Factsheet for VIT_04s0008g00740.t01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
peroxisome 1
mitochondrion 1
cytosol 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus, peroxisome
BaCelLo:	nucleus
MultiLoc:	peroxisome
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400005637	Potato	cytosol	39.54	70.77
Solyc08g065670.2.1	Tomato	peroxisome	55.59	63.4
KRH52174	Soybean	cytoskeleton, cytosol, peroxisome	61.03	62.1
KRH05503	Soybean	cytoskeleton, cytosol, peroxisome	60.74	61.63
Solyc08g065500.1.1	Tomato	cytosol, endoplasmic reticulum, extracellular, golgi, nucleus, peroxisome, plasma membrane, vacuole	59.31	61.61
KRH15511	Soybean	cytosol, nucleus, peroxisome	40.4	59.24
GSMUA_Achr2P15710_001	Banana	cytosol, peroxisome, plastid	53.01	58.92
Solyc08g065540.2.1	Tomato	cytosol, nucleus, peroxisome	55.01	57.83
Zm00001d009234_P001	Maize	cytosol, peroxisome, plastid	13.75	57.14
AT5G26010.1	Thale cress	cytosol, nucleus, peroxisome	52.72	55.59
GSMUA_Achr7P09260_001	Banana	nucleus	51.86	54.35
Bra034542.1-P	Field mustard	cytosol	50.72	54.29
CDY45023	Canola	cytosol	50.43	53.99
AT4G32950.1	Thale cress	cytosol	50.14	53.68
CDY28276	Canola	cytosol	50.14	53.68
CDX80553	Canola	cytosol	51.86	53.55
CDX88210	Canola	cytosol	51.58	53.25
Bra009875.1-P	Field mustard	cytosol	51.58	53.25
CDX72381	Canola	cytosol	49.28	52.76
CDY13509	Canola	cytosol	49.0	52.45
Bra037033.1-P	Field mustard	cytosol	49.0	52.45
TraesCS6B01G216900.1	Wheat	nucleus, peroxisome, plastid	51.86	50.7
TraesCS6D01G178400.1	Wheat	cytosol, nucleus, peroxisome	52.15	50.7
HORVU6Hr1G039940.1	Barley	nucleus, peroxisome, plastid	50.72	50.0
TraesCS6A01G187700.1	Wheat	cytosol, nucleus, peroxisome	51.58	49.86
Solyc08g065680.1.1	Tomato	cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, peroxisome, plasma membrane, plastid, vacuole	27.51	46.83
Zm00001d016332_P001	Maize	cytosol, nucleus, peroxisome	49.86	46.15
EES04776	Sorghum	cytosol, peroxisome, plastid	49.57	45.41
Os02t0224100-01	Rice	cytosol, peroxisome, plastid	50.43	45.24
Zm00001d009620_P001	Maize	cytosol, peroxisome, plastid	19.77	43.4
VIT_14s0060g02070.t01	Wine grape	mitochondrion	40.69	38.8
Zm00001d053566_P002	Maize	nucleus, peroxisome, plastid	50.43	38.77
VIT_04s0023g00690.t01	Wine grape	plastid	50.14	36.01
VIT_08s0058g00660.t01	Wine grape	cytosol	40.11	35.53
VIT_05s0077g01820.t01	Wine grape	cytosol, mitochondrion, peroxisome, plastid	40.11	34.83
VIT_12s0059g01820.t01	Wine grape	plastid	44.13	32.56
VIT_19s0015g01920.t01	Wine grape	mitochondrion, nucleus, peroxisome	47.56	32.49
VIT_05s0020g02360.t01	Wine grape	cytosol	26.36	23.65
VIT_11s0016g03430.t01	Wine grape	cytosol	27.22	8.77

Protein Annotations

KEGG:04658+3.1.3.16	KEGG:04660+3.1.3.16	EntrezGene:100266178	wikigene:100266178	MapMan:18.4.24.2.5	Gene3D:3.60.40.10
EMBL:AM477577	ProteinID:CAN66210	ProteinID:CAN66210.1	ProteinID:CCB46546	ProteinID:CCB46546.1	UniProt:F6H390
EMBL:FN595231	GO:GO:0003674	GO:GO:0003824	GO:GO:0004722	GO:GO:0006464	GO:GO:0006470
GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016787	GO:GO:0019538	InterPro:IPR001932
InterPro:IPR036457	EntrezGene:LOC100266178	wikigene:LOC100266178	PFAM:PF00481	InterPro:PP2C	InterPro:PPM-type_dom_sf
InterPro:PPM-type_phosphatase_dom	PFscan:PS51746	PANTHER:PTHR13832	PANTHER:PTHR13832:SF315	SMART:SM00332	SUPFAM:SSF81606
UniParc:UPI0001982E76	ArrayExpress:VIT_04s0008g00740	EnsemblPlantsGene:VIT_04s0008g00740	EnsemblPlants:VIT_04s0008g00740.t01	unigene:Vvi.20799	RefSeq:XP_002276954
RefSeq:XP_002276954.1	SEG:seg	:	:	:	:

Description

No Description!

Coordinates

chr4:-:660328..662075

Molecular Weight (calculated)

37937.4 Da

IEP (calculated)

6.180

GRAVY (calculated)

-0.190

Length

349 amino acids

Sequence
(BLAST)

001: MGICISTVSS EIQDSGDGHE NMVFFEDSTA SIGIQRLGSL HSQPGSKGLN QDAAILHQGY GMEDGAFCGV FDGHGKNGHI VSKIVRNHLP SLLLNQKNAL
101: LKANTAMKGE DLHTQKERRD GMVMPNKIFR KWQEACVGAF KVMDKEIKLQ EDLDCSCSGT TAVVIVKQGD DLVIANLGDS RAVLGTITEN GVTAVQLTTD
201: LKPGLPMEAD RIRKCNGRVI SLKEEPHIQR VWLPNEDSPG LAMSRAFGDF LLKNHGIIAI PDISYRRLAS NDQFLVLATD GVWDVLSNSQ VAGIVWSAES
301: EEEAAKAVVD AATAAWKHKF PSSKVDDCTV VCLFLQKRQQ VLQACNPPS

Best Arabidopsis Sequence Match ( AT5G26010.1 )
(BLAST)

001: MGHCFSLPSS QSEIHEDNEH GDGNVVCYGE EFGLDQDLPV HRLGSVCSIQ GTKVLNQDHA VLYQGYGTRD TELCGVFDGH GKNGHMVSKM VRNRLPSVLL
101: ALKEELNQES NVCEEEASKW EKACFTAFRL IDRELNLQVF NCSFSGSTGV VAITQGDDLV IANLGDSRAV LGTMTEDGEI KAVQLTSDLT PDVPSEAERI
201: RMCKGRVFAM KTEPSSQRVW LPNQNIPGLA MSRAFGDFRL KDHGVIAVPE ISQHRITSKD QFLVLATDGV WDMLSNDEVV SLIWSSGKKQ ASAAKMVAEA
301: AEAAWKKRLK YTKVDDITVI CLFLQNKEQP S

Arabidopsis Description

Probable protein phosphatase 2C 72 [Source:UniProtKB/Swiss-Prot;Acc:Q9XGZ9]
SUBAcon: [peroxisome,nucleus,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.