Factsheet for VIT_05s0020g02360.t01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 3
plastid 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus, plastid
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus, plastid
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra040228.1-P	Field mustard	cytosol, peroxisome, plastid	27.25	76.81
AT3G06270.1	Thale cress	cytosol	66.58	74.43
CDY08060	Canola	plastid	65.04	71.47
Bra001189.1-P	Field mustard	plastid	64.78	71.19
CDX74112	Canola	plastid	64.78	71.19
Bra040230.1-P	Field mustard	cytosol	59.38	70.86
CDY18847	Canola	cytosol	59.38	70.86
GSMUA_Achr5P21680_001	Banana	endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	39.33	69.86
Solyc01g080400.2.1	Tomato	cytosol	72.49	68.12
PGSC0003DMT400081764	Potato	cytosol	71.98	67.63
KRH20951	Soybean	plastid	73.26	66.13
KRH02158	Soybean	cytosol	70.69	66.11
KRH11326	Soybean	cytosol, mitochondrion, nucleus, plastid	73.01	65.89
KRH50972	Soybean	cytosol	71.21	65.48
GSMUA_Achr10P...	Banana	mitochondrion	61.7	54.55
GSMUA_Achr8P05980_001	Banana	cytosol	54.24	52.88
Os07t0646100-00	Rice	plasma membrane	49.36	51.34
GSMUA_Achr3P24900_001	Banana	cytosol	47.56	49.33
EER99809	Sorghum	plastid	50.13	42.76
TraesCS2D01G144500.3	Wheat	cytosol	50.64	42.73
TraesCS2A01G141100.2	Wheat	cytosol	51.16	42.43
Zm00001d007050_P001	Maize	mitochondrion	49.36	42.29
TraesCS2B01G166100.3	Wheat	cytosol	50.64	42.18
Zm00001d022347_P001	Maize	mitochondrion	48.33	40.69
GSMUA_Achr3P24880_001	Banana	cytosol, plastid	40.87	29.44
VIT_14s0060g02070.t01	Wine grape	mitochondrion	25.45	27.05
VIT_04s0008g00740.t01	Wine grape	cytosol	23.65	26.36
VIT_05s0077g01820.t01	Wine grape	cytosol, mitochondrion, peroxisome, plastid	23.14	22.39
VIT_08s0058g00660.t01	Wine grape	cytosol	21.34	21.07
VIT_12s0059g01820.t01	Wine grape	plastid	25.19	20.72
VIT_11s0016g03430.t01	Wine grape	cytosol	56.04	20.13
VIT_04s0023g00690.t01	Wine grape	plastid	24.94	19.96
VIT_19s0015g01920.t01	Wine grape	mitochondrion, nucleus, peroxisome	24.16	18.4

Protein Annotations

KEGG:04658+3.1.3.16	KEGG:04660+3.1.3.16	EntrezGene:100264845	wikigene:100264845	Gene3D:3.60.40.10	MapMan:35.1
EMBL:AM450267	ProteinID:CAN76569	ProteinID:CAN76569.1	ProteinID:CCB50370	ProteinID:CCB50370.1	UniProt:F6HDJ9
EMBL:FN595749	GO:GO:0003674	GO:GO:0003824	GO:GO:0004721	GO:GO:0005488	GO:GO:0006464
GO:GO:0006470	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016787	GO:GO:0019538
GO:GO:0043169	GO:GO:0046872	InterPro:IPR001932	InterPro:IPR036457	EntrezGene:LOC100264845	wikigene:LOC100264845
PFAM:PF00481	InterPro:PP2C_BS	InterPro:PPM-type_dom_sf	InterPro:PPM-type_phosphatase_dom	ScanProsite:PS01032	PFscan:PS51746
PANTHER:PTHR24353	PANTHER:PTHR24353:SF115	SMART:SM00332	SUPFAM:SSF81606	TIGR:TC66351	TIGR:TC68293
UniParc:UPI0002109896	ArrayExpress:VIT_05s0020g02360	EnsemblPlantsGene:VIT_05s0020g02360	EnsemblPlants:VIT_05s0020g02360.t01	unigene:Vvi.2091	RefSeq:XP_002278973
RefSeq:XP_002278973.1	SEG:seg	:	:	:	:

Description

No Description!

Coordinates

chr5:-:4056169..4060081

Molecular Weight (calculated)

42860.1 Da

IEP (calculated)

4.450

GRAVY (calculated)

-0.288

Length

389 amino acids

Sequence
(BLAST)

001: MGCVHGKCCS RYPPSSNGDS RDYRERGRYG GRHIISDRLL ECVAVPSHNF NLEYSVLSQR GYYPDSPDKE NQDSYIIKTE IQGNPNVHFF GVFDGHGQFG
101: AQCSNFVKDR LVEVLSNDPT LLDDPVKVYN SAFLVTNSEL HNSEIDDSMS GTTAITVLLI GNTLFVANVG DSRAVIAVKE GNRIIAEDLS YDQTPFRKDE
201: YDRVKLCGAR VLSVDQVEGL KDPDIQTWGD EETEGSDPPR LWVQNGMYPG TAFTRSVGDG TAEKIGVIAV PEVSMIELAS NHLFFVVASD GVFEFLSSQT
301: VVEMVARYPD PRDACAAIAG ESYKLWLEHE NRTDDITIII VHIRDLSDSG ANTMAILRTG RGGTPDVSIT TGSEVFHSTV SEFSDMQLC

Best Arabidopsis Sequence Match ( AT3G06270.1 )
(BLAST)

001: MGCVQCKCCS RYPSSSSDGD SRGPLEANGV LKGKDQKPLG SIHVPSPNFD MVYSVLSQRG YYPDSPDKEN QDTYCIKTEL QGNPNVHFFG VFDGHGVLGT
101: QCSNFVKERV VEMLSEDPTL LEDPEKAYKS AFLRVNEELH DSEIDDSMSG TTAITVLVVG DKIYVANVGD SRAVLAVKDR NRILAEDLSY DQTPFRKDEC
201: ERVKACGARV LSVDQVEGLK DPNIQTWANE ESEGGDPPRL WVQNGMYPGT AFTRSVGDFT AESIGVIAEP EVSMVHLSPN HLFFVVASDG IFEFLPSQAV
301: VDMVGRYADP RDGCAAAAAE SYKLWLEHEN RTDDITIIIV QIKKLSNE

Arabidopsis Description

Probable protein phosphatase 2C 35 [Source:UniProtKB/Swiss-Prot;Acc:Q7XJ53]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.