Factsheet for PGSC0003DMT400028836

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
peroxisome 1
mitochondrion 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc10g085370.1.1	Tomato	cytosol, nucleus, peroxisome	95.13	94.92
PGSC0003DMT400030965	Potato	nucleus	68.14	69.21
CDY40298	Canola	cytosol, peroxisome, plastid	42.04	52.63
Bra009643.1-P	Field mustard	cytosol, peroxisome, plastid	41.81	52.35
PGSC0003DMT400005637	Potato	cytosol	22.35	51.79
KRH76051	Soybean	cytoskeleton, cytosol, peroxisome	32.52	50.69
KRH65540	Soybean	cytosol	22.79	50.24
VIT_08s0058g00660.t01	Wine grape	cytosol	42.26	48.48
AT5G01700.2	Thale cress	cytosol, peroxisome, plastid	40.71	48.17
KRH40835	Soybean	nucleus, peroxisome, plastid	45.8	47.7
KRH00350	Soybean	cytosol, peroxisome, plastid	44.47	47.41
CDY62635	Canola	cytosol, mitochondrion, peroxisome, plastid	37.61	44.16
KRH65533	Soybean	cytosol	20.58	44.08
KRH65575	Soybean	cytosol	10.62	43.64
Os11t0109000-01	Rice	cytosol, peroxisome, plastid	40.04	43.1
GSMUA_Achr7P22300_001	Banana	cytosol, peroxisome, plastid	40.04	42.99
TraesCS5A01G150700.1	Wheat	cytosol	40.27	42.62
TraesCS5D01G155800.1	Wheat	cytosol	40.04	42.39
HORVU5Hr1G047410.12	Barley	cytosol, peroxisome, plastid	40.04	42.19
TraesCS5B01G149300.1	Wheat	cytosol	39.82	42.15
KRH65545	Soybean	cytosol, peroxisome, plastid	20.58	41.89
PGSC0003DMT400015950	Potato	plastid	31.86	40.22
PGSC0003DMT400027278	Potato	cytosol	36.28	40.2
Os12t0108600-00	Rice	cytosol, peroxisome, plastid	40.27	40.0
PGSC0003DMT400063747	Potato	cytosol, mitochondrion, peroxisome	32.08	39.51
PGSC0003DMT400060345	Potato	plastid	40.27	38.72
PGSC0003DMT400047180	Potato	plastid	39.82	38.14
PGSC0003DMT400055813	Potato	plastid	39.6	38.09
EES07864	Sorghum	cytosol, nucleus, peroxisome	39.6	37.68
Zm00001d005071_P001	Maize	cytosol	38.5	36.79
KXG22794	Sorghum	cytosol, nucleus, peroxisome	39.38	35.39
PGSC0003DMT400056929	Potato	cytosol, nucleus, peroxisome	37.83	33.2
PGSC0003DMT400029340	Potato	cytosol, nucleus, peroxisome	38.05	31.16
PGSC0003DMT400081764	Potato	cytosol	20.35	22.22

Protein Annotations

KEGG:04658+3.1.3.16	KEGG:04660+3.1.3.16	MapMan:18.4.24.2.5	Gene3D:3.60.40.10	GO:GO:0003674	GO:GO:0003824
GO:GO:0004722	GO:GO:0006464	GO:GO:0006470	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987
GO:GO:0016787	GO:GO:0019538	InterPro:IPR001932	InterPro:IPR036457	UniProt:M1ART1	PFAM:PF00481
EnsemblPlantsGene:PGSC0003DMG400011104	PGSC:PGSC0003DMG400011104	EnsemblPlants:PGSC0003DMT400028836	InterPro:PP2C	InterPro:PPM-type_dom_sf	InterPro:PPM-type_phosphatase_dom
PFscan:PS51746	PANTHER:PTHR13832	PANTHER:PTHR13832:SF199	SMART:SM00332	SUPFAM:SSF81606	UniParc:UPI000295AE1A
SEG:seg	:	:	:	:	:

Description

Protein phosphatase-2c [Source:PGSC_GENE;Acc:PGSC0003DMG400011104]

Coordinates

chr10:+:53701932..53705996

Molecular Weight (calculated)

51599.5 Da

IEP (calculated)

5.905

GRAVY (calculated)

-0.681

Length

452 amino acids

Sequence
(BLAST)

001: MGACCSCQRV RHFDHQGNYR HHNYINGDDK EDNIIVEDDH HGVVGKGDFG ANIRLHGYSK FVSMYSQQGK KGINQDAMTV WENFGGEKGA FFCGVFDGHG
101: PSGHKVARYV RDLLPSKISI SLKESDINEN EIIRNIENDE ESNQNFPLFD AWKSAYLKSF KEMDEQLGRE PSIESYSSGT TAVTLFKQGE HLFIGNLGDS
201: RAIICTRDEK NQLVSQQLTV DLKPHLLNEY ERIKSCKGRV MAMEQEPNVY RVWMPDEDCP GLAMARAFGD FCLKDYGLIS TPEVYYRKLT ENDEFVVLAT
301: DGVWDVLTND EVIRIVSTTR KRSMAAKTLV ECAVRAWKYK YPRAKIDDCG VVCLFFKRQK PLLTKSMSEV TQLSFNYAEL ANDQNYPDNT KTDDGLDTLL
401: NYQVKEGDDQ EIDRGVKDGS VNDNKNSSTD HLHYRGQRRK SAMKFVYPED HQ

Best Arabidopsis Sequence Match ( AT5G01700.2 )
(BLAST)

001: MGVCCSKGTG IIVEHGADDG NECGDGEAEV RDTNDGAVVR TRGSSKHVSM SIKQGKKGIN QDAMTVWENF GGEEDTIFCG VFDGHGPMGH KISRHVCENL
101: PSRVHSKIRS SKSAGDENIE NNSSQSQEEL FREFEDILVT FFKQIDSELG LDSPYDSFCS GTTAVTVFKQ ADCLVIANLG HSRAVLGTRS KNSFKAVQLT
201: VDLKPCVQRE AERIVSCKGR VFAMEEEPDV YRVWMPDDDC PGLAMSRAFG DFCLKDYGLV CIPDVFCRKV SREDEFVVLA TDGIWDVLSN EEVVKVVGSC
301: KDRSVAAEML VQRAARTWRT KFPASKADDC AVVVLYLNHR PYPREGNVSR AISTISWRSN KSNNECYGAA PLSPLGLSQR VS

Arabidopsis Description

Probable protein phosphatase 2C 65 [Source:UniProtKB/Swiss-Prot;Acc:Q6NKS1]
SUBAcon: [peroxisome,plastid,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.