CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
plastid 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH56012	Soybean	nucleus	96.82	96.82
KRH22416	Soybean	nucleus, plastid	86.41	85.68
KRH26917	Soybean	cytosol, plastid	86.2	85.65
VIT_12s0059g01820.t01	Wine grape	plastid	84.08	83.72
PGSC0003DMT400047180	Potato	plastid	78.77	78.6
Solyc07g054300.2.1	Tomato	plastid	78.34	78.18
CDY48559	Canola	plastid	72.82	77.95
CDY21964	Canola	plastid	72.61	77.9
PGSC0003DMT400055813	Potato	plastid	75.8	75.96
Bra034206.1-P	Field mustard	plastid	74.52	75.48
Solyc10g008490.2.1	Tomato	plastid	74.52	74.84
AT4G03415.2	Thale cress	plastid	74.1	74.57
CDY69821	Canola	plastid	62.0	74.3
CDX89881	Canola	plastid	66.45	73.65
Bra033411.1-P	Field mustard	mitochondrion	65.18	72.58
CDY15466	Canola	cytosol, peroxisome, plastid	64.76	71.93
AT1G03590.1	Thale cress	cytosol, nucleus, peroxisome, plastid	70.49	71.86
CDY51389	Canola	cytosol, peroxisome, plastid	64.33	71.63
Bra030536.1-P	Field mustard	cytosol, peroxisome, plastid	67.3	70.92
EER99559	Sorghum	plastid	56.9	62.18
Zm00001d021817_P001	Maize	plastid	56.69	61.95
Zm00001d006614_P001	Maize	plastid	56.69	61.81
Os07t0566200-01	Rice	plasma membrane	55.84	61.59
TraesCS2D01G214200.1	Wheat	cytosol, peroxisome, plastid	55.84	61.02
TraesCS2A01G201900.1	Wheat	cytosol, peroxisome, plastid	55.41	60.98
HORVU2Hr1G039710.1	Barley	cytosol, peroxisome, plastid	55.63	60.79
TraesCS2B01G229000.1	Wheat	cytosol, peroxisome, plastid	55.63	60.79
GSMUA_Achr9P24510_001	Banana	plastid	53.29	59.76
HORVU2Hr1G084080.1	Barley	cytosol, plastid	18.9	57.05
KRH45221	Soybean	cytosol, mitochondrion, peroxisome	19.75	54.39
KRH36356	Soybean	cytosol	22.51	50.96
KRG93121	Soybean	plastid	38.22	49.32
KRH40292	Soybean	plastid	49.89	48.06
KRH00931	Soybean	plastid	49.68	48.05
KRH45219	Soybean	vacuole	9.55	47.37
KRH76051	Soybean	cytoskeleton, cytosol, peroxisome	29.09	47.24
KRH65540	Soybean	cytosol	20.17	46.34
KRH01535	Soybean	cytosol	42.89	44.4
KRH52174	Soybean	cytoskeleton, cytosol, peroxisome	31.85	43.73
KRH05503	Soybean	cytoskeleton, cytosol, peroxisome	31.21	42.73
KRH65533	Soybean	cytosol	19.11	42.65
KRH40835	Soybean	nucleus, peroxisome, plastid	39.28	42.63
KRH65575	Soybean	cytosol	9.77	41.82
KRH00350	Soybean	cytosol, peroxisome, plastid	37.58	41.75
KRH33864	Soybean	nucleus	31.85	40.76
KRG92929	Soybean	nucleus	31.42	40.33
KRH65545	Soybean	cytosol, peroxisome, plastid	18.68	39.64
KRH68473	Soybean	cytosol, mitochondrion, peroxisome	31.0	39.35
KRG96758	Soybean	cytosol, mitochondrion, peroxisome	30.57	39.02
KRH50799	Soybean	cytosol	29.72	38.15
KRH02293	Soybean	cytosol	29.94	37.5
KRH15511	Soybean	cytosol, nucleus, peroxisome	18.26	36.13
KRH45222	Soybean	nucleus	15.5	31.47
KRH02158	Soybean	cytosol	21.87	24.76
KRH20951	Soybean	plastid	22.08	24.13
KRH11326	Soybean	cytosol, mitochondrion, nucleus, plastid	22.08	24.13
KRH50972	Soybean	cytosol	21.02	23.4
KRH39350	Soybean	cytosol	26.33	11.53
KRH76332	Soybean	cytosol	25.27	10.86

