Factsheet for PGSC0003DMT400055813

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 6
nucleus 3

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc10g008490.2.1	Tomato	plastid	96.17	96.38
PGSC0003DMT400047180	Potato	plastid	85.11	84.75
VIT_12s0059g01820.t01	Wine grape	plastid	78.51	78.01
KRH25524	Soybean	nucleus	75.96	75.8
KRH56012	Soybean	nucleus	75.74	75.58
KRH22416	Soybean	nucleus, plastid	74.04	73.26
KRH26917	Soybean	cytosol, plastid	73.4	72.78
CDY48559	Canola	plastid	67.66	72.27
CDY21964	Canola	plastid	67.45	72.21
CDX89881	Canola	plastid	64.47	71.29
CDY69821	Canola	plastid	58.94	70.48
Bra033411.1-P	Field mustard	mitochondrion	62.98	69.98
Bra034206.1-P	Field mustard	plastid	68.94	69.68
AT4G03415.2	Thale cress	plastid	69.36	69.66
AT1G03590.1	Thale cress	cytosol, nucleus, peroxisome, plastid	68.09	69.26
CDY15466	Canola	cytosol, peroxisome, plastid	62.34	69.1
CDY51389	Canola	cytosol, peroxisome, plastid	61.06	67.85
Bra030536.1-P	Field mustard	cytosol, peroxisome, plastid	64.04	67.34
Zm00001d006614_P001	Maize	plastid	55.96	60.88
Zm00001d021817_P001	Maize	plastid	55.74	60.79
EER99559	Sorghum	plastid	55.74	60.79
Os07t0566200-01	Rice	plasma membrane	55.11	60.66
GSMUA_Achr9P24510_001	Banana	plastid	53.62	60.0
HORVU2Hr1G039710.1	Barley	cytosol, peroxisome, plastid	53.83	58.7
TraesCS2D01G214200.1	Wheat	cytosol, peroxisome, plastid	53.83	58.7
TraesCS2A01G201900.1	Wheat	cytosol, peroxisome, plastid	53.4	58.64
TraesCS2B01G229000.1	Wheat	cytosol, peroxisome, plastid	53.62	58.47
HORVU2Hr1G084080.1	Barley	cytosol, plastid	17.87	53.85
PGSC0003DMT400005637	Potato	cytosol	21.7	52.31
PGSC0003DMT400027278	Potato	cytosol	42.55	49.02
PGSC0003DMT400060345	Potato	plastid	47.66	47.66
PGSC0003DMT400056929	Potato	cytosol, nucleus, peroxisome	47.23	43.11
PGSC0003DMT400063747	Potato	cytosol, mitochondrion, peroxisome	31.7	40.6
PGSC0003DMT400030965	Potato	nucleus	38.3	40.45
PGSC0003DMT400029340	Potato	cytosol, nucleus, peroxisome	47.02	40.04
PGSC0003DMT400028836	Potato	nucleus	38.09	39.6
PGSC0003DMT400015950	Potato	plastid	30.0	39.39
PGSC0003DMT400081764	Potato	cytosol	20.85	23.67

Protein Annotations

KEGG:04658+3.1.3.16	KEGG:04660+3.1.3.16	EntrezGene:102596312	MapMan:18.4.24.2.5	Gene3D:3.60.40.10	GO:GO:0003674
GO:GO:0003824	GO:GO:0004722	GO:GO:0006464	GO:GO:0006470	GO:GO:0008150	GO:GO:0008152
GO:GO:0009987	GO:GO:0016787	GO:GO:0019538	InterPro:IPR001932	InterPro:IPR036457	UniProt:M1BYL1
PFAM:PF00481	EnsemblPlantsGene:PGSC0003DMG400021678	PGSC:PGSC0003DMG400021678	EnsemblPlants:PGSC0003DMT400055813	InterPro:PP2C	InterPro:PPM-type_dom_sf
InterPro:PPM-type_phosphatase_dom	PFscan:PS51746	PANTHER:PTHR13832	PANTHER:PTHR13832:SF193	SMART:SM00332	SUPFAM:SSF81606
UniParc:UPI000295F3C2	RefSeq:XP_006366012.1	SEG:seg	:	:	:

Description

Protein phosphatase-2c [Source:PGSC_GENE;Acc:PGSC0003DMG400021678]

Coordinates

chr10:+:4033892..4037550

Molecular Weight (calculated)

51831.8 Da

IEP (calculated)

4.886

GRAVY (calculated)

-0.454

Length

470 amino acids

Sequence
(BLAST)

001: MGGCVSTSSS TCSSRSNGEK VSPECLGISM FSRKRSRRTF SDHVIALKHL SSIPNRIFTN GKSRTSCIYT QQGRKGINQD AMIVWEDFMA EDVTFCGVFD
101: GHGPHGHLVA RKVRDALPLK LMSFLQSVES KGNGSAADCC NENPGSEVVD PDKDQVNTDK VDTQRREAFL QSYKAMDKEL RSQPNLDCFC SGSTAITLVK
201: QGSNLYMGYI GDSRAILASK DDNDSMVAVQ LTVDLKPDLP KEAERIKQCK GRVFALQDEP EVQRVWLPFD NAPGLAMARA FGDFCVKDYG VISVPEFSHR
301: VLTERDKFIV LASDGVWDVL SNEEVVEIVS SAPTRSSAAR ILVDCAAREW KIKYPTSKMD DCAVVCLFLD GKMDLESDNE EEQCLSSAAL QSNHSGIAAE
401: SDDGHNSEPS LQRNTTVRSA EENDIYKRAV AEADQETAMT EDQKWSGLEG VTRVNSLVQL PRFSDERQGP

Best Arabidopsis Sequence Match ( AT1G03590.1 )
(BLAST)

001: MGGCISKTSW SNEEPMHRPC LGMGCCGSKM GKRGFSDRMV SLHNLVSIPN RIIGNGKSRS SCIFTQQGRK GINQDAMIVW EDFMSKDVTF CGVFDGHGPH
101: GHLVARKVRD SLPVKLLSLL NSIKSKQNGP IGTRASKSDS LEAEKEESTE EDKLNFLWEE AFLKSFNAMD KELRSHPNLE CFCSGCTAVT IIKQGSNLYM
201: GNIGDSRAIL GSKDSNDSMI AVQLTVDLKP DLPREAERIK QCKGRVFALQ DEPEVSRVWL PFDNAPGLAM ARAFGDFCLK DYGVISIPEF SHRVLTDRDQ
301: FIVLASDGVW DVLSNEEVVE VVASATSRAS AARLVVDSAV REWKLKYPTS KMDDCAVVCL FLDGRMDSET SDNEEQCFSS ATNAVESDES QGAEPCLQRN
401: VTVRSLSTDQ ENNSYGKVIA EADNAEKEKT REGEQNWSGL EGVTRVNSLV QLPRFPGEEP KT

Arabidopsis Description

PPC6-6Probable protein phosphatase 2C 1 [Source:UniProtKB/Swiss-Prot;Acc:Q9LR65]
SUBAcon: [peroxisome,plastid,nucleus,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.