Subcellular Localization
min:
: max
Winner_takes_all: mitochondrion, peroxisome, plastid
Predictor Summary:
Predictor Summary:
- peroxisome 1
- mitochondrion 2
- plastid 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| TraesCS5A01G168700.2 | |
| TraesCS5B01G165500.2 | |
| TraesCS5D01G173000.1 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT3G05640.1 | TraesCS5A01G168700.2 | AT4G08520.1 | 21798944 |
| AT3G05640.1 | TraesCS5B01G165500.2 | AT4G08520.1 | 21798944 |
| AT3G05640.1 | TraesCS5D01G173000.1 | AT4G08520.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS1B01G242200.1 | Wheat | mitochondrion | 85.25 | 93.81 |
| TraesCS1A01G228100.1 | Wheat | mitochondrion | 84.18 | 92.9 |
| TraesCS1D01G229600.2 | Wheat | mitochondrion | 84.72 | 86.1 |
| HORVU1Hr1G059130.3 | Barley | mitochondrion | 84.45 | 83.55 |
| EES19385 | Sorghum | mitochondrion, nucleus, peroxisome, plastid | 73.46 | 77.62 |
| Os05t0358500-01 | Rice | mitochondrion | 71.58 | 75.64 |
| Zm00001d037949_P001 | Maize | mitochondrion | 71.31 | 75.35 |
| GSMUA_Achr11P... | Banana | mitochondrion | 61.93 | 67.54 |
| TraesCS1A01G228200.1 | Wheat | mitochondrion | 66.49 | 64.42 |
| GSMUA_Achr8P10330_001 | Banana | mitochondrion, nucleus | 59.79 | 63.71 |
| HORVU1Hr1G059140.2 | Barley | mitochondrion, plastid | 43.7 | 61.28 |
| AT3G05640.1 | Thale cress | cytosol, mitochondrion, peroxisome | 56.3 | 58.66 |
| CDY18810 | Canola | cytosol, nucleus, peroxisome | 54.69 | 58.62 |
| Bra040530.1-P | Field mustard | cytosol, nucleus, peroxisome | 54.69 | 58.62 |
| Solyc01g100040.2.1 | Tomato | cytosol, mitochondrion, peroxisome | 56.84 | 57.77 |
| VIT_14s0060g02070.t01 | Wine grape | mitochondrion | 56.57 | 57.65 |
| PGSC0003DMT400063747 | Potato | cytosol, mitochondrion, peroxisome | 56.57 | 57.49 |
| KRH68473 | Soybean | cytosol, mitochondrion, peroxisome | 57.1 | 57.41 |
| KRG96758 | Soybean | cytosol, mitochondrion, peroxisome | 56.57 | 57.18 |
| KRG92929 | Soybean | nucleus | 55.5 | 56.4 |
| KRH33864 | Soybean | nucleus | 55.23 | 55.98 |
| Bra036606.1-P | Field mustard | nucleus | 55.5 | 55.5 |
| CDY05554 | Canola | nucleus | 54.69 | 55.43 |
| CDY19742 | Canola | nucleus | 54.96 | 54.96 |
| CDY53338 | Canola | cytosol, mitochondrion, nucleus | 54.69 | 54.69 |
| AT5G27930.1 | Thale cress | nucleus | 54.69 | 54.69 |
| Bra020569.1-P | Field mustard | nucleus | 54.69 | 54.4 |
| CDY25013 | Canola | nucleus | 54.42 | 54.13 |
| PGSC0003DMT400015950 | Potato | plastid | 50.4 | 52.51 |
| Solyc01g065700.2.1 | Tomato | nucleus | 50.67 | 52.35 |
| KRH50799 | Soybean | cytosol | 50.4 | 51.23 |
| AT3G16800.2 | Thale cress | nucleus | 47.99 | 51.0 |
| VIT_05s0077g01820.t01 | Wine grape | cytosol, mitochondrion, peroxisome, plastid | 54.69 | 50.75 |
| KRH02293 | Soybean | cytosol | 50.94 | 50.53 |
| CDY67911 | Canola | nucleus | 47.19 | 50.14 |
| CDY50503 | Canola | nucleus | 47.19 | 50.14 |
| Bra021202.1-P | Field mustard | nucleus | 47.19 | 50.14 |
| Bra022179.1-P | Field mustard | nucleus | 45.84 | 48.72 |
| CDX95903 | Canola | nucleus | 45.58 | 48.43 |
| CDX92097 | Canola | nucleus | 45.58 | 48.43 |
| TraesCS6A01G187700.1 | Wheat | cytosol, nucleus, peroxisome | 38.61 | 39.89 |
| TraesCS2A01G201900.1 | Wheat | cytosol, peroxisome, plastid | 39.41 | 34.35 |
| TraesCS5A01G150700.1 | Wheat | cytosol | 37.8 | 33.02 |
| TraesCS7A01G241800.1 | Wheat | nucleus | 42.63 | 30.34 |
| TraesCS6A01G193100.1 | Wheat | mitochondrion | 39.41 | 28.38 |
| TraesCS2A01G274100.1 | Wheat | mitochondrion | 39.68 | 28.03 |
| TraesCS2A01G141100.2 | Wheat | cytosol | 26.01 | 20.68 |
| TraesCS6A01G191000.1 | Wheat | plastid | 24.93 | 8.56 |
Protein Annotations
| KEGG:04658+3.1.3.16 | KEGG:04660+3.1.3.16 | MapMan:18.4.24.2.5 | Gene3D:3.60.40.10 | GO:GO:0003674 | GO:GO:0003824 |
| GO:GO:0004722 | GO:GO:0006464 | GO:GO:0006470 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009987 |
| GO:GO:0016787 | GO:GO:0019538 | InterPro:IPR001932 | InterPro:IPR036457 | PFAM:PF00481 | InterPro:PP2C |
| InterPro:PPM-type_dom_sf | InterPro:PPM-type_phosphatase_dom | PFscan:PS51746 | PANTHER:PTHR13832 | PANTHER:PTHR13832:SF198 | SMART:SM00332 |
| SUPFAM:SSF81606 | EnsemblPlantsGene:TraesCS1A01G228000 | EnsemblPlants:TraesCS1A01G228000.1 | TIGR:cd00143 | : | : |
Description
No Description!