Protein Annotations

KEGG:04658+3.1.3.16	KEGG:04660+3.1.3.16	EntrezGene:100798340	MapMan:18.4.24.2.5	Gene3D:3.60.40.10	EMBL:ACUP02007273
EnsemblPlantsGene:GLYMA_12G109500	GO:GO:0003674	GO:GO:0003824	GO:GO:0004722	GO:GO:0006464	GO:GO:0006470
GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016787	GO:GO:0019538	UniProt:I1LRZ4
InterPro:IPR001932	InterPro:IPR036457	ProteinID:KRH25522.1	ProteinID:KRH25523.1	EnsemblPlants:KRH25524	ProteinID:KRH25524
ProteinID:KRH25524.1	PFAM:PF00481	InterPro:PP2C	InterPro:PPM-type_dom_sf	InterPro:PPM-type_phosphatase_dom	PFscan:PS51746
PANTHER:PTHR13832	PANTHER:PTHR13832:SF193	SMART:SM00332	SUPFAM:SSF81606	UniParc:UPI000233C71E	SEG:seg

Description

hypothetical protein

Coordinates

chr12:-:10308026..10314332

Molecular Weight (calculated)

51714.4 Da

IEP (calculated)

5.157

GRAVY (calculated)

-0.494

Length

471 amino acids

Sequence
(BLAST)

001: MGCCVSTSSR STCSSKSNGD MVSPSCLETG CCGQKRTRRT FSDHVISLHH LPSLPNRIFT NGKSRSSCIF TQQGRKGINQ DAMIVWEDFM SEDTIFCGVF
101: DGHGPHGHLV ARKVRDALPT KLVSSLHSNE SKRNGSGKTC FKGNVKPDSG DSEKDCSAED KLNSTWREAF MKAYKAMDKE LRSHPNLDCF CSGSTAVTIV
201: KQGSNLFMGY IGDSRAIMGS KDSNDSIVAI QLTVDLKPDL PREAERIKKC KGRVFALQDE PEVPRVWLPF DDAPGLAMAR AFGDFCLKEY GVISIPEFSH
301: RQLTDRDQFI ILASDGVWDV LSNEEVVEIV SSAPTRSSAA RILVDSAARE WKLKYPTSKM DDCAVVCLFL DGKMDSESDY EEQGFSSATI QSNHSGNPIE
401: SDDGQKSEPS LQRNFTVRSS EENETNGALS VDVVEDATSS ADDQNWSGLE GVTRVNSLVQ LPRFSEEGPN S

Best Arabidopsis Sequence Match ( AT1G16220.1 )
(BLAST)

001: MGLCHSKIDK TTRKETGATS TATTTVERQS SGRLRRPRDL YSGGEISEIQ QVVGRLVGNG SSEIACLYTQ QGKKGTNQDA MLVWENFCSR SDTVLCGVFD
101: GHGPFGHMVS KRVRDMLPFT LSTQLKTTSG TEQSSSKNGL NSAPTCVDEE QWCELQLCEK DEKLFPEMYL PLKRALLKTC QQMDKELKMH PTINCFCSGT
201: TSVTVIKQGK DLVVGNIGDS RAVLATRDQD NALVAVQLTI DLKPDLPSES ARIHRCKGRV FALQDEPEVA RVWLPNSDSP GLAMARAFGD FCLKDYGLIS
301: VPDINYHRLT ERDQYIILAT DGVWDVLSNK EAVDIVASAP SRDTAARAVV DTAVRAWRLK YPTSKNDDCA VVCLFLEDTS AGGTVEVSET VNHSHEESTE
401: SVTITSSKDA DKKEEASTET NETVPVWEIK EEKTPESCRI ESKKTTLAEC ISVKDDEEWS ALEGLTRVNS LLSIPRFFSG ELRSSSWRKW L

Arabidopsis Description

Probable protein phosphatase 2C 6 [Source:UniProtKB/Swiss-Prot;Acc:Q9SA22]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.