Factsheet for Solyc10g008490.2.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

nucleus 4
plastid 5

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400055813	Potato	plastid	96.38	96.17
Solyc07g054300.2.1	Tomato	plastid	83.16	82.63
VIT_12s0059g01820.t01	Wine grape	plastid	77.61	76.96
KRH25524	Soybean	nucleus	74.84	74.52
KRH56012	Soybean	nucleus	74.63	74.31
CDY48559	Canola	plastid	68.23	72.73
CDY21964	Canola	plastid	68.02	72.67
KRH22416	Soybean	nucleus, plastid	73.56	72.63
KRH26917	Soybean	cytosol, plastid	72.92	72.15
CDX89881	Canola	plastid	64.39	71.06
AT1G03590.1	Thale cress	cytosol, nucleus, peroxisome, plastid	68.87	69.91
Bra034206.1-P	Field mustard	plastid	69.3	69.89
Bra033411.1-P	Field mustard	mitochondrion	62.9	69.74
AT4G03415.2	Thale cress	plastid	69.51	69.66
CDY15466	Canola	cytosol, peroxisome, plastid	62.9	69.58
CDY69821	Canola	plastid	58.21	69.47
CDY51389	Canola	cytosol, peroxisome, plastid	61.62	68.32
Bra030536.1-P	Field mustard	cytosol, peroxisome, plastid	64.39	67.56
Os07t0566200-01	Rice	plasma membrane	55.44	60.89
Zm00001d006614_P001	Maize	plastid	55.65	60.42
EER99559	Sorghum	plastid	55.44	60.32
Zm00001d021817_P001	Maize	plastid	55.22	60.09
GSMUA_Achr9P24510_001	Banana	plastid	53.52	59.76
HORVU2Hr1G039710.1	Barley	cytosol, peroxisome, plastid	53.73	58.47
TraesCS2D01G214200.1	Wheat	cytosol, peroxisome, plastid	53.73	58.47
TraesCS2A01G201900.1	Wheat	cytosol, peroxisome, plastid	53.3	58.41
TraesCS2B01G229000.1	Wheat	cytosol, peroxisome, plastid	53.52	58.24
HORVU2Hr1G084080.1	Barley	cytosol, plastid	17.7	53.21
Solyc04g056560.2.1	Tomato	cytosol	42.86	50.12
Solyc05g055790.2.1	Tomato	plastid	46.7	46.6
Solyc08g065670.2.1	Tomato	peroxisome	28.78	44.12
Solyc07g066260.2.1	Tomato	cytosol, nucleus, peroxisome	46.48	42.33
Solyc10g076320.1.1	Tomato	nucleus	39.02	41.97
Solyc08g065500.1.1	Tomato	cytosol, endoplasmic reticulum, extracellular, golgi, nucleus, peroxisome, plasma membrane, vacuole	29.64	41.37
Solyc01g100040.2.1	Tomato	cytosol, mitochondrion, peroxisome	31.34	40.05
Solyc10g085370.1.1	Tomato	cytosol, nucleus, peroxisome	38.38	39.74
Solyc08g065540.2.1	Tomato	cytosol, nucleus, peroxisome	27.93	39.46
Solyc10g005640.2.1	Tomato	nucleus	46.7	39.39
Solyc01g065700.2.1	Tomato	nucleus	30.28	39.34
Solyc08g065680.1.1	Tomato	cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, peroxisome, plasma membrane, plastid, vacuole	15.56	35.61
Solyc01g080400.2.1	Tomato	cytosol	20.9	23.67
Solyc05g018300.2.1	Tomato	cytosol	24.52	10.65

Protein Annotations

KEGG:04658+3.1.3.16	KEGG:04660+3.1.3.16	MapMan:18.4.24.2.5	Gene3D:3.60.40.10	GO:GO:0003674	GO:GO:0003824
GO:GO:0004722	GO:GO:0006464	GO:GO:0006470	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987
GO:GO:0016787	GO:GO:0019538	InterPro:IPR001932	InterPro:IPR036457	UniProt:K4CY26	PFAM:PF00481
InterPro:PP2C	InterPro:PPM-type_dom_sf	InterPro:PPM-type_phosphatase_dom	PFscan:PS51746	PANTHER:PTHR13832	PANTHER:PTHR13832:SF193
SMART:SM00332	SUPFAM:SSF81606	EnsemblPlantsGene:Solyc10g008490.2	EnsemblPlants:Solyc10g008490.2.1	UniParc:UPI000276B995	SEG:seg

Description

No Description!

Coordinates

chr10:+:2617871..2620080

Molecular Weight (calculated)

51817.8 Da

IEP (calculated)

4.788

GRAVY (calculated)

-0.455

Length

469 amino acids

Sequence
(BLAST)

001: MGGCVSTSSS TCSSRSNGEK VSPECLGINM FSRKKSRRTF SDHVIALKHL SSIPNRIFTN GKSRTSCIYT QQGRKGINQD AMIVWEDFMA EDVTFCGVFD
101: GHGPHGHLVA RKVRDVLPLK LMSFLQSVES KGNGSAADCS NENPESEVLD PDKDQVNLDT QRREAFLQSY KAMDKELRSQ PNLDCFCSGS TAITLVKQGS
201: NLYMGYIGDS RAILASKDDN DSMVAVQLTV DLKPDLPKEA ERIKQCKGRV FALQDEPEVQ RVWLPFDNAP GLAMARAFGD FCVKDYGVIS VPEFSHRVLT
301: ERDKFIVLAS DGVWDVLSNE EVVDIVSSAS TRSSAARILV DSAAREWKIK YPTSKMDDCA VVCLFLDGKM DLESDNEEEQ CLTSAALQSN HSGIAAESDD
401: GHNSEPSLQR NTTVRSAEES DIYKRVIAEA EADQETTMTE DQKWSGLEGV TRVNSLVQLP RFSDERQGP

Best Arabidopsis Sequence Match ( AT1G03590.1 )
(BLAST)

001: MGGCISKTSW SNEEPMHRPC LGMGCCGSKM GKRGFSDRMV SLHNLVSIPN RIIGNGKSRS SCIFTQQGRK GINQDAMIVW EDFMSKDVTF CGVFDGHGPH
101: GHLVARKVRD SLPVKLLSLL NSIKSKQNGP IGTRASKSDS LEAEKEESTE EDKLNFLWEE AFLKSFNAMD KELRSHPNLE CFCSGCTAVT IIKQGSNLYM
201: GNIGDSRAIL GSKDSNDSMI AVQLTVDLKP DLPREAERIK QCKGRVFALQ DEPEVSRVWL PFDNAPGLAM ARAFGDFCLK DYGVISIPEF SHRVLTDRDQ
301: FIVLASDGVW DVLSNEEVVE VVASATSRAS AARLVVDSAV REWKLKYPTS KMDDCAVVCL FLDGRMDSET SDNEEQCFSS ATNAVESDES QGAEPCLQRN
401: VTVRSLSTDQ ENNSYGKVIA EADNAEKEKT REGEQNWSGL EGVTRVNSLV QLPRFPGEEP KT

Arabidopsis Description

PPC6-6Probable protein phosphatase 2C 1 [Source:UniProtKB/Swiss-Prot;Acc:Q9LR65]
SUBAcon: [peroxisome,plastid,nucleus,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.