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Canola
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Canola
Subcellular Localization
min:
: max

 
Winner_takes_all: nucleus

Predictor Summary:
  • nucleus 3
  • peroxisome 1
  • mitochondrion 1
Predictors GFP MS/MS Papers
Winner Takes All:nucleus
Any Predictor:nucleus, peroxisome
BaCelLo:nucleus
MultiLoc:peroxisome
PProwler:mitochondrion
WoLF PSORT:nucleus
YLoc:nucleus
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
CDX74112 Canola plastid 20.22 25.71
CDY08060 Canola plastid 19.56 24.86
CDY18847 Canola cytosol 16.89 23.31
CDY72270 Canola cytosol 10.89 23.22
CDX88210 Canola cytosol 16.0 21.3
CDX80553 Canola cytosol 16.0 21.3
CDY45023 Canola cytosol 14.89 20.55
CDX72381 Canola cytosol 14.44 19.94
CDY28276 Canola cytosol 14.44 19.94
CDY46975 Canola cytosol, mitochondrion, peroxisome 13.78 19.94
CDY13509 Canola cytosol 14.22 19.63
CDX91383 Canola cytosol 13.78 19.38
CDY37649 Canola mitochondrion, plastid 18.22 19.07
CDY70364 Canola cytosol, peroxisome 15.11 18.78
CDY69821 Canola plastid 16.22 18.58
CDY50503 Canola nucleus 14.44 18.52
CDY67911 Canola nucleus 14.44 18.52
CDY63003 Canola mitochondrion, plastid 18.0 18.49
CDX92097 Canola nucleus 14.22 18.23
CDY40298 Canola cytosol, peroxisome, plastid 14.44 18.01
CDY51389 Canola cytosol, peroxisome, plastid 16.89 17.97
CDY18810 Canola cytosol, nucleus, peroxisome 13.78 17.82
CDY15466 Canola cytosol, peroxisome, plastid 16.44 17.45
CDX89881 Canola plastid 16.44 17.41
CDY00978 Canola cytosol 13.56 17.38
CDX95903 Canola nucleus 13.56 17.38
CDY56581 Canola cytosol 13.11 17.35
CDY53741 Canola plastid 17.78 17.13
CDY53743 Canola plastid 17.78 17.09
CDX92009 Canola plastid 17.56 16.7
CDY05554 Canola nucleus 13.33 16.3
CDY19742 Canola nucleus 13.33 16.09
CDY53338 Canola cytosol, mitochondrion, nucleus 13.33 16.09
CDX74239 Canola plastid 17.11 15.84
CDY33350 Canola cytosol, nucleus, plastid 16.89 15.83
CDY62635 Canola cytosol, mitochondrion, peroxisome, plastid 13.33 15.58
CDY25013 Canola nucleus 12.89 15.47
CDX97493 Canola cytosol 11.33 15.36
CDY35072 Canola cytosol, peroxisome, plastid 16.44 15.35
CDX88554 Canola nucleus 16.22 15.27
CDY21964 Canola plastid 14.89 15.26
CDY48559 Canola plastid 14.67 15.0
CDX87369 Canola nucleus 16.22 14.84
CDY51537 Canola cytosol, peroxisome, plastid 17.11 14.45
CDY28706 Canola cytosol, peroxisome, plastid 16.89 14.34
CDY34568 Canola cytosol 4.44 14.29
CDY05716 Canola cytosol 26.44 11.05
CDY35922 Canola cytosol 26.44 11.01
Protein Annotations
EnsemblPlants:CDX82702EnsemblPlantsGene:GSBRNA2T00137967001Gene3D:2.130.10.10Gene3D:3.60.40.10GO:A0A078D0P5GO:GO:0003674
