Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra035131.1-P | Field mustard | nucleus | 93.31 | 91.58 |
| CDX87369 | Canola | nucleus | 93.72 | 91.06 |
| AT1G79630.1 | Thale cress | nucleus | 88.08 | 83.53 |
| CDY33350 | Canola | cytosol, nucleus, plastid | 73.01 | 72.71 |
| CDY35072 | Canola | cytosol, peroxisome, plastid | 72.8 | 72.2 |
| CDY72270 | Canola | cytosol | 28.03 | 63.51 |
| GSMUA_Achr4P01590_001 | Banana | cytosol, peroxisome, plastid | 46.03 | 62.86 |
| GSMUA_Achr3P04090_001 | Banana | plastid | 54.39 | 57.02 |
| GSMUA_Achr6P17190_001 | Banana | endoplasmic reticulum, vacuole | 16.74 | 55.56 |
| VIT_19s0015g01920.t01 | Wine grape | mitochondrion, nucleus, peroxisome | 59.0 | 55.19 |
| GSMUA_Achr5P22360_001 | Banana | plastid | 53.56 | 54.7 |
| PGSC0003DMT400056929 | Potato | cytosol, nucleus, peroxisome | 57.95 | 53.79 |
| CDY46975 | Canola | cytosol, mitochondrion, peroxisome | 34.73 | 53.38 |
| Solyc07g066260.2.1 | Tomato | cytosol, nucleus, peroxisome | 57.32 | 53.2 |
| CDX91383 | Canola | cytosol | 35.15 | 52.5 |
| Zm00001d052852_P001 | Maize | plastid | 56.28 | 51.43 |
| Os08t0500300-01 | Rice | plasma membrane | 56.49 | 50.85 |
| CDY53741 | Canola | plastid | 49.58 | 50.75 |
| HORVU7Hr1G049260.4 | Barley | nucleus | 55.23 | 50.67 |
| TraesCS7A01G241800.1 | Wheat | nucleus | 55.44 | 50.57 |
| CDY70364 | Canola | cytosol, peroxisome | 38.28 | 50.55 |
| PGSC0003DMT400029340 | Potato | cytosol, nucleus, peroxisome | 58.37 | 50.54 |
| CDY53743 | Canola | plastid | 49.37 | 50.43 |
| Solyc10g005640.2.1 | Tomato | nucleus | 57.95 | 49.82 |
| CDX89881 | Canola | plastid | 44.14 | 49.65 |
| CDY69821 | Canola | plastid | 40.59 | 49.36 |
| CDY15466 | Canola | cytosol, peroxisome, plastid | 43.72 | 49.29 |
| CDY00978 | Canola | cytosol | 36.19 | 49.29 |
| Zm00001d031329_P002 | Maize | nucleus | 56.07 | 49.17 |
| CDX92009 | Canola | plastid | 48.33 | 48.84 |
| CDY21964 | Canola | plastid | 44.77 | 48.75 |
| CDY48559 | Canola | plastid | 44.77 | 48.64 |
| CDX74239 | Canola | plastid | 48.54 | 47.74 |
| CDY37649 | Canola | mitochondrion, plastid | 42.89 | 47.67 |
| CDY51389 | Canola | cytosol, peroxisome, plastid | 42.05 | 47.52 |
| CDY63003 | Canola | mitochondrion, plastid | 43.1 | 47.03 |
| KXG25674 | Sorghum | mitochondrion | 56.07 | 46.85 |
| CDY56581 | Canola | cytosol | 32.85 | 46.18 |
