CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid, nucleus

Predictor Summary:

nucleus 4
plastid 4
peroxisome 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH26917	Soybean	cytosol, plastid	93.47	93.67
KRH25524	Soybean	nucleus	85.68	86.41
KRH56012	Soybean	nucleus	85.05	85.77
VIT_12s0059g01820.t01	Wine grape	plastid	79.16	79.49
CDY48559	Canola	plastid	71.79	77.5
CDY21964	Canola	plastid	71.37	77.22
PGSC0003DMT400047180	Potato	plastid	75.16	75.64
Solyc07g054300.2.1	Tomato	plastid	74.53	75.0
Bra034206.1-P	Field mustard	plastid	73.05	74.62
CDX89881	Canola	plastid	66.74	74.59
PGSC0003DMT400055813	Potato	plastid	73.26	74.04
CDY69821	Canola	plastid	61.05	73.79
Solyc10g008490.2.1	Tomato	plastid	72.63	73.56
AT4G03415.2	Thale cress	plastid	72.42	73.5
Bra033411.1-P	Field mustard	mitochondrion	65.26	73.29
CDY15466	Canola	cytosol, peroxisome, plastid	64.63	72.41
CDY51389	Canola	cytosol, peroxisome, plastid	64.42	72.34
AT1G03590.1	Thale cress	cytosol, nucleus, peroxisome, plastid	69.68	71.64
Bra030536.1-P	Field mustard	cytosol, peroxisome, plastid	66.53	70.69
Zm00001d021817_P001	Maize	plastid	56.63	62.41
EER99559	Sorghum	plastid	56.42	62.18
Os07t0566200-01	Rice	plasma membrane	55.79	62.06
Zm00001d006614_P001	Maize	plastid	56.21	61.81
TraesCS2D01G214200.1	Wheat	cytosol, peroxisome, plastid	55.16	60.79
TraesCS2A01G201900.1	Wheat	cytosol, peroxisome, plastid	54.74	60.75
GSMUA_Achr9P24510_001	Banana	plastid	53.68	60.71
HORVU2Hr1G039710.1	Barley	cytosol, peroxisome, plastid	54.95	60.56
TraesCS2B01G229000.1	Wheat	cytosol, peroxisome, plastid	54.53	60.09
HORVU2Hr1G084080.1	Barley	cytosol, plastid	18.53	56.41
KRH45221	Soybean	cytosol, mitochondrion, peroxisome	19.58	54.39
KRH36356	Soybean	cytosol	21.89	50.0
KRH45219	Soybean	vacuole	9.89	49.47
KRG93121	Soybean	plastid	37.05	48.22
KRH40292	Soybean	plastid	47.79	46.42
KRH00931	Soybean	plastid	47.58	46.41
KRH76051	Soybean	cytoskeleton, cytosol, peroxisome	28.0	45.86
KRH65540	Soybean	cytosol	19.58	45.37
KRH05503	Soybean	cytoskeleton, cytosol, peroxisome	31.79	43.9
KRH01535	Soybean	cytosol	41.89	43.74
KRH52174	Soybean	cytoskeleton, cytosol, peroxisome	31.58	43.73
KRH65533	Soybean	cytosol	18.53	41.71
KRH40835	Soybean	nucleus, peroxisome, plastid	38.11	41.71
KRH00350	Soybean	cytosol, peroxisome, plastid	36.63	41.04
KRG92929	Soybean	nucleus	31.37	40.6
KRH33864	Soybean	nucleus	31.37	40.49
KRH65575	Soybean	cytosol	9.26	40.0
KRH68473	Soybean	cytosol, mitochondrion, peroxisome	30.95	39.62
KRG96758	Soybean	cytosol, mitochondrion, peroxisome	30.74	39.57
KRH65545	Soybean	cytosol, peroxisome, plastid	18.11	38.74
KRH50799	Soybean	cytosol	29.47	38.15
KRH02293	Soybean	cytosol	29.68	37.5
KRH15511	Soybean	cytosol, nucleus, peroxisome	18.32	36.55
KRH45222	Soybean	nucleus	14.74	30.17
KRH20951	Soybean	plastid	21.47	23.67
KRH11326	Soybean	cytosol, mitochondrion, nucleus, plastid	21.26	23.43
KRH02158	Soybean	cytosol	20.42	23.32
KRH50972	Soybean	cytosol	19.79	22.22
KRH39350	Soybean	cytosol	26.32	11.63
KRH76332	Soybean	cytosol	25.26	10.95

