Factsheet for PGSC0003DMT400029340

Subcellular Localization

min:

: max

Winner_takes_all: peroxisome, nucleus, cytosol

Predictor Summary:

nucleus 3
peroxisome 1
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc10g005640.2.1	Tomato	nucleus	92.57	91.91
PGSC0003DMT400056929	Potato	cytosol, nucleus, peroxisome	69.93	74.95
GSMUA_Achr4P01590_001	Banana	cytosol, peroxisome, plastid	38.95	61.43
VIT_19s0015g01920.t01	Wine grape	mitochondrion, nucleus, peroxisome	54.71	59.1
CDX88554	Canola	nucleus	50.54	58.37
AT1G16220.1	Thale cress	nucleus	51.81	58.25
Bra035131.1-P	Field mustard	nucleus	51.27	58.11
GSMUA_Achr3P04090_001	Banana	plastid	47.46	57.46
CDY33350	Canola	cytosol, nucleus, plastid	49.82	57.29
CDY35072	Canola	cytosol, peroxisome, plastid	49.82	57.05
GSMUA_Achr6P17190_001	Banana	endoplasmic reticulum, vacuole	14.86	56.94
CDX87369	Canola	nucleus	50.72	56.91
Bra026075.1-P	Field mustard	cytosol, peroxisome, plastid	49.46	56.64
GSMUA_Achr5P22360_001	Banana	plastid	47.64	56.2
AT1G79630.1	Thale cress	nucleus	51.09	55.95
PGSC0003DMT400005637	Potato	cytosol	18.66	52.82
Os08t0500300-01	Rice	plasma membrane	50.0	51.98
Zm00001d052852_P001	Maize	plastid	49.09	51.82
PGSC0003DMT400027278	Potato	cytosol	38.22	51.72
HORVU7Hr1G049260.4	Barley	nucleus	48.55	51.44
TraesCS7A01G241800.1	Wheat	nucleus	48.37	50.95
Zm00001d031329_P002	Maize	nucleus	49.28	49.91
KXG25674	Sorghum	mitochondrion	49.09	47.38
PGSC0003DMT400055813	Potato	plastid	40.04	47.02
PGSC0003DMT400060345	Potato	plastid	40.04	47.02
TraesCS7B01G137400.2	Wheat	plastid	48.19	46.26
TraesCS7D01G240800.1	Wheat	mitochondrion	48.19	46.26
PGSC0003DMT400047180	Potato	plastid	39.31	45.97
PGSC0003DMT400063747	Potato	cytosol, mitochondrion, peroxisome	29.89	44.96
PGSC0003DMT400015950	Potato	plastid	26.99	41.62
PGSC0003DMT400030965	Potato	nucleus	33.33	41.35
Zm00001d008472_P001	Maize	cytosol	10.87	38.71
PGSC0003DMT400028836	Potato	nucleus	31.16	38.05
PGSC0003DMT400081764	Potato	cytosol	17.03	22.71

Protein Annotations

KEGG:04658+3.1.3.16	KEGG:04660+3.1.3.16	EntrezGene:102585731	MapMan:18.4.24.2.5	Gene3D:3.60.40.10	GO:GO:0003674
GO:GO:0003824	GO:GO:0004722	GO:GO:0006464	GO:GO:0006470	GO:GO:0008150	GO:GO:0008152
GO:GO:0009987	GO:GO:0016787	GO:GO:0019538	InterPro:IPR001932	InterPro:IPR036457	UniProt:M1ASM1
PFAM:PF00481	EnsemblPlantsGene:PGSC0003DMG400011273	PGSC:PGSC0003DMG400011273	EnsemblPlants:PGSC0003DMT400029340	InterPro:PP2C	InterPro:PPM-type_dom_sf
InterPro:PPM-type_phosphatase_dom	PFscan:PS51746	PANTHER:PTHR13832	PANTHER:PTHR13832:SF383	SMART:SM00332	SUPFAM:SSF81606
UniParc:UPI0002960334	RefSeq:XP_006352576.1	SEG:seg	:	:	:

Description

Phosphatase 2C family protein [Source:PGSC_GENE;Acc:PGSC0003DMG400011273]

Coordinates

chr10:+:699526..704234

Molecular Weight (calculated)

60499.1 Da

IEP (calculated)

5.445

GRAVY (calculated)

-0.483

Length

552 amino acids

Sequence
(BLAST)

001: MGICYSSSKG KKSEEKECDS KNESRKIDLK LRKNSSSNGD FSTFISKLSS GGGGGAGEGA EERGLQQIPG RLIGNGASNV GCLYTQQGKK GINQDAMIIW
101: ENYCSRSDTT LCGVFDGHGP HGHMVASKVR DYLPILLRSE WEGKSCGDQN AVSKNGNTNG GLHFDDIVDD DLVESVEAEN NEKFPEIHLQ IKRSLLRAFR
201: SMDKELKLHP SIDCFCSGST AVTLVMQGQD IFVGNVGDSR AVLATRDKDN SLMAVQLTVD LKPNLPREAA RIHKCKGRVF ALQDEPEVAR VWLPNCDSPG
301: LAMARAFGDF CLKDFGLISV PDVYYHHITE RDEFVLLATD GVWDVLSNKE AVDIVASAPS RATAGRALVD CATRAWRLKY PTSKNDDCAI VCLYLNSTPV
401: LDVKVIESQN KLTNSPEAEI KTNTKNGNKL TNSPEVETKL TNSPDVEIKT NTIDRNVGRS DTEAISTSQT AGCEDLSTPK DDSEIVPVVE SLEEHPDKGV
501: GQSKRSIAEF LSTAQDDEWS ALEGITRVNS LLSLPRFLSA EKRSNSWRRK WL

Best Arabidopsis Sequence Match ( AT1G16220.1 )
(BLAST)

001: MGLCHSKIDK TTRKETGATS TATTTVERQS SGRLRRPRDL YSGGEISEIQ QVVGRLVGNG SSEIACLYTQ QGKKGTNQDA MLVWENFCSR SDTVLCGVFD
101: GHGPFGHMVS KRVRDMLPFT LSTQLKTTSG TEQSSSKNGL NSAPTCVDEE QWCELQLCEK DEKLFPEMYL PLKRALLKTC QQMDKELKMH PTINCFCSGT
201: TSVTVIKQGK DLVVGNIGDS RAVLATRDQD NALVAVQLTI DLKPDLPSES ARIHRCKGRV FALQDEPEVA RVWLPNSDSP GLAMARAFGD FCLKDYGLIS
301: VPDINYHRLT ERDQYIILAT DGVWDVLSNK EAVDIVASAP SRDTAARAVV DTAVRAWRLK YPTSKNDDCA VVCLFLEDTS AGGTVEVSET VNHSHEESTE
401: SVTITSSKDA DKKEEASTET NETVPVWEIK EEKTPESCRI ESKKTTLAEC ISVKDDEEWS ALEGLTRVNS LLSIPRFFSG ELRSSSWRKW L

Arabidopsis Description

Probable protein phosphatase 2C 6 [Source:UniProtKB/Swiss-Prot;Acc:Q9SA22]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.