| TraesCS7D01G240800.1 | Wheat | mitochondrion | 55.44 | 46.09 |
| TraesCS7B01G137400.2 | Wheat | plastid | 55.44 | 46.09 |
| CDY40298 | Canola | cytosol, peroxisome, plastid | 33.68 | 44.6 |
| CDY28706 | Canola | cytosol, peroxisome, plastid | 48.95 | 44.15 |
| CDY51537 | Canola | cytosol, peroxisome, plastid | 49.16 | 44.09 |
| CDY18810 | Canola | cytosol, nucleus, peroxisome | 31.59 | 43.39 |
| CDX97493 | Canola | cytosol | 29.92 | 43.07 |
| CDX80553 | Canola | cytosol | 29.08 | 41.12 |
| CDX95903 | Canola | nucleus | 30.13 | 41.03 |
| CDY67911 | Canola | nucleus | 30.13 | 41.03 |
| CDY50503 | Canola | nucleus | 30.13 | 41.03 |
| CDY53338 | Canola | cytosol, mitochondrion, nucleus | 32.01 | 41.02 |
| CDX88210 | Canola | cytosol | 28.87 | 40.83 |
| CDY05554 | Canola | nucleus | 31.38 | 40.76 |
| CDY19742 | Canola | nucleus | 31.8 | 40.75 |
| CDX92097 | Canola | nucleus | 29.71 | 40.46 |
| CDY28276 | Canola | cytosol | 27.41 | 40.18 |
| CDX72381 | Canola | cytosol | 27.2 | 39.88 |
| CDY45023 | Canola | cytosol | 26.99 | 39.57 |
| CDY25013 | Canola | nucleus | 30.96 | 39.47 |
| CDY13509 | Canola | cytosol | 26.78 | 39.26 |
| CDY62635 | Canola | cytosol, mitochondrion, peroxisome, plastid | 30.54 | 37.92 |
| Zm00001d008472_P001 | Maize | cytosol | 12.13 | 37.42 |
| CDY34568 | Canola | cytosol | 10.88 | 37.14 |
| CDX74112 | Canola | plastid | 17.15 | 23.16 |
| CDY08060 | Canola | plastid | 16.74 | 22.6 |
| CDY18847 | Canola | cytosol | 14.85 | 21.78 |
| CDX82702 | Canola | nucleus | 15.27 | 16.22 |
| CDY35922 | Canola | cytosol | 25.73 | 11.38 |
| CDY05716 | Canola | cytosol | 25.52 | 11.33 |
Protein Annotations
| KEGG:04658+3.1.3.16 | KEGG:04660+3.1.3.16 | MapMan:18.4.24.2.5 | Gene3D:3.60.40.10 | GO:A0A078DJ36 | EnsemblPlants:CDX88554 |
| ProteinID:CDX88554 | ProteinID:CDX88554.1 | GO:GO:0003674 | GO:GO:0003824 | GO:GO:0004722 | GO:GO:0006464 |
| GO:GO:0006470 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009987 | GO:GO:0016787 | GO:GO:0019538 |
| EnsemblPlantsGene:GSBRNA2T00148116001 | InterPro:IPR001932 | InterPro:IPR036457 | PFAM:PF00481 | InterPro:PP2C | InterPro:PPM-type_dom_sf |
| InterPro:PPM-type_phosphatase_dom | PFscan:PS51746 | PANTHER:PTHR13832 | PANTHER:PTHR13832:SF383 | SMART:SM00332 | SUPFAM:SSF81606 |
| UniParc:UPI0004EE7850 | SEG:seg | : | : | : | : |
Description
BnaC06g39980D
Coordinates
