Factsheet for PGSC0003DMT400063747

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, peroxisome, cytosol

Predictor Summary:

nucleus 2
mitochondrion 3
peroxisome 1
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
PGSC0003DMT400006628
PGSC0003DMT400083870

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G05640.1	PGSC0003DMT400006628	AT4G08520.1	21798944
AT3G05640.1	PGSC0003DMT400083870	AT4G08520.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc01g100040.2.1	Tomato	cytosol, mitochondrion, peroxisome	98.09	98.09
VIT_14s0060g02070.t01	Wine grape	mitochondrion	77.38	77.6
KRH68473	Soybean	cytosol, mitochondrion, peroxisome	73.57	72.78
KRG96758	Soybean	cytosol, mitochondrion, peroxisome	73.02	72.63
KRH33864	Soybean	nucleus	71.93	71.74
Bra040530.1-P	Field mustard	cytosol, nucleus, peroxisome	67.85	71.55
CDY18810	Canola	cytosol, nucleus, peroxisome	67.85	71.55
AT3G05640.1	Thale cress	cytosol, mitochondrion, peroxisome	69.75	71.51
KRG92929	Soybean	nucleus	71.12	71.12
GSMUA_Achr11P...	Banana	mitochondrion	65.12	69.88
GSMUA_Achr8P10330_001	Banana	mitochondrion, nucleus	65.4	68.57
AT5G27930.1	Thale cress	nucleus	68.94	67.83
Bra036606.1-P	Field mustard	nucleus	67.57	66.49
CDY53338	Canola	cytosol, mitochondrion, nucleus	67.3	66.22
CDY19742	Canola	nucleus	67.03	65.95
CDY05554	Canola	nucleus	65.12	64.95
Bra020569.1-P	Field mustard	nucleus	65.94	64.53
CDY25013	Canola	nucleus	65.4	64.0
TraesCS1B01G242400.1	Wheat	cytosol, peroxisome, plastid	58.86	63.53
TraesCS1A01G228100.1	Wheat	mitochondrion	58.31	63.31
TraesCS1B01G242300.1	Wheat	mitochondrion	57.49	62.24
TraesCS1B01G242200.1	Wheat	mitochondrion	57.49	62.24
HORVU1Hr1G059090.7	Barley	cytosol, peroxisome, plastid	59.4	61.93
EES19385	Sorghum	mitochondrion, nucleus, peroxisome, plastid	59.13	61.47
Zm00001d037949_P001	Maize	mitochondrion	58.58	60.91
TraesCS1D01G229600.2	Wheat	mitochondrion	58.58	58.58
Os05t0358500-01	Rice	mitochondrion	56.13	58.36
TraesCS1D01G230000.2	Wheat	cytosol, peroxisome, plastid	58.31	58.15
TraesCS1D01G229700.1	Wheat	mitochondrion	58.31	58.15
PGSC0003DMT400015950	Potato	plastid	56.13	57.54
HORVU1Hr1G059130.3	Barley	mitochondrion	58.86	57.29
TraesCS1A01G228000.1	Wheat	mitochondrion, peroxisome, plastid	57.49	56.57
TraesCS1B01G033400.1	Wheat	cytosol, peroxisome	34.6	55.95
PGSC0003DMT400005637	Potato	cytosol	26.16	49.23
TraesCS1A01G228200.1	Wheat	mitochondrion	49.59	47.27
TraesCS7B01G361000.1	Wheat	mitochondrion, peroxisome, plastid	43.05	45.14
HORVU1Hr1G059140.2	Barley	mitochondrion, plastid	31.61	43.61
PGSC0003DMT400027278	Potato	cytosol	41.42	37.25
PGSC0003DMT400060345	Potato	plastid	46.59	36.38
PGSC0003DMT400030965	Potato	nucleus	40.87	33.71
PGSC0003DMT400056929	Potato	cytosol, nucleus, peroxisome	45.5	32.43
PGSC0003DMT400028836	Potato	nucleus	39.51	32.08
PGSC0003DMT400055813	Potato	plastid	40.6	31.7
PGSC0003DMT400047180	Potato	plastid	40.33	31.36
PGSC0003DMT400029340	Potato	cytosol, nucleus, peroxisome	44.96	29.89
PGSC0003DMT400081764	Potato	cytosol	26.43	23.43

