EnsemblPlantsGene:GSBRNA2T00064528001	InterPro:IPR001932	InterPro:IPR036457	PFAM:PF00481	InterPro:PP2C
InterPro:PPM-type_dom_sf	InterPro:PPM-type_phosphatase_dom	PFscan:PS51746	PANTHER:PTHR13832	PANTHER:PTHR13832:SF510	SMART:SM00332
SUPFAM:SSF81606	UniParc:UPI0004EBB356	SEG:seg	:	:	:

Description

BnaC04g29910DBnaC04g29910D protein [Source:UniProtKB/TrEMBL;Acc:A0A078HK34]

Coordinates

chrLK032405:+:201719..204424

Molecular Weight (calculated)

47394.3 Da

IEP (calculated)

7.017

GRAVY (calculated)

-0.342

Length

430 amino acids

Sequence
(BLAST)

001: MGSCLSSSGE TRSRRRKSSS KRRSCSSSFD NTGEDEPLLH RIPGRMFLNG STDHASLFSQ QGKKGPNQDA MIVWENFGSM ADTVFCGVFD GHGPYGHVIA
101: KRVRDLLPLK LGSHLESSYV SCEEVLKEIS LNTADRKTSE SLVHISANGE SRIYNKDQDM VQTLLTSIVK AYRFMDKELK MQVDVDCFCS GTTALTMVKQ
201: GQHLVVGNIG DSRAVLGTRN KENKLVPFQL TEDLKPDVPA EAARIKRCRG RIFALRDEPG VARLWLPNHN SPGLAMARAF GDFCLKDFGL ISVPDVSYRR
301: LTEKDEFLVL ATDGIWDVLT NEEVVEIVAK APTRCTAGRA LVEAAVRNWR WKFPTSKVDD CAVVCLFLDS KPDNLSTASF SVDKHISNGL TEPDTASTST
401: PGSGTESPEL NGVDRIDTLV NLTMHVPTKE

Best Arabidopsis Sequence Match ( AT5G36250.1 )
(BLAST)

001: MGSCLSSSGG GGSRRSLHGS PHVPGPGRRK RPPKRRPGSC SSSFDNTEEP LLHRIPGRMF LNGSTDTVSL FSQQGKKGPN QDAMIVWENF GSMEDTVFCG
101: VFDGHGPYGH IVAKRVRDLL PLKLGSHLES YVSPEEVLKE ISLNTDDRKI SEDLVHISAN GESRVYNKDY VKDQDMIQML IGSIVKAYRF MDKELKMQVD
201: VDCFCSGTTA VTMVKQGQHL VIGNIGDSRA VLGVRNKDNK LVPFQLTEDL KPDVPAEAER IKRCRGRIFA LRDEPGVARL WLPNHNSPGL AMARAFGDFC
301: LKDFGLISVP DVSYRRLTEK DEFVVLATDG IWDALTNEEV VKIVAKAPTR SSAGRALVEA AVRNWRWKFP TSKVDDCAVV CLFLDSEPNR LSTASFSKEK
401: HINNGVTEPE PDTASSSTPD SGTGSPELNG VNRIDTLVNL PVYVPTKE

Arabidopsis Description

Protein phosphatase 2C family protein [Source:TAIR;Acc:AT5G36250]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.