Protein Annotations

KEGG:04658+3.1.3.16	KEGG:04660+3.1.3.16	EntrezGene:100788149	MapMan:18.4.24.2.5	Gene3D:3.60.40.10	EMBL:ACUP02008411
EnsemblPlantsGene:GLYMA_13G299300	GO:GO:0003674	GO:GO:0003824	GO:GO:0004722	GO:GO:0006464	GO:GO:0006470
GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016787	GO:GO:0019538	UniProt:I1M3V2
InterPro:IPR001932	InterPro:IPR036457	EnsemblPlants:KRH22416	ProteinID:KRH22416	ProteinID:KRH22416.1	ProteinID:KRH22417.1
ProteinID:KRH22418.1	ProteinID:KRH22419.1	ProteinID:KRH22420.1	ProteinID:KRH22421.1	ProteinID:KRH22422.1	PFAM:PF00481
InterPro:PP2C	InterPro:PPM-type_dom_sf	InterPro:PPM-type_phosphatase_dom	PFscan:PS51746	PANTHER:PTHR13832	PANTHER:PTHR13832:SF193
SMART:SM00332	SUPFAM:SSF81606	UniParc:UPI000233BDAD	SEG:seg	:	:

Description

hypothetical protein

Coordinates

chr13:+:39758271..39762979

Molecular Weight (calculated)

52156.1 Da

IEP (calculated)

5.166

GRAVY (calculated)

-0.446

Length

475 amino acids

Sequence
(BLAST)

001: MGCCVSTSSQ STCSSGSNGD TIAPTCLEIG FCGQKSARRT FSDHVVSLHQ LPSLPNRIFT NGKSRSSCIF TQQGRKGINQ DAMIVWEDFM SEDVTFCGVF
101: DGHGPHGHLV ARKVREALPL KLLSFLHSSE SGRNGSGKAC FRSNIKPESG ESEKGLSAED EENSMWREAF MKAYKAMDKV LRSHPNLDCF CSGSTAVTIV
201: KQGSNLFMGN IGDSRAIMGS KDGNDSMVAI QLTIDLKPDL PREAERIKQC KGRVFALQDE PEVHRVWLPF DDAPGLAMAR AFGDFCLKEY GVISIPEFSH
301: RLLTDKDQFI VLASDGVWDV LSNEEVVRIV SSAPTRSSAA RTLVDSAARE WKLKYPTSKM DDCAVVCLFL DGKMDSESDC DEQCSSSATI QKNHWGNPVE
401: SDDSQKPEPS LRRNFTVRSS EENETYGGGG VEEVSVGVED RTSAAEDQHW SGLEGVTRVN SLVQLPRFSE ERPNS

Best Arabidopsis Sequence Match ( AT1G03590.1 )
(BLAST)

001: MGGCISKTSW SNEEPMHRPC LGMGCCGSKM GKRGFSDRMV SLHNLVSIPN RIIGNGKSRS SCIFTQQGRK GINQDAMIVW EDFMSKDVTF CGVFDGHGPH
101: GHLVARKVRD SLPVKLLSLL NSIKSKQNGP IGTRASKSDS LEAEKEESTE EDKLNFLWEE AFLKSFNAMD KELRSHPNLE CFCSGCTAVT IIKQGSNLYM
201: GNIGDSRAIL GSKDSNDSMI AVQLTVDLKP DLPREAERIK QCKGRVFALQ DEPEVSRVWL PFDNAPGLAM ARAFGDFCLK DYGVISIPEF SHRVLTDRDQ
301: FIVLASDGVW DVLSNEEVVE VVASATSRAS AARLVVDSAV REWKLKYPTS KMDDCAVVCL FLDGRMDSET SDNEEQCFSS ATNAVESDES QGAEPCLQRN
401: VTVRSLSTDQ ENNSYGKVIA EADNAEKEKT REGEQNWSGL EGVTRVNSLV QLPRFPGEEP KT

Arabidopsis Description

PPC6-6Probable protein phosphatase 2C 1 [Source:UniProtKB/Swiss-Prot;Acc:Q9LR65]
SUBAcon: [peroxisome,plastid,nucleus,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.