Factsheet for VIT_12s0059g01820.t01

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 5
mitochondrion 1
nucleus 3

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH25524	Soybean	nucleus	83.72	84.08
KRH56012	Soybean	nucleus	83.09	83.44
Solyc07g054300.2.1	Tomato	plastid	82.24	82.42
PGSC0003DMT400047180	Potato	plastid	82.24	82.42
KRH26917	Soybean	cytosol, plastid	79.92	79.75
KRH22416	Soybean	nucleus, plastid	79.49	79.16
CDY48559	Canola	plastid	73.36	78.86
CDY21964	Canola	plastid	73.15	78.82
PGSC0003DMT400055813	Potato	plastid	78.01	78.51
Solyc10g008490.2.1	Tomato	plastid	76.96	77.61
Bra034206.1-P	Field mustard	plastid	75.26	76.56
AT4G03415.2	Thale cress	plastid	74.84	75.64
CDY69821	Canola	plastid	61.52	74.05
CDX89881	Canola	plastid	66.38	73.88
Bra033411.1-P	Field mustard	mitochondrion	65.54	73.29
CDY15466	Canola	cytosol, peroxisome, plastid	64.9	72.41
AT1G03590.1	Thale cress	cytosol, nucleus, peroxisome, plastid	70.61	72.29
CDY51389	Canola	cytosol, peroxisome, plastid	64.48	72.1
Bra030536.1-P	Field mustard	cytosol, peroxisome, plastid	67.65	71.59
Os07t0566200-01	Rice	plasma membrane	55.6	61.59
EER99559	Sorghum	plastid	56.03	61.48
Zm00001d006614_P001	Maize	plastid	55.81	61.11
Zm00001d021817_P001	Maize	plastid	55.6	61.02
GSMUA_Achr9P24510_001	Banana	plastid	53.91	60.71
HORVU2Hr1G039710.1	Barley	cytosol, peroxisome, plastid	54.97	60.32
TraesCS2D01G214200.1	Wheat	cytosol, peroxisome, plastid	54.76	60.09
TraesCS2B01G229000.1	Wheat	cytosol, peroxisome, plastid	54.55	59.86
TraesCS2A01G201900.1	Wheat	cytosol, peroxisome, plastid	54.12	59.81
HORVU2Hr1G084080.1	Barley	cytosol, plastid	19.03	57.69
VIT_08s0058g00660.t01	Wine grape	cytosol	40.17	48.22
VIT_04s0023g00690.t01	Wine grape	plastid	49.05	47.74
VIT_04s0008g00740.t01	Wine grape	cytosol	32.56	44.13
VIT_19s0015g01920.t01	Wine grape	mitochondrion, nucleus, peroxisome	47.36	43.84
VIT_14s0060g02070.t01	Wine grape	mitochondrion	32.77	42.35
VIT_05s0077g01820.t01	Wine grape	cytosol, mitochondrion, peroxisome, plastid	31.92	37.56
VIT_05s0020g02360.t01	Wine grape	cytosol	20.72	25.19
VIT_11s0016g03430.t01	Wine grape	cytosol	25.58	11.17

Protein Annotations

KEGG:04658+3.1.3.16	KEGG:04660+3.1.3.16	EntrezGene:100258592	wikigene:100258592	MapMan:18.4.24.2.5	Gene3D:3.60.40.10
UniProt:A5C3B0	EMBL:AM480683	ProteinID:CAN68594	ProteinID:CAN68594.1	ProteinID:CCB52014	ProteinID:CCB52014.1
EMBL:FN595765	GO:GO:0003674	GO:GO:0003824	GO:GO:0004722	GO:GO:0006464	GO:GO:0006470
GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016787	GO:GO:0019538	InterPro:IPR001932
InterPro:IPR036457	EntrezGene:LOC100258592	wikigene:LOC100258592	PFAM:PF00481	InterPro:PP2C	InterPro:PPM-type_dom_sf
InterPro:PPM-type_phosphatase_dom	PFscan:PS51746	PANTHER:PTHR13832	PANTHER:PTHR13832:SF193	SMART:SM00332	SUPFAM:SSF81606
TIGR:TC66121	UniParc:UPI00015222DF	ArrayExpress:VIT_12s0059g01820	EnsemblPlantsGene:VIT_12s0059g01820	EnsemblPlants:VIT_12s0059g01820.t01	RefSeq:XP_002277857
RefSeq:XP_002277857.1	RefSeq:XP_010657270.1	SEG:seg	:	:	:

Description

No Description!

Coordinates

chr12:+:6692760..6696940

Molecular Weight (calculated)

52611.0 Da

IEP (calculated)

5.866

GRAVY (calculated)

-0.476

Length

473 amino acids

Sequence
(BLAST)

001: MGGCVSTSSR STCSSRGNGK RVSPSCMGIG ICRRKRTKKT FADHVNTLQH LPSIPNRIFT NGKSRASCIF TQQGRKGINQ DAMIVWEDFM SDDVTFCGVF
101: DGHGPHGHLV ARKVRDALPL KLLSFLHSYQ SRQNGSSTAC FKSDLKKLDG GDSEKDSSTE DKLDCLWREA FLKSYKAMDK ELRSHPNLDC FCSGSTAVTI
201: VRQGSNLFMG YIGDSRAILG SKDSSDSMVA IQLTVDLKPD LPREAERIKR CKGRVFALQD EPEVPRVWLP FDDAPGLAMA RAFGDFCLKE YGVISIPEFS
301: HRMLTDRDQF IVLASDGVWD VLSNEEVVEI VSSAPTRSSA ARILVDSAAR EWKLKYPTSK MDDCAVVCLF LDGKMDSESD YEEQGFSTAT LQSNHSGNAM
401: ESDDGQNSEP SLQRNFTVRS SEENDSFRRI PIEIEGHEET VMAEDQNWLG LEGVTRVNSL VQLPRFSEER PNS

Best Arabidopsis Sequence Match ( AT4G03415.2 )
(BLAST)

001: MGGCVSTSSK STCSSWSNGE KPVRRPYLGI GCCVSKRAKR TFSDHIVSLQ NLTSIPNRIT SSSKSRSSCI FTQQGRKGIN QDAMIVWEDF MSEDVTFCGV
101: FDGHGPYGHL VARKVRDTLP VKLQFFFQTL QSKQNCSKGT RFRRNSSKSA VQEAVKEGSD EDKLKGLWGE AFLKSFKAMD KELRSHPNLD CFCSGSTGVT
201: ILKQGSNLFM GNIGDSRAIL GSKDSNDSMV ATQLTVDLKP DLPREAERIK RCKGRVFAME DEPEVPRVWL PYDDAPGLAM ARAFGDFCLK EYGVISVPEF
301: THRVLTDRDQ FIVLASDGVW DVLSNEEVVD IVASATSRAS AARTLVNSAA REWKLKYPTS KMDDCAVVCL FLDGKMDSES DYDEQGFSSA TNAVESDDGQ
401: RSEPCLQRNF TVRSSSDQEN ETYGNVNTET DAEDEKTVGD QNWLGLQGVT RVNSLVQLPR FSEEKSKT

Arabidopsis Description

PP2C52 [Source:UniProtKB/TrEMBL;Acc:A0A178UVG7]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.