chrLK031855:-:1620849..1622980
Molecular Weight (calculated)
52658.1 Da
IEP (calculated)
4.559
GRAVY (calculated)
-0.379
Length
478 amino acids
Sequence
(BLAST)
(BLAST)
001: MGLCHSVDRT TGKEPGETSS TAELADDRSG SGRWRRPRDL KGGGEVEGVQ EVSGRLISNG SSEIACLYTQ QGKKGTNQDA MLVFENFCSR DDTVFCGVFD
101: GHGPFGHMVA KKVRDTLPST LSTQLKLTSE SEQNSLVNEK GVQIKCTEEE EAVTTTMDEQ CDEQLLPEMY LPLKHALLKS CQQIDKDLKM HPTIDCFCSG
201: TTSVTLIKQG EDLVVGNIGD SRAVLATRDQ DNALVAVQLT VDLKPDLPSE SARIQKCKGR VFALQDEPEV ARVWLPNSDS PGLAMARAFG DFCLKDYGLI
301: SVPDINYRRL TERDQFIVLA SDGVWDVLSN KEAVDIIASA PSRSTAARAL VDTAVRSWRI KYPTSKNDDC TVVCLFLQDS SYVVKDSHKE DSVESVSLSN
401: KEEEEEGEIV QVKEESIPKS CGVESKMMTT MTLAECISVA QDDEEWSALE GLTRVNSLLS IPRFLSGELR SASWRKWL
101: GHGPFGHMVA KKVRDTLPST LSTQLKLTSE SEQNSLVNEK GVQIKCTEEE EAVTTTMDEQ CDEQLLPEMY LPLKHALLKS CQQIDKDLKM HPTIDCFCSG
201: TTSVTLIKQG EDLVVGNIGD SRAVLATRDQ DNALVAVQLT VDLKPDLPSE SARIQKCKGR VFALQDEPEV ARVWLPNSDS PGLAMARAFG DFCLKDYGLI
301: SVPDINYRRL TERDQFIVLA SDGVWDVLSN KEAVDIIASA PSRSTAARAL VDTAVRSWRI KYPTSKNDDC TVVCLFLQDS SYVVKDSHKE DSVESVSLSN
401: KEEEEEGEIV QVKEESIPKS CGVESKMMTT MTLAECISVA QDDEEWSALE GLTRVNSLLS IPRFLSGELR SASWRKWL
001: MGLCYSVDRT TGKEPGEASS TATTAETVEE RSGSGRWRRP RDLKGGGDIE GIPQVLGRLV SNGSSKIACL YTQQGKKGTN QDAMLVFENF CSRDDTVFCG
101: VFDGHGPFGH MVAKKVRDTL PFTLLTQLKM TSESDQSSLV GANGFQIKCT EEEEVQTTES EQVQKTESVT TMDEQWCELN PNVNNDELPE MYLPLKHAML
201: KSCQQIDKEL KMHPTIDCFC SGTTSVTLIK QGEDLVVGNI GDSRAVLATR DEDNALLAVQ LTIDLKPDLP GESARIQKCK GRVFALQDEP EVARVWLPNS
301: DSPGLAMARA FGDFCLKDYG LISVPDINYR RLTERDQFII LASDGVWDVL SNKEAVDIVA SAPSRSTAAR ALVDTAVRSW RIKYPTSKND DCTVVCLFLQ
401: DSSVAMEVST NVKKDSPKEE SIESVTNSTS KEEDEIVPVK DEKIPESCGI ESKMMTMTLA ECISVAQDDE EWSALEGLTR VNSLLSIPRF LSGELRSTSW
501: RKWL
101: VFDGHGPFGH MVAKKVRDTL PFTLLTQLKM TSESDQSSLV GANGFQIKCT EEEEVQTTES EQVQKTESVT TMDEQWCELN PNVNNDELPE MYLPLKHAML
201: KSCQQIDKEL KMHPTIDCFC SGTTSVTLIK QGEDLVVGNI GDSRAVLATR DEDNALLAVQ LTIDLKPDLP GESARIQKCK GRVFALQDEP EVARVWLPNS
301: DSPGLAMARA FGDFCLKDYG LISVPDINYR RLTERDQFII LASDGVWDVL SNKEAVDIVA SAPSRSTAAR ALVDTAVRSW RIKYPTSKND DCTVVCLFLQ
401: DSSVAMEVST NVKKDSPKEE SIESVTNSTS KEEDEIVPVK DEKIPESCGI ESKMMTMTLA ECISVAQDDE EWSALEGLTR VNSLLSIPRF LSGELRSTSW
501: RKWL
Arabidopsis Description
Probable protein phosphatase 2C 18 [Source:UniProtKB/Swiss-Prot;Acc:Q8RXZ4]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.