GO:GO:0005488GO:GO:0005515InterPro:IPR015943InterPro:IPR036457InterPro:PPM-type_dom_sfInterPro:WD40/YVTN_repeat-like_dom_sf
KEGG:04658+3.1.3.16KEGG:04660+3.1.3.16PANTHER:PTHR22850PANTHER:PTHR22850:SF184ProteinID:CDX82702ProteinID:CDX82702.1
SEG:segUniParc:UPI0004EE263FMapMan:35.1:::
Description
BnaC07g01640D
Coordinates
chrLK031829:+:1386259..1389242
Molecular Weight (calculated)
51110.6 Da
IEP (calculated)
7.721
GRAVY (calculated)
-0.486
Length
450 amino acids
Sequence
(BLAST)
001: MAEHNLQNEI VGEGDEVFAI FQRPTEHWIV YNDVAALFNQ HFNGTPFNWT CVPFCGSYRS LPGCSTCGSR PPKMKRRRRK KSVRILWWRK IWKWLKEGKL
101: KVQSQKVKSE SEADDRDKHP DYNPYQHGLV ALANFLSTPH AASVQEHVLI RKVIELHDKY IVYEIGAQCS QFVKRRLCEN LLRHGRFRED AAKACNTAFL
201: STNSQLHVDV VDDKGGRSTW RMLVTRTGVL AEKRDGDLVA VDFSIDQTPF RADELERGTE EDDDGDPLTP RLWVPNVMYP GTAFTRSIGD SIAETIGALK
301: EAFEIFCNKT VAGSSSAELL AALCANILKK RGSEKWGPQL DQATYKNRQH LYLSEQTDGN VPNTLVIANC EVVKPRVAAA EHISQVNRIR ELSQNSKIIS
401: THTNSPDNAP DPWTIVSVSD DCENWWRWNI AGLIETGMMA TIKRDFVTYM
Best Arabidopsis Sequence Match ( AT2G20050.1 )
(BLAST)
0001: MGCAYSKTCI GQICATKENS IRQTHQQAPS RGGTRATAAA AAVEEDNPVF NFSSDAVDDV DNDEIHQLGL SRDQEWGITR LSRVSSQFLP PDGSRVVKVP
0101: SCNYELRCSF LSQRGYYPDA LDKANQDSFA IHTPFGSNSD DHFFGVFDGH GEFGAQCSQF VKRRLCENLL RHGRFRVDPA EACNSAFLTT NSQLHADLVD
0201: DSMSGTTAIT VMVRGRTIYV ANAGDSRAVL AEKRDGDLVA VDLSIDQTPF RPDELERVKL CGARVLTLDQ IEGLKNPDVQ CWGTEEDDDG DPPRLWVPNG
0301: MYPGTAFTRS IGDSIAETIG VVANPEIAVV ELTPDNPFFV VASDGVFEFI SSQTVVDMVA KHKDPRDACA AIVAESYRLW LQYETRTDDI TIIVVHIDGL
0401: KDDAPRQLSS TGTQLQPPIP QVVELTGSES PSTFGWNSKN QRVRHDLSRA RIRAIENSLE NGHAWVPPSP AHRKTWEEEA HIERVLRDHF LFRKLTDSQC
0501: QVLLDCMQRL EANPGDIVVK QGGEGDCFYV VGSGEFEVLA TQDGKNGEVP RILQRYTAEK QSSFGELALM HNKPLQASVR AVDHGTLWAL KREDFRGILM
0601: SEFSNLASLK LLRSVDLLSR LTILQLSHVA ESLSEACFSD GQTIVTKDQK LQGLYVIQKG RVKISFCTEV LESQNVSSLT TGITNEYDNL EIGTEVSIEK
0701: HEGSYFGEWA LLGELKDSLS VVAVGEVVCV VLTKENFESA VGPLTNISDD GPKTRHSSFE LSKESAKVTD TTALAKATLA DLEWTTCLST TDCSEIGLVH
0801: LKDKENLLSL KRFSKQKVKK LGKEAQVLKE RNLMKNVIKP SAIVPEILCT CVDQTFAAIL LNTTLACPIS SLLHSPLDES SVRFITGSLV SAIEDIHKNE
0901: ILFRGSSPEL LMLDQSGYLQ IVDFRFAKKL SGERTFTICG NADYLAPEIV QGKGHGYAAD WWALGVLIYY MLEGEMPFGS WRESELDTFQ KIAKGQLTFP
1001: RVLSSEAEDL ITKLLEVDEN LRFGSQGGPE SIKKHPWFNG LKWEAISNRE FQVPQEIISR IHHHLENDNV LPLETSKSLD TTEDQDAQNW LEEW
Arabidopsis Description
Protein phosphatase 2C and cyclic nucleotide-binding/kinase domain-containing protein [Source:UniProtKB/Swiss-Prot;Acc:Q9SL76]
SUBAcon: [cytosol]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.