Factsheet for VIT_04s0023g00690.t01

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 9
nucleus 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc04g056560.2.1	Tomato	cytosol	62.14	75.31
PGSC0003DMT400027278	Potato	cytosol	63.17	75.25
KRH40292	Soybean	plastid	73.25	72.8
KRH00931	Soybean	plastid	72.43	72.28
PGSC0003DMT400060345	Potato	plastid	68.72	71.06
Solyc05g055790.2.1	Tomato	plastid	67.9	70.21
CDY53743	Canola	plastid	67.49	70.09
Bra021414.1-P	Field mustard	plastid	67.28	70.02
CDY53741	Canola	plastid	66.87	69.59
Bra040598.1-P	Field mustard	plastid	65.43	69.43
CDX92009	Canola	plastid	63.99	65.75
CDX74239	Canola	plastid	64.2	64.2
AT3G02750.3	Thale cress	plastid	69.34	63.95
Bra001060.1-P	Field mustard	plastid	62.55	63.73
CDY28706	Canola	cytosol, peroxisome, plastid	64.81	59.43
CDY51537	Canola	cytosol, peroxisome, plastid	64.4	58.72
VIT_19s0015g01920.t01	Wine grape	mitochondrion, nucleus, peroxisome	57.0	54.21
VIT_04s0008g00740.t01	Wine grape	cytosol	36.01	50.14
VIT_12s0059g01820.t01	Wine grape	plastid	47.74	49.05
VIT_08s0058g00660.t01	Wine grape	cytosol	39.71	48.98
VIT_14s0060g02070.t01	Wine grape	mitochondrion	36.83	48.91
VIT_05s0077g01820.t01	Wine grape	cytosol, mitochondrion, peroxisome, plastid	35.6	43.03
VIT_05s0020g02360.t01	Wine grape	cytosol	19.96	24.94
VIT_11s0016g03430.t01	Wine grape	cytosol	25.1	11.27

Protein Annotations

KEGG:04658+3.1.3.16	KEGG:04660+3.1.3.16	EntrezGene:100246183	wikigene:100246183	MapMan:18.4.24.2.5	Gene3D:3.60.40.10
ProteinID:CCB44504	ProteinID:CCB44504.1	UniProt:F6GX18	EMBL:FN594959	GO:GO:0003674	GO:GO:0003824
GO:GO:0004722	GO:GO:0006464	GO:GO:0006470	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987
GO:GO:0016787	GO:GO:0019538	InterPro:IPR001932	InterPro:IPR036457	EntrezGene:LOC100246183	wikigene:LOC100246183
PFAM:PF00481	InterPro:PP2C	InterPro:PPM-type_dom_sf	InterPro:PPM-type_phosphatase_dom	PFscan:PS51746	PANTHER:PTHR13832
PANTHER:PTHR13832:SF539	SMART:SM00332	SUPFAM:SSF81606	TIGR:TC58968	UniParc:UPI00015CA46D	ArrayExpress:VIT_04s0023g00690
EnsemblPlantsGene:VIT_04s0023g00690	EnsemblPlants:VIT_04s0023g00690.t01	unigene:Vvi.14034	RefSeq:XP_002277393	RefSeq:XP_002277393.1	RefSeq:XP_019075054.1
SEG:seg	:	:	:	:	:

Description

No Description!

Coordinates

chr4:+:17021519..17026731

Molecular Weight (calculated)

53654.3 Da

IEP (calculated)

6.004

GRAVY (calculated)

-0.456

Length

486 amino acids

Sequence
(BLAST)

001: MGSCLSAESS RPLPSSPSGS LGVRRRKNSK RRLGSRTSSF DSRREEQLHK IPGRMFLNGA SDFASLFTQQ GKKGTNQDAM IVWENFGSRT DTVFCGVFDG
101: HGPYGHMVAK RVRDSLPLKL SAHWEVNINE DVLKEISLNT TGSMNSEDTA FISADEESRP SIDLEETEKQ PEIFQALKES FLKAFKVMDR ELRMHTNIDC
201: FCSGTTAVTL VKQGQDLVIG NVGDSRAVLG TRDKDGYLVA IQLTVDLKPN LPGEAERIRR FKGRVFALQD EPEVARVWLP NNDSPGLAMA RAFGDFCLKD
301: FGLISVPEIS YRRLSEKDEF VVLATDGVWD VLSNKEVVDI VASASSRSTA ARTLVETAVR AWRLKYPTSK VDDCAVVCLF LNSNTNNFST ASTKSKEQVT
401: PLEQTDAGIE KDLLGPTGLD RSGTVRTGKE IHPEDSQEEA SKQEEFHTES GIEWSALEGV SRVNTLLTLP RFVPGKDDKK VSGKTS

Best Arabidopsis Sequence Match ( AT3G02750.1 )
(BLAST)

001: MGSCLSAESR SPRPGSPCSP AFSVRKRKNS KKRPGSRNSS FDYRREEPLN QVPGRMFLNG STEVACIYTQ QGKKGPNQDA MVVWENFGSR TDTIFCGVFD
101: GHGPYGHMVA KRVRDNLPLK LSAYWEAKVP VEGVLKAITT DTVNNVTNIN NPEDAAAAAA FVTAEEEPRT SADMEEENTE TQPELFQTLK ESFLKAFKVM
201: DRELKFHGSV DCFCSGTTAV TLIKQGQYLV VGNVGDSRAV MGTRDSENTL VAVQLTVDLK PNLPAEAERI RKCRGRVFAL RDEPEVCRVW LPNCDSPGLA
301: MARAFGDFCL KDFGLISVPD VSFRQLTEKD EFIVLATDGI WDVLSNEDVV AIVASAPSRS SAARALVESA VRAWRYKYPT SKVDDCAAVC LYLDSSNTNA
401: ISTASSISKL EDGEEEELKA TTEDDDASGP SGLGRSSTVR SGKEIALDES ETEKLIKEAD NLDSEPGTEY SALEGVARVN TLLNLPRFVP GK

Arabidopsis Description

Protein phosphatase 2C family protein [Source:TAIR;Acc:AT3G02750]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.