Coordinates
chr1A:-:399229913..399232361
Molecular Weight (calculated)
40930.6 Da
IEP (calculated)
8.263
GRAVY (calculated)
-0.318
Length
373 amino acids
Sequence
(BLAST)
(BLAST)
001: MSLPVHTTGV VGRAETKRGG GEETLSGCFF GVARMRQLSS LLQGLARSMA LGKERKEEEQ GTVLRTSGTL RGEGSGTLAA VWSRRGEKGT NQDCSVVWEG
101: FGCQEDTIFC GIFDGHGQWG HYVSKAVRDS LPPSLVRRWQ EAVTLASLIN GEKKLCHSQF DLWKQSYLAA AAAVDEELRR SRRLDAVNSG STALSIIKKG
201: DTMVIANVGD SRAVLGTTSD DGSIAAVQLT VDFKPNLPQE KARIVQCKGR VYCDEDEPGV HRVWLPDREA PGLAMSRAFG DYCVKDYGVI SAPEVTQRRI
301: TARDQFVILA TDGVWDVVSN EEAVQIVAAT PEREKAAKRL VQWAVRAWRR KRRGYAVDDC SAICLFFHHS PPS
101: FGCQEDTIFC GIFDGHGQWG HYVSKAVRDS LPPSLVRRWQ EAVTLASLIN GEKKLCHSQF DLWKQSYLAA AAAVDEELRR SRRLDAVNSG STALSIIKKG
201: DTMVIANVGD SRAVLGTTSD DGSIAAVQLT VDFKPNLPQE KARIVQCKGR VYCDEDEPGV HRVWLPDREA PGLAMSRAFG DYCVKDYGVI SAPEVTQRRI
301: TARDQFVILA TDGVWDVVSN EEAVQIVAAT PEREKAAKRL VQWAVRAWRR KRRGYAVDDC SAICLFFHHS PPS
001: MGHFSSMFNG IARSFSIKKA KNINSSKSYA KEATDEMARE AKKKELILRS SGCINADGSN NLASVFSRRG EKGVNQDCAI VWEGYGCQED MIFCGIFDGH
101: GPWGHFVSKQ VRNSMPISLL CNWKETLSQT TIAEPDKELQ RFAIWKYSFL KTCEAVDLEL EHHRKIDSFN SGTTALTIVR QGDVIYIANV GDSRAVLATV
201: SDEGSLVAVQ LTVDFKPNLP QEEERIIGCN GRVFCLQDEP GVHRVWQPVD ESPGLAMSRA FGDYCIKDYG LVSVPEVTQR HISIRDQFII LATDGVWDVI
301: SNQEAIDIVS STAERAKAAK RLVQQAVRAW NRKRRGIAMD DISAVCLFFH SSSSSPSL
101: GPWGHFVSKQ VRNSMPISLL CNWKETLSQT TIAEPDKELQ RFAIWKYSFL KTCEAVDLEL EHHRKIDSFN SGTTALTIVR QGDVIYIANV GDSRAVLATV
201: SDEGSLVAVQ LTVDFKPNLP QEEERIIGCN GRVFCLQDEP GVHRVWQPVD ESPGLAMSRA FGDYCIKDYG LVSVPEVTQR HISIRDQFII LATDGVWDVI
301: SNQEAIDIVS STAERAKAAK RLVQQAVRAW NRKRRGIAMD DISAVCLFFH SSSSSPSL
Arabidopsis Description
Probable protein phosphatase 2C 34 [Source:UniProtKB/Swiss-Prot;Acc:Q9M9W9]
SUBAcon: [mitochondrion,peroxisome,cytosol]
SUBAcon: [mitochondrion,peroxisome,cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.