Protein Annotations

KEGG:04658+3.1.3.16	KEGG:04660+3.1.3.16	EntrezGene:102589637	MapMan:18.4.24.2.5	Gene3D:3.60.40.10	GO:GO:0003674
GO:GO:0003824	GO:GO:0004722	GO:GO:0006464	GO:GO:0006470	GO:GO:0008150	GO:GO:0008152
GO:GO:0009987	GO:GO:0016787	GO:GO:0019538	InterPro:IPR001932	InterPro:IPR036457	UniProt:M1CB58
PFAM:PF00481	EnsemblPlantsGene:PGSC0003DMG400024772	PGSC:PGSC0003DMG400024772	EnsemblPlants:PGSC0003DMT400063747	InterPro:PP2C	InterPro:PPM-type_dom_sf
InterPro:PPM-type_phosphatase_dom	PFscan:PS51746	PANTHER:PTHR13832	PANTHER:PTHR13832:SF198	SMART:SM00332	SUPFAM:SSF81606
UniParc:UPI000296DBE3	RefSeq:XP_006344705.1	RefSeq:XP_006344706.1	RefSeq:XP_015163017.1	:	:

Description

Protein phosphatase 2c [Source:PGSC_GENE;Acc:PGSC0003DMG400024772]

Coordinates

chr1:-:77736435..77739934

Molecular Weight (calculated)

40953.5 Da

IEP (calculated)

6.638

GRAVY (calculated)

-0.282

Length

367 amino acids

Sequence
(BLAST)

001: MGHFSSMFNG LARSFSLKKR KNSSGNGKYD GRDAVEAMAK EAKRNDLILR SSGTVNVDGS KNFASLFSRR GEKGVNQDCF IVWEEFGCQH DMAFCGIFDG
101: HGPWGHFVSK QVRESIVSSL LCIWQESLAE ASADPDLDKK DQRFNIWKES FLKACATVDQ ELEHHPKIDT FYSGTTALTI VRQGEVLFVA NVGDSRAVLA
201: TTCDDGNLVP VQLTVDFKPN LPQETERILQ CNGRVFCLDD ESGVHRLWLP DESSPGLAMS RAFGDYCVKD FGLISVPDVT QRHITSKDQF VVLATDGVWD
301: VISNEEAVEI VSETPDRAKA AKHLVQCAVR AWKRKRRGIA VDDISAIVLF FHSKHFCQHI YPVTTPK

Best Arabidopsis Sequence Match ( AT5G27930.1 )
(BLAST)

001: MGHFSSMFNG LARSFSIKKV KNNNGNCDAK EAADEMASEA KKKELILKSS GYVNVQGSNN LASLFSKRGE KGVNQDCALV WEGFGCQEDM IFCGIFDGHG
101: PWGHYVAKQV RNSMPLSLLC NWQKILAQAT LEPELDLEGS NKKISRFDIW KQSYLKTCAT VDQELEHHRK IDSYYSGTTA LTIVRQGEVI YVANVGDSRA
201: VLAMESDEGS LVAVQLTLDF KPNLPQEKER IIGCKGRVFC LDDEPGVHRV WQPDAETPGL AMSRAFGDYC IKEYGLVSVP EVTQRHISTK DHFIILASDG
301: IWDVISNQEA IEIVSSTAER PKAAKRLVEQ AVRAWKKKRR GYSMDDMSVV CLFLHSSSSS SLSQHHHAMT ILK

Arabidopsis Description

PPC6-7Probable protein phosphatase 2C 73 [Source:UniProtKB/Swiss-Prot;Acc:Q0WRB2]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.