Factsheet for VIT_19s0015g01920.t01

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, peroxisome, nucleus

Predictor Summary:

nucleus 3
peroxisome 1
mitochondrion 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr4P01590_001	Banana	cytosol, peroxisome, plastid	48.53	70.86
GSMUA_Achr3P04090_001	Banana	plastid	61.25	68.64
GSMUA_Achr5P22360_001	Banana	plastid	57.53	62.82
Zm00001d052852_P001	Maize	plastid	62.82	61.38
CDY33350	Canola	cytosol, nucleus, plastid	56.75	60.42
Os08t0500300-01	Rice	plasma membrane	62.62	60.26
PGSC0003DMT400056929	Potato	cytosol, nucleus, peroxisome	60.47	60.0
CDY35072	Canola	cytosol, peroxisome, plastid	56.56	59.96
TraesCS7A01G241800.1	Wheat	nucleus	61.45	59.92
HORVU7Hr1G049260.4	Barley	nucleus	61.06	59.88
Bra026075.1-P	Field mustard	cytosol, peroxisome, plastid	56.36	59.75
Solyc07g066260.2.1	Tomato	cytosol, nucleus, peroxisome	60.08	59.61
Zm00001d031329_P002	Maize	nucleus	63.41	59.45
AT1G16220.1	Thale cress	nucleus	56.95	59.27
GSMUA_Achr6P17190_001	Banana	endoplasmic reticulum, vacuole	16.63	59.03
CDX88554	Canola	nucleus	55.19	59.0
Bra035131.1-P	Field mustard	nucleus	55.77	58.52
AT1G79630.1	Thale cress	nucleus	57.14	57.94
CDX87369	Canola	nucleus	55.58	57.72
KXG25674	Sorghum	mitochondrion	63.99	57.17
VIT_04s0023g00690.t01	Wine grape	plastid	54.21	57.0
TraesCS7B01G137400.2	Wheat	plastid	61.64	54.78
TraesCS7D01G240800.1	Wheat	mitochondrion	61.64	54.78
PGSC0003DMT400029340	Potato	cytosol, nucleus, peroxisome	59.1	54.71
Solyc10g005640.2.1	Tomato	nucleus	58.32	53.6
VIT_08s0058g00660.t01	Wine grape	cytosol	37.57	48.73
VIT_04s0008g00740.t01	Wine grape	cytosol	32.49	47.56
VIT_12s0059g01820.t01	Wine grape	plastid	43.84	47.36
VIT_14s0060g02070.t01	Wine grape	mitochondrion	32.68	45.63
Zm00001d008472_P001	Maize	cytosol	12.13	40.0
VIT_05s0077g01820.t01	Wine grape	cytosol, mitochondrion, peroxisome, plastid	30.53	38.81
VIT_05s0020g02360.t01	Wine grape	cytosol	18.4	24.16
VIT_11s0016g03430.t01	Wine grape	cytosol	22.9	10.8

Protein Annotations

KEGG:04658+3.1.3.16	KEGG:04660+3.1.3.16	EntrezGene:100266911	wikigene:100266911	MapMan:18.4.24.2.5	ProteinID:CCB62073
ProteinID:CCB62073.1	UniProt:F6I4X8	EMBL:FN596747	GO:GO:0003674	GO:GO:0003824	GO:GO:0004722
GO:GO:0006464	GO:GO:0006470	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016787
GO:GO:0019538	InterPro:IPR001932	InterPro:IPR036457	EntrezGene:LOC100266911	wikigene:LOC100266911	PFAM:PF00481
InterPro:PP2C	InterPro:PPM-type_dom_sf	InterPro:PPM-type_phosphatase_dom	PFscan:PS51746	PANTHER:PTHR13832	PANTHER:PTHR13832:SF383
SMART:SM00332	SUPFAM:SSF81606	UniParc:UPI000210AB10	ArrayExpress:VIT_19s0015g01920	EnsemblPlantsGene:VIT_19s0015g01920	EnsemblPlants:VIT_19s0015g01920.t01
unigene:Vvi.10668	RefSeq:XP_002265613	RefSeq:XP_002265613.2	RefSeq:XP_010644704.1	SEG:seg	:

Description

No Description!

Coordinates

chr19:+:10712764..10726492

Molecular Weight (calculated)

55384.1 Da

IEP (calculated)

5.018

GRAVY (calculated)

-0.354

Length

511 amino acids

Sequence
(BLAST)

001: MGACYSSIGK RYKGGGGGGG CGGGGGGGGA TTSIISYSSR NLFGGGENEL HRIPQRMFVN GASTVASLFT QQGKKGTNQD AMLVWENFSS RSDTIFCGVF
101: DGHGPYGHMV AKKVRDCLPL ILHTQWQANS NSDKKSDGKN GNAPEKTNLE ETASLNMDDE YYESLEVDDN EKVPEMYLPL KESFLKAFKL MDKELKLHPT
201: IDCFCSGTTA VTLVKQGPNL VIGNIGDSRA VLATRDVENS LTAVQLTIDL KPNLPREAAR IHQCKGRVFA LQDEPEVARV WLPNSDSPGL AMARAFGDFC
301: LKDFGLISVP DIYYRHLTER DEFIILATDG VWDVLSNKEA VDIVASAPGH TTAARALVDC AVRAWRLKYP TSKNDDCAVV CLFLEHASAV DETPTENGLT
401: KTPEAVADGM IVVDGENGGS DVDSRPSHAH VLEHSSTAEG CNEIMPLSES TEEKLSDKCR GQSKRSLAEC ISTAEDEEWS ALEGVTRVNS LLSLPRFLSS
501: DKSAANWRKW L

Best Arabidopsis Sequence Match ( AT1G16220.1 )
(BLAST)

001: MGLCHSKIDK TTRKETGATS TATTTVERQS SGRLRRPRDL YSGGEISEIQ QVVGRLVGNG SSEIACLYTQ QGKKGTNQDA MLVWENFCSR SDTVLCGVFD
101: GHGPFGHMVS KRVRDMLPFT LSTQLKTTSG TEQSSSKNGL NSAPTCVDEE QWCELQLCEK DEKLFPEMYL PLKRALLKTC QQMDKELKMH PTINCFCSGT
201: TSVTVIKQGK DLVVGNIGDS RAVLATRDQD NALVAVQLTI DLKPDLPSES ARIHRCKGRV FALQDEPEVA RVWLPNSDSP GLAMARAFGD FCLKDYGLIS
301: VPDINYHRLT ERDQYIILAT DGVWDVLSNK EAVDIVASAP SRDTAARAVV DTAVRAWRLK YPTSKNDDCA VVCLFLEDTS AGGTVEVSET VNHSHEESTE
401: SVTITSSKDA DKKEEASTET NETVPVWEIK EEKTPESCRI ESKKTTLAEC ISVKDDEEWS ALEGLTRVNS LLSIPRFFSG ELRSSSWRKW L

Arabidopsis Description

Probable protein phosphatase 2C 6 [Source:UniProtKB/Swiss-Prot;Acc:Q9SA22]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.