Factsheet for PGSC0003DMT400030965

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
mitochondrion 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
iPSORT:	mitochondrion
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc10g076320.1.1	Tomato	nucleus	95.06	97.02
PGSC0003DMT400028836	Potato	nucleus	69.21	68.14
KRH65540	Soybean	cytosol	24.04	52.2
CDY40298	Canola	cytosol, peroxisome, plastid	42.25	52.08
KRH76051	Soybean	cytoskeleton, cytosol, peroxisome	33.93	52.07
PGSC0003DMT400005637	Potato	cytosol	22.7	51.79
Bra009643.1-P	Field mustard	cytosol, peroxisome, plastid	41.8	51.52
VIT_08s0058g00660.t01	Wine grape	cytosol	45.17	51.02
KRH40835	Soybean	nucleus, peroxisome, plastid	49.21	50.46
KRH00350	Soybean	cytosol, peroxisome, plastid	47.64	50.0
AT5G01700.2	Thale cress	cytosol, peroxisome, plastid	42.02	48.95
KRH65575	Soybean	cytosol	11.46	46.36
KRH65533	Soybean	cytosol	21.57	45.5
Os11t0109000-01	Rice	cytosol, peroxisome, plastid	42.02	44.52
PGSC0003DMT400027278	Potato	cytosol	40.67	44.36
TraesCS5B01G149300.1	Wheat	cytosol	42.47	44.26
TraesCS5A01G150700.1	Wheat	cytosol	42.25	44.03
TraesCS5D01G155800.1	Wheat	cytosol	42.02	43.79
GSMUA_Achr7P22300_001	Banana	cytosol, peroxisome, plastid	41.35	43.71
HORVU5Hr1G047410.12	Barley	cytosol, peroxisome, plastid	42.02	43.59
KRH65545	Soybean	cytosol, peroxisome, plastid	21.57	43.24
CDY62635	Canola	cytosol, mitochondrion, peroxisome, plastid	37.3	43.12
Os12t0108600-00	Rice	cytosol, peroxisome, plastid	42.47	41.54
PGSC0003DMT400015950	Potato	plastid	33.26	41.34
PGSC0003DMT400060345	Potato	plastid	43.6	41.28
PGSC0003DMT400063747	Potato	cytosol, mitochondrion, peroxisome	33.71	40.87
EES07864	Sorghum	cytosol, nucleus, peroxisome	41.57	38.95
PGSC0003DMT400055813	Potato	plastid	40.45	38.3
Zm00001d005071_P001	Maize	cytosol	40.67	38.27
PGSC0003DMT400047180	Potato	plastid	39.78	37.5
KXG22794	Sorghum	cytosol, nucleus, peroxisome	41.8	36.98
PGSC0003DMT400056929	Potato	cytosol, nucleus, peroxisome	40.9	35.34
PGSC0003DMT400029340	Potato	cytosol, nucleus, peroxisome	41.35	33.33
PGSC0003DMT400081764	Potato	cytosol	21.35	22.95

Protein Annotations

KEGG:04658+3.1.3.16	KEGG:04660+3.1.3.16	MapMan:18.4.24.2.5	Gene3D:3.60.40.10	GO:GO:0003674	GO:GO:0003824
GO:GO:0004722	GO:GO:0006464	GO:GO:0006470	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987
GO:GO:0016787	GO:GO:0019538	InterPro:IPR001932	InterPro:IPR036457	UniProt:M1AV07	PFAM:PF00481
EnsemblPlantsGene:PGSC0003DMG400011863	PGSC:PGSC0003DMG400011863	EnsemblPlants:PGSC0003DMT400030965	InterPro:PP2C	InterPro:PPM-type_dom_sf	InterPro:PPM-type_phosphatase_dom
PFscan:PS51746	PANTHER:PTHR13832	PANTHER:PTHR13832:SF199	SMART:SM00332	SUPFAM:SSF81606	UniParc:UPI000296FB2F
SEG:seg	:	:	:	:	:

Description

Protein phosphatase-2c [Source:PGSC_GENE;Acc:PGSC0003DMG400011863]

Coordinates

chr10:+:49477046..49481107

Molecular Weight (calculated)

50190.0 Da

IEP (calculated)

6.853

GRAVY (calculated)

-0.629

Length

445 amino acids

Sequence
(BLAST)

001: MGACCTCQRG QKLEDKNHHH HNHHHNNHHS YFGENKNNNN GEHKEGEDDY QSIVGRGDLG ANVRLCGFSK FVSMYSQQGK KGINQDAMTV WENFGGQKGM
101: FFCGVFDGHG PSGHKVARYV RDSLPSKLSS SNVISANDIR WDAEKDDESN NPIFDAWKDK FIKSFKEMDE ELEGDGSIES YCSGTTAVTL VKQGEHLIVG
201: NLGDSRAIIC TRDDKNELVA KQLTVDLKPN LPAEYERIKS CEGRVMAMEE EPNIYRVWMP DQDCPGLAMA RAFGDFCLKD FGLISVPEVY YRKLTEKDEF
301: IVLASDGLWD VLSNDEVIRI VASARKRSIA ARLVVHHAVR AWKYKYPCAK VDDCAVVCLF LKRQKPLLTK SLSEVTELSL NYSEIATSKN YSPNSKIDDG
401: LDTLLNYQVK EEKDPNVATG LNDDHKKSSS RHARYLSRRK SAVNF

Best Arabidopsis Sequence Match ( AT5G01700.2 )
(BLAST)

001: MGVCCSKGTG IIVEHGADDG NECGDGEAEV RDTNDGAVVR TRGSSKHVSM SIKQGKKGIN QDAMTVWENF GGEEDTIFCG VFDGHGPMGH KISRHVCENL
101: PSRVHSKIRS SKSAGDENIE NNSSQSQEEL FREFEDILVT FFKQIDSELG LDSPYDSFCS GTTAVTVFKQ ADCLVIANLG HSRAVLGTRS KNSFKAVQLT
201: VDLKPCVQRE AERIVSCKGR VFAMEEEPDV YRVWMPDDDC PGLAMSRAFG DFCLKDYGLV CIPDVFCRKV SREDEFVVLA TDGIWDVLSN EEVVKVVGSC
301: KDRSVAAEML VQRAARTWRT KFPASKADDC AVVVLYLNHR PYPREGNVSR AISTISWRSN KSNNECYGAA PLSPLGLSQR VS

Arabidopsis Description

Probable protein phosphatase 2C 65 [Source:UniProtKB/Swiss-Prot;Acc:Q6NKS1]
SUBAcon: [peroxisome,plastid,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.