Factsheet for PGSC0003DMT400056929

Subcellular Localization

min:

: max

Winner_takes_all: peroxisome, nucleus, cytosol

Predictor Summary:

nucleus 3
peroxisome 1
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc07g066260.2.1	Tomato	cytosol, nucleus, peroxisome	97.28	97.28
PGSC0003DMT400029340	Potato	cytosol, nucleus, peroxisome	74.95	69.93
GSMUA_Achr4P01590_001	Banana	cytosol, peroxisome, plastid	43.69	64.29
VIT_19s0015g01920.t01	Wine grape	mitochondrion, nucleus, peroxisome	60.0	60.47
GSMUA_Achr3P04090_001	Banana	plastid	52.43	59.21
CDX88554	Canola	nucleus	53.79	57.95
AT1G16220.1	Thale cress	nucleus	55.15	57.84
CDY33350	Canola	cytosol, nucleus, plastid	53.79	57.71
CDY35072	Canola	cytosol, peroxisome, plastid	53.79	57.47
GSMUA_Achr5P22360_001	Banana	plastid	52.04	57.27
Bra026075.1-P	Field mustard	cytosol, peroxisome, plastid	53.59	57.26
Bra035131.1-P	Field mustard	nucleus	53.98	57.08
AT1G79630.1	Thale cress	nucleus	55.15	56.35
CDX87369	Canola	nucleus	53.59	56.1
GSMUA_Achr6P17190_001	Banana	endoplasmic reticulum, vacuole	15.53	55.56
PGSC0003DMT400005637	Potato	cytosol	20.39	53.85
Zm00001d052852_P001	Maize	plastid	54.56	53.73
HORVU7Hr1G049260.4	Barley	nucleus	53.98	53.36
PGSC0003DMT400027278	Potato	cytosol	42.14	53.19
Os08t0500300-01	Rice	plasma membrane	54.76	53.11
TraesCS7A01G241800.1	Wheat	nucleus	53.79	52.86
Zm00001d031329_P002	Maize	nucleus	55.34	52.29
KXG25674	Sorghum	mitochondrion	55.15	49.65
TraesCS7B01G137400.2	Wheat	plastid	53.79	48.17
TraesCS7D01G240800.1	Wheat	mitochondrion	53.59	48.0
PGSC0003DMT400060345	Potato	plastid	43.69	47.87
PGSC0003DMT400047180	Potato	plastid	43.3	47.25
PGSC0003DMT400055813	Potato	plastid	43.11	47.23
PGSC0003DMT400063747	Potato	cytosol, mitochondrion, peroxisome	32.43	45.5
PGSC0003DMT400015950	Potato	plastid	29.13	41.9
PGSC0003DMT400030965	Potato	nucleus	35.34	40.9
Zm00001d008472_P001	Maize	cytosol	12.23	40.65
PGSC0003DMT400028836	Potato	nucleus	33.2	37.83
PGSC0003DMT400081764	Potato	cytosol	17.86	22.22

Protein Annotations

KEGG:04658+3.1.3.16	KEGG:04660+3.1.3.16	EntrezGene:102588009	MapMan:18.4.24.2.5	Gene3D:3.60.40.10	GO:GO:0003674
GO:GO:0003824	GO:GO:0004722	GO:GO:0006464	GO:GO:0006470	GO:GO:0008150	GO:GO:0008152
GO:GO:0009987	GO:GO:0016787	GO:GO:0019538	InterPro:IPR001932	InterPro:IPR036457	UniProt:M1C034
PFAM:PF00481	EnsemblPlantsGene:PGSC0003DMG400022137	PGSC:PGSC0003DMG400022137	EnsemblPlants:PGSC0003DMT400056929	InterPro:PP2C	InterPro:PPM-type_dom_sf
InterPro:PPM-type_phosphatase_dom	PFscan:PS51746	PANTHER:PTHR13832	PANTHER:PTHR13832:SF383	SMART:SM00332	SUPFAM:SSF81606
UniParc:UPI0002952BDC	RefSeq:XP_006346061.1	SEG:seg	:	:	:

Description

Protein phosphatase-2c [Source:PGSC_GENE;Acc:PGSC0003DMG400022137]

Coordinates

chr7:-:56319180..56323610

Molecular Weight (calculated)

56379.4 Da

IEP (calculated)

6.039

GRAVY (calculated)

-0.386

Length

515 amino acids

Sequence
(BLAST)

001: MGICYSSSKS KSDDGLWDGK NDSRRFDSKL KKNSYSGDFS SFLSKLSGVG GGGGEDKGLH HIPGRILGNG ASSRACLHTQ QGKKGTNQDA MIVWENFCSR
101: SDTIFCGVFD GHGPYGHMVA RKVRDTLPFL LCSEWQVKSS GDQSNTSENG NTNGGSHLDD VLDDDLIEAM EAESNEKFPE IHLPLKRSML KAFRSMDKEL
201: KLHPTIDCFC SGSTAVSLVM QGQDIIVGNV GDSRAVLATR DKDNYLMAVQ LTVDLKPNLP KEAARIHKYK GRVFALQDEP EVARVWLPNS DSPGLAMARA
301: FGDFCLKDFG LISVPDVYYH RITDRNEFVV LATDGVWDVL SNKEAVDIVA SAPSRATAAR ALVDCATRAW RLKYPTSKTD DCAVVCLFLD RVPAPDSVVT
401: ATQHDLTKAP EVEIKTIITD GNLENADRNA SHIAVREHSV TTKDASEIVP VDESIEEQLA DKGLGHSTRS LAECLSTAED QEWSALEGVT RVNSLLSLPR
501: FMSGDKKSAS RRKWL

Best Arabidopsis Sequence Match ( AT1G16220.1 )
(BLAST)

001: MGLCHSKIDK TTRKETGATS TATTTVERQS SGRLRRPRDL YSGGEISEIQ QVVGRLVGNG SSEIACLYTQ QGKKGTNQDA MLVWENFCSR SDTVLCGVFD
101: GHGPFGHMVS KRVRDMLPFT LSTQLKTTSG TEQSSSKNGL NSAPTCVDEE QWCELQLCEK DEKLFPEMYL PLKRALLKTC QQMDKELKMH PTINCFCSGT
201: TSVTVIKQGK DLVVGNIGDS RAVLATRDQD NALVAVQLTI DLKPDLPSES ARIHRCKGRV FALQDEPEVA RVWLPNSDSP GLAMARAFGD FCLKDYGLIS
301: VPDINYHRLT ERDQYIILAT DGVWDVLSNK EAVDIVASAP SRDTAARAVV DTAVRAWRLK YPTSKNDDCA VVCLFLEDTS AGGTVEVSET VNHSHEESTE
401: SVTITSSKDA DKKEEASTET NETVPVWEIK EEKTPESCRI ESKKTTLAEC ISVKDDEEWS ALEGLTRVNS LLSIPRFFSG ELRSSSWRKW L

Arabidopsis Description

Probable protein phosphatase 2C 6 [Source:UniProtKB/Swiss-Prot;Acc:Q9